| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 474,379 | C→T | V261V (GTG→GTA) | tesB ← | acyl‑CoA thioesterase II |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 474,379 | 0 | C | T | 95.0% | 44.8 / ‑3.9 | 20 | V261V (GTG→GTA) | tesB | acyl‑CoA thioesterase II |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (8/11); total (9/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.50e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.69e-01 | |||||||||||
CATTTATCGGCTACAAATTGGCGGATCTGACGGTTGGTCTGCGTGTACCGGAAGAGCAGGAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGCACAAAGCCACGTGCGCTGGACGCCGAGGTGCTCTCCACGCTATACAGCAGCCATTCATTCAAATTAAACGGGCGATGGAACCACATGGAATGGTCAATGGTGGCAATCTGAATCCCCGGTTCGAGAAAACCGATGCCGTGCGGCTGTAGAGCTACCGGCAGGAAGTTAAGATCAGAAGCGTAACCGAGCAGATACTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTGCGC > NC_000913/474140‑474614 | catgtATCGGCTACAAATTGGCGAATCTGACGGTTTGTCTGCGTGGTCCGGAAGAGCAGGAGCGAGAATGGCTGTATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTATCAAACACGGCAAAAAACAGCCGGACGGTTTTCACCTCCTTCTAATTTTTTAATTGTGATTACTCATCACCCCTACCTTTTCGGGAGAGGCAACCAGTACTCCTTCTTGGGTATAAAACTCACCGCGTACAAAGACACg < 1:307977/247‑1 (MQ=255) gCGGATCTGACGGTTGGTCTGCGTGTACCGGAAGAGCAGGAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCGCCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGTACAAAGcc < 1:368983/228‑1 (MQ=255) gCGGATCTGACGGTTGGTCTGCGTGTACCGGAAGAGCAGGAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCGCCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGTACAAAGCCACGTGCGCTGGACGCCGAGGTGc < 1:65099/251‑1 (MQ=255) gCAGGAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATACCGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGTACAAAGCCACGTGCGCTGGACGCCGAGGTGCTCTCCACGCTATACCGCAGCCATTCATTCAAAtt > 1:322615/1‑250 (MQ=255) gCAGGAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCCCTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGTACAAAGCCACGTGCGCTGGACGCCGAGGTGCTCTCCACGCTATACAGCAGCCATTCATTCAAAtt > 1:63096/1‑250 (MQ=255) gCAGGAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTACGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGCACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGTACAAAGCCACGTGCGCTGGACGCCGCGGTGCTCTCCACGCTATACAGCAGCCATTCATTCAAAtt > 1:63083/1‑250 (MQ=255) cgataaGGGCTGAATGTAAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTGCACCTCCGGCTATTTTTTAAATTGTGATGACGCATCACCCCTCCCTGAACGGTCCAGGCAACCAGTACGCCGGCTTGGGTATAAAACTCACCACTTACAAAGCCACGGGCGCGGGACCCGGAGGTGCTGTCAACGCTATACGCCAGCCATTCATTCAAATTAAACGGGc < 1:219891/247‑1 (MQ=255) ccTATAACGCGTAACAAGCACGGCAAAAAACAGCCGGACGGTTTTCTCCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCGTCCGGAAGGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGTACAAAGCCACGTg < 1:289056/154‑1 (MQ=255) aaCGCGTAACAAGCACTGCAAAAAACAGCCGGACTGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACTCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGTACAAAGCCACGTGCGCTGGACGCCGAGGTGCTCTCCACGCTATACAGCAGCCATTCATTCAAATTAAACGGGCGATGGAACCACATGGAATGGTCAATGGTGGCAATCTGAATc < 1:186246/250‑1 (MQ=255) aaCAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGGCGAGGCAACCAGTACGCCGTCTTTGGTATAAAACTCACCGCGTACAAAGCCACGTGCGCTGGACGCCGAGGTGCTCTCCACGCTATACAGCAGTCATTCATTCAAAGTAAACGGGCGATGGAACCACATGGAATGGTCAATGGTGGCAATCTGAATCCCCGGtt < 1:209136/250‑1 (MQ=255) gCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGTACAAAGCCACGTGCGCTGGACGCCGAGGTGCTCTCCACGCTATACAGCAGCCATTCATTCAAATTAAACGGGCGATGGAACCACATGGAATGGTCAATGGTGGCAATCTGAATCCCCGGTTCgaga > 1:432660/1‑250 (MQ=255) aTTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGTACAAAGCCACGTGCGCTGGACGCCGAGGTTCTCTCCACGCTATACAGCAGCCAGTCATTCAAATTAAACGGGCGAGGGAACCACATGGAATTGTCAATGGTGGCAATCTGAAGTCCCGGTTCGATAAAACCGATGCCGTGCGGCTGTAGAGCTACCGGCAGGAAGTTAAGATCAg < 1:333967/251‑1 (MQ=255) ccTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGTCCAACGCCACGTGCGCTGGACGCCGAGGTGCTCTCCACGCTCTACAGCAGCCATTCATTCAAATTAAACGGGCGATGGAACCACATGGAATGGTCAATGGTGGCAATCTGAATCCCCGGTTCGAGAAAACCGATGCCGTGCGGCTGTAGAGCTACCGGCAGGAAGTTAAGATCAGAAGCGCAACCGAGCAGAt > 1:221820/1‑250 (MQ=255) gTCGAGGCNANNNGNNCGCCGTCTTGGGTATAAAACTCACCGCGTACAAAGCCACGTGCGNTGGACGCCGAGGTGCNCTNCACGNTATNCAGCAGCCATTCATTCAAATTAAACGGGCGATGGAACCACATGGAATGGTCAATGGTGGCAATCTGAATCCCCGGTTCGAGAAAACCGATGCCGTg > 2:318254/1‑185 (MQ=255) gTCGAGGCAACCAGTACGCCGTCTTGNGGATAANNCTNTCCGCGTACAAAGCCACGTNCCNNNGNNNCNGCGGTNCTNNCCACGCTATNCAGCAGCCATTCATTCAAATTCAACGGGCGATGGAACCACATGGTATGGTCTANGGAGGCAATNNGAATCCCCGGTTCGCGAAAACNGATNNANNGNgganggn > 2:93851/1‑188 (MQ=255) gTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCTCCGCGTACAAAGCCTCGTGCGCTGGACGCCGAGGTGCTCTCCACGCTATACAGCATCCATTCATTCAAATTAAACGGGCGATTGAACCACATGTAATGGTCAATGGTGGCAATCTGAATCCCCGGTTCGAGAAAACCGATGCCGTg < 1:318254/185‑1 (MQ=255) tcAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGCACAAAGCCACGTGCGCTGGACGCCGAGGTGCTCTCCACGCTATACAGCAGCCATTCATTCAAATTAAACGGGCGATGGAACCACATGGAATGGTCAATGGAGGCAATCTGAATCCCCGGTTCGAGaaatcctct > 1:96320/2‑167 (MQ=255) ataAAACTCACCGCGTACAAAGCCACGTGCGCTGGACGCCGAGGTGCTCTCCACGCGATACAGCAGCCATGCATTCAAATTAAACGGGCGATGGAACCACATGGAATGTTCAATTGTGGCAATCTGAATCCCCGGTTCGAGAAAACCGATGCCGTGCGGCTGTAGATCTACCGGCAGGAAGTTAAGATCATAAGCGTAACCGAGCAGATACTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTgcgc < 1:316911/251‑1 (MQ=255) cTCACCGCGTACAAAGCCACGTGCGCTGGACGCCGAGGTGCTCTCCACGCTATACAGCAGCCATTCATTCAAATTAAACGGGCGATGGNNCCACATNNa > 2:25798/1‑99 (MQ=255) cTCACCGCGTACAAAGCCACGTGCGCTGGACGCCGAGGTGCTCTCCACGCTATACAGCAGCCATTCATTCAAATTAAACGGGCGATGGAACCACATGGAATGGTCAATGGTGGCAATCTGAATCCCCGGTTCGAGAAAACCGATGCCGTGCGGCTGTAGAGCTACCGGCAGGAAg < 1:25798/175‑1 (MQ=255) | CATTTATCGGCTACAAATTGGCGGATCTGACGGTTGGTCTGCGTGTACCGGAAGAGCAGGAGCGAGAAGGGCTGGATGTCAACAGCCACGGCGAGAATGCCTATAACGCGTAACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTTTAATTGTGATTACGCATCACCCCTTCCTGAACGGTCGAGGCAACCAGTACGCCGTCTTGGGTATAAAACTCACCGCGCACAAAGCCACGTGCGCTGGACGCCGAGGTGCTCTCCACGCTATACAGCAGCCATTCATTCAAATTAAACGGGCGATGGAACCACATGGAATGGTCAATGGTGGCAATCTGAATCCCCGGTTCGAGAAAACCGATGCCGTGCGGCTGTAGAGCTACCGGCAGGAAGTTAAGATCAGAAGCGTAACCGAGCAGATACTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTGCGC > NC_000913/474140‑474614 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |