| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 496,241 | C→T | F374F (TTC→TTT) | htpG → | chaperone protein HtpG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 496,241 | 0 | C | T | 92.9% | 26.9 / ‑3.5 | 14 | F374F (TTC→TTT) | htpG | chaperone protein HtpG |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (4/9); total (5/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.57e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.11e-01 | |||||||||||
CCTGAAACTGTATGTTCAGCGTGTGTTCATCATGGACGACGCAGAACAGTTCATGCCGAACTATCTGCGCTTCGTGCGTGGTCTGATTGACTCCAGCGATCTGCCGCTGAACGTTTCCCGTGAAATCCTCCAGGACAGCACGGTAACGCGTAACCTGCGCAATGCGCTGACCAAGCGTGTGCTGCAAATGCTGGAAAAACTGGCGAAAGACGACGCGGAAAAATACCAGACCTTCTGGCAACAGTTTGGCCTGGTACTGAAAGAAGGTCCGGCGGAAGATTTCGCTAACCAGGAAGCGATCGCCAAACTGCTGCGTTTTGCTTCTACCCATACCGATTCTTCTGCGCAGACCGTATCTCTGGAAGACTACGTTTCCCGCATGAAAGAAGGGCAGGAGAAAATCTACTACATC > NC_000913/496007‑496418 | ccTGAAACTGTATGTTCAGCGTGTGTTCATCATGGACGCCGCAGAACAGTTCATGCCGAACTATCTGCGCTTCGTGCGTGGTCTGATTGACTCCAGCGATCTGCCGCTGAACGTTTCCCGTGAAATCCTCCAGGACAGCACGGTAACGCGTAACCTGCGCAATGCGCTGACCAAGCGTGTGCTGCAAATGCTGGAAAAACTGGCGAAAGACGACGCGGAAAAATACCAGACCTTTTGGcttattgacgatg > 1:326464/1‑239 (MQ=255) catGGACGACGCAGAACAGTTCATGCCGAACTATCTGCGCTTCGTGCGTGGTCTGATTGACTCCAGCGATCTGCCGCTGAACGTTTCCCGTGAAATCCTCCAGGACAGCACGGTAACGCGTAACCTGCGCAATGCGCTGACCAAGCGTGTGCTGCAAATGCTGGAAAAACTGGCGGAAGACGACGCGGAAAAATACCAGACCTTTTggn < 1:133287/209‑2 (MQ=255) gacgacGCAGAACAGTTCATGCCGAACTATCTGCGCTTCGTGCGTGGTCTGATTGACTCCAGCGATCTGCCGCTGAACGTTTCCCGTGAAATCCTCCAGGACGGCACGGTAACGCGTAACCGGCGCAATGCGCTGACCAAGCGTGTGCTGCAAATGCTGGAAAAACTGGCGAAAGACGACGCGGAAAAATACCAGACCTTTTGGCAACAGTTTGGCCTGGTACTGAAAGAAGGTCCGGCGGAAGATTTCGc < 1:451738/251‑1 (MQ=255) acgCAGAACAGTTAATGCCGAACTATCTGCGCTTCGTGCGTGGTCTGATTGACTCCAGCGATCTGCCGCTGAACGTTTCCCGTGAAATCCTCCAGGACAGCACGGTAACGCGTAACCTGCGCAATGCGCTGACCAAGCGTGTGCTGCAAATGCTGGAAAAACTGGCGAAAGACGACGCGGAAAAATACCAGACCTTTTGGCAACAGTTTGGCCTGGTACTGAAAGAAGGTCCGGCGGAAGATTTCGCTAAc > 1:368811/1‑251 (MQ=255) cgCAGAACAGTTCATGCCGAACTATCTGCGCTTCGTGCGTGGTCTGATTGACTCCAGCGATCTGCCGCTGAACGTTTCCCGTGAAATCCTCCAGGACAGCACGGTAACGCGTAACCTGCGCAATGCGCTGACCAAGCGTGTGTTGCAAATGCTGGAAAAACTGGCGAAAGACGACGCGGAAAAATACCAGACCTTTTGGCAACAGTTTGGCCTGGTACTGAAAGAAGGTCCGGCGGAAGATTTCGCTAAcc < 1:164046/251‑1 (MQ=255) cgtgcgtgGTCTGATTGACTCCAGCGATCTGCCGCTGAACGTTTCCCGTGAAATCCTCCAGGACAGCACGGTAACGCGTAACCTGCGCAATGCGCTGACCAAGCGTGTGCTGCAAATGCTGGAAAAACTGGCGAAAGACGACGCGGAAAAATACCAGACCTTTTGTCAACAGTTTGGCCTGGTACTGAAAGAAGGTCCGGCGGAAGATTTCGCTAACCAGGAAGCGATCGCCAAACTGCTGCGTTTTGCtt < 1:1872/251‑1 (MQ=255) gATTGACTCCAGCGATCTGCCGCTGAACGTTTCCCGTGAAATCCTCCAGGACAGCACGGTAACGCGTAACCTGCGCAATGCGCTGACCAAGCGTGTGCTGCAAATGCTGGAAAAACTGGCGAAAGACGACGCGGAAAAATACCAGACCTTTTGGCAACAGTTTGGCCTGGTACTGAAAGAAGGTCCGGCGGAAGATTTCGCTAACCAGGAAGCGATCGCCAAAc < 1:9397/224‑1 (MQ=255) gACAGCACNGNNNCNNGTAACCTGCGCAATGCGCTGACCAAGCGTGTGCTGCAAATGCTGNAAAAACTGGCGCAAGNCGNCGCGNAAANATACCCGACCTTTTGGCAACAGTTTGGCCTGGGACTGAAAGAAGGTCCGGCGGAAGATTTCGCTAATCAGGAAGCGATCGc > 2:320254/1‑170 (MQ=255) gACAGCACGGTAACGCGTAACCTGCGCAAGGCGCTGACCAAGCGTGTGCTGCAAATGCGGGAAAAACTGGCGAAAGACGACGCGGAAAAATTCCAGACCGTTGGGGAACAGTTTGGCCTGGTACTGAAACAAGGTCCGGCGGAAGATTTCGCTAACCAGGAAGCGCTCGc < 1:320254/170‑1 (MQ=255) gcgcTGACCAAGCGTGTGCTGCAAATNCTGGAANNACNGGCGAAAGACGACGCGGAANAANNNCNNNCNTTTTGNCANNAGTTTGGCCNGGTACTGAAAGAAGGTCCGGCGGAAGATTTCGCTAACCAGGAAGCGATCGCCANACTTCTGCGNNTTGCTTCTACCCATACCGATTNTTTNNCNNANAccng > 2:98993/1‑189 (MQ=255) gCTGGAAAAACTGGCGAAAGACGACGCGGAAAAATACCAGACCTTTTGGCAACAGTTTGGCCTGGTa < 1:252359/67‑1 (MQ=255) nacgCGGAAAAATACCAGACCTTCTGGCAACAGTTTGGCCTGGTACTGAAAGAAGGTCCGGCGGAAGATTTCGCTAACCAGGAAGCGATCGCCAAACTGCTGCGTTTTGCTTCTACCCATACCGATTCTTCTGCGCAGAc > 1:48011/2‑140 (MQ=255) gacgCGGAAAAATACCAGACCTTTTGGCAACAGTTTGGCCTGGTACTGAAAGGAGGTCCGGCGGAAGATTTCGCTAACCAGGAAGCGATCGCCAAACTGCTGCGTTTTGCTTCTACCCATACCGATTCTTCTGCGCAGACCGTATCTCTGGAAGACTACGTTTCCCGCATGAAAGAAGGGCAGGAGAAAATCTACTACATc < 1:443893/201‑1 (MQ=255) cgGAAAAATACCAGACCTTTTGGCAACAGTTTGGCCTGGTACTGAAAGAAGGTCCGTCTGAAGATTTCGCTAACCAGGAAGCGATc < 1:127062/86‑1 (MQ=255) | CCTGAAACTGTATGTTCAGCGTGTGTTCATCATGGACGACGCAGAACAGTTCATGCCGAACTATCTGCGCTTCGTGCGTGGTCTGATTGACTCCAGCGATCTGCCGCTGAACGTTTCCCGTGAAATCCTCCAGGACAGCACGGTAACGCGTAACCTGCGCAATGCGCTGACCAAGCGTGTGCTGCAAATGCTGGAAAAACTGGCGAAAGACGACGCGGAAAAATACCAGACCTTCTGGCAACAGTTTGGCCTGGTACTGAAAGAAGGTCCGGCGGAAGATTTCGCTAACCAGGAAGCGATCGCCAAACTGCTGCGTTTTGCTTCTACCCATACCGATTCTTCTGCGCAGACCGTATCTCTGGAAGACTACGTTTCCCGCATGAAAGAAGGGCAGGAGAAAATCTACTACATC > NC_000913/496007‑496418 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |