| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 508,652 | C→T | intergenic (+93/+223) | ybaQ → / ← copA | DNA‑binding transcriptional regulator YbaQ/Cu(+) exporting P‑type ATPase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 508,652 | 0 | C | T | 95.0% | 51.5 / ‑3.8 | 20 | intergenic (+93/+223) | ybaQ/copA | DNA‑binding transcriptional regulator YbaQ/Cu(+) exporting P‑type ATPase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (10/9); minor base . (0/1); total (10/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.79e-01 | |||||||||||
CAGTCGATTTTTGGCTAAACCTCCAGGCGGCGGTTGATCTTTGGGAAGTTGAAAACAACATGCGCACCCAGGAAGAATTGGGACGGATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCC‑GTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGC > NC_000913/508414‑508856 | caGTCGATTTTTGGCTAAACCGCCAGGCGGCGGTTGATCTTTGGGAAGTTGAAAACAACATGCGCACCCAGGAAGAATTGGGACGGATTGAAACAGTGGCGTAATATGTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCC‑GTTTTATCAGGCCTa < 1:168418/251‑1 (MQ=255) gCTAAACCTCCAGGCGGCGGGTGATCTTTGGGAAGTTGCAAACAACCTGCGCACCCAGGAAGACTTGGGACGGATTGAAACAGGGGCTGAATATTTGGCCCGCCGTTAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGCTAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCC‑GTTTTCTCAAGCCTCCCAACTTGTGCCt > 1:73137/1‑251 (MQ=38) tGATCTTTGGGAAGTTGAAAACAACAGGCGCACCCAGGAAGAATTGGGACGGATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCC‑GTTTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAgg < 1:311667/250‑1 (MQ=255) cTTTGGGAAGTTGAAAACAACATGCGCACCCAGGAAGAATTGGGACGGATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGGGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCC‑GTTTTATCAGGCCTACAAACTtgtn < 1:49247/223‑2 (MQ=255) ggccGGATTGAAACATTGGCTGAATATTTGGCACGCCGTAAAGAGCGTGCAAAAAAGTTCGCGTAAGGCCAAAACATCGCTGCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCC‑GTTTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGc < 1:98029/248‑1 (MQ=255) ggATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCC‑GTTTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGAAAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTAc > 1:402720/1‑251 (MQ=255) aCAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCTTCCGGCATCTGAGCACCAGTGCCGGATGCTACGCGTACCC‑GTTTTAGCAGGCCTACAAACTTGTGCCTGAACCGTAGTCTGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCCCCATTGCCTGATGCTACGCTTACGCGTCTTa < 1:448542/251‑1 (MQ=37) cAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATACGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCC‑GTTTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAgg > 1:227674/1‑191 (MQ=255) cACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCC‑GTTTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGa > 1:144532/1‑217 (MQ=255) naaaaaaGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCC‑GTTTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGcc > 1:89221/2‑147 (MQ=255) aaaGGTCGNGNNNGNNCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCNCATCCGGCATCCGAGNACNATTGNCTGNTGCGACGCTTACCC‑GTTTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatccgg > 2:316466/1‑169 (MQ=255) aaaGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCTGCATCCGAGCACCATTGCCTGATGCGACGCTTACCC‑GTTTTAGCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgcatccgg < 1:316466/169‑1 (MQ=255) gcgTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCC‑GTTTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGNCCGNNNNNggnn > 2:272910/1‑144 (MQ=255) gcgTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCAAGCACCATTGCCTAATGCGACGCTTACCC‑GTTTTATCAGGCCTACAAACTTGTGACTGAACCGTCGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGc > 1:245240/1‑171 (MQ=18) cgTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATACGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCC‑GTTTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATCCGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTa > 1:72371/1‑211 (MQ=255) gATAAGGCGGTCACGCCGCGTCCGTCATCCGAGCACCATTGCCTGATGCGACTCTTACCCAGT‑TTATCAGGCCTACAAAGTTGTGCCTGAACCGTAGGCCGGATAAGGCTTTTACGTCGCATCCGGCATCCGAGCACCACGGCCTGATGCGGCGCTTACTCGTCTTATCAGGCCTGCAAGCCTCAGCCTGAACCGTTGGCCAGATAAGGTGGTGACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATgc < 1:384942/251‑1 (MQ=21) aaGGCGTTCACTCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTGACCC‑GTTTTATCAGGCCTACAAACTTGTGCCTGATCCGTATGCCGGATAAGGCTTTGACGCCGCATCCGGCAGCCGATCACCATTGCCTGATGCGACTCTTACGCGTCTTATCAGGCCTACAAACCGGTGCCTGAACCTTAGGCGGGATAAGGCGTTGACGCCGCATCCGGCAGTCATGCTTCGATGCCAAATgcgc < 1:65033/250‑1 (MQ=25) gccgcATCAGGCATCCGAGCACCATTGACTGATGCGAGGCTTACCC‑GTTTTAACAGGCCTACAAACTTGTACCTGACCCGGAGGCCGGNNAAGGCGnnt > 2:34214/1‑99 (MQ=14) ccgcATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCC‑GTTTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGAt < 1:152210/227‑1 (MQ=255) cgcATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCC‑GTTTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAagcagc < 1:34214/251‑1 (MQ=255) | CAGTCGATTTTTGGCTAAACCTCCAGGCGGCGGTTGATCTTTGGGAAGTTGAAAACAACATGCGCACCCAGGAAGAATTGGGACGGATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCC‑GTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGC > NC_000913/508414‑508856 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |