| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 460,036 | C→T | G383G (GGC→GGT) | lon → | Lon protease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 460,036 | 0 | C | T | 94.4% | 45.0 / ‑5.7 | 18 | G383G (GGC→GGT) | lon | Lon protease |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (13/4); minor base A (0/1); total (13/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.78e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AAGACCTGCGTCAGGCGCAGGAAATCCTTGATACCGACCATTATGGTCTGGAGCGCGTGAAAGATCGAATCCTTGAGTATCTTGCGGTTCAAAGCCGTGTCAACAAAATCAAGGGACCGATCCTCTGCCTGGTAGGGCCGCCGGGGGTAGGTAAAACCTCTCTTGGTCAGTCCATTGCCAAAGCCACCGGGCGTAAATATGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGCGATCCGGCCTCTGCACTGCTTGAAGTGCTGGATCCAGAGCAGAAC > NC_000913/459819‑460234 | aaGACCTGCGTCAGGCGCAGGAAATCCTTGATACCGACCATTATGGTCTGGAGCGCGGGAAAGATCGAATCCTTGAGTAGCGTGCGGGTCAAAGCCGGGTCAACAAAATCAAGGGACCGATCCTCTGCCGGGTAGGGCTTCCGGGGGTAGGTAAAACCTCTCTGGGTTAGTCCATTGCCAAAGCCACCGGGCGTAAATATGTCCGTATGGCTCTGGGTGGCGTGCGTGATGAAGCGGAAATCCGTGGTCAc < 1:449047/251‑1 (MQ=255) aCCTGCGTCAGGCGCAGGAAATCCTTGATACCGACCATTATGGTCTGGAGCGCGTGAAAGATCGAATCCTTGAGTATCTTGCGGTTCAAAGCCGTGTCAACAAAATCAAGGGACCGATCCTCTGCCTGGTAGGGCCGCCGGGGGTAGGTAAAACCTCTCTTGGTCAGTCCATGGCCAAAGCCACCGGGCGTAAATATGTCCGTATGGCGCTGGGTGGCGTGCGTGATGAAGCGGAAATCCGTGGTCAccgc < 1:325505/251‑1 (MQ=255) gcgcGTGAAAGATCGAATCCTTGAGTATCTTGCGGTTCAAAGCCGTGTCAACAAAATCAAGGGACCGATCCTCTGCCTGGTAGGGCCGCCGGGGGTAGGTAAAACCTCTCTTGGTCAGTCCATTGCCAAAGCCACCGGGCGTAAATATGTCCGTATGGCGCTGGGTGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGATCCAGAAAATGGCg > 1:152448/1‑250 (MQ=255) cGAATCCTTGAGTATCTTGCGGTTCAAAGCCGTGTCAACAAAATCAAGGGACCGATCCTCTGCCTGGTAGGGCCGCCGGGGGTAGGTAAAACCTCTCTTGGTCAGTCCATTGCCAAAGCCACCGGGCGTAAATATGTCCGTATGGCGCTGGGTGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGa > 1:12351/1‑250 (MQ=255) aaTCCTTGAGTATCTTGCGGTTCAAAGCCGTGTCAACAAAATCAAGGGACCGATCCTCTGCCTGGTAGGGCCGCCGGGGGTAGGTAAAACCTCTCTTGGTCAGTCCATTGCCAAAGCCACCGGGCGTAAATATGTCCGTATGGCGCTGGgtggcg < 1:14400/155‑1 (MQ=255) aaaGCCGTGTCAACAAAATCAAGGGAACGATCCTCTGCCTGGTAGGGCCGCCGGGGGTAGGTAAAACCTCTCTTGGTCAGTCCATTGCCAAAGCCACCGGGCGTAAATATGTCCGTATGGCGCTGGGTGGCGTGCGTGATGAAGCGGAAATCCGTGGTCCCCGCCGTACTTACATCGGTTCTATGCCggg > 1:156677/1‑190 (MQ=255) cAAGGGACCGATCCTCTGCCTGGTAGGGCCGCCGGGGGTAGGTAAAACCTCTCTTGGTCAGTCCATTGCCAAAGACACCGGGCGTAAATATGTCCGTATGGCGCTGGGTGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAACTGTCTTCTg > 1:381939/1‑251 (MQ=255) cccGATCCTCTGCCTGGTAGGGCCGCCGGGGGTAGGTAAAACCTCTCTTGGTCATTCCATTGCCAAAGCCACCGGGCGTAAATATGTCCGTATGGCGCTGGTAGGCGTGCGTGATGAAGCGGAAATCCGTGGTCGCCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGATCCAGAAAATGGCTAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGc < 1:433182/250‑1 (MQ=255) nctctGCCTGGTAGGGCCGCCGGGGGTAGGTAAAACCTCTCTTGGTCAGTCCATTGCAAAAGCCACCGGGCGTACATATGTCCGTATGGCGCTGGGTGGCGTGCGTGATGAAGCGGACATCCGTGGTCACCGCCGTACTTACATCGGTTc > 1:90941/2‑150 (MQ=255) ccTCTGCCTGGTAGGGCCGCCGGGGGTAGGTAAAACCTCTCTTGGTCAGTCCCTTGAAAAAGCCACCGGGCGAAAATATGTCCGTATGGCGCTGGGTGGCGTGCGTGATGAAGCGGAAATCCGTGGTCAccgc > 1:416852/1‑133 (MQ=255) ccTCTGCCTGGTAGGGCCGCCGGGGGTAGGTAAAACCTCTCTTGGTCAGTCCATTGCCAAAGCCACCGGGCGTAAATATGTCCGTATGGCGCTGGGTGGCGTGCGTGATGAAGCGGAAATCCGTGGt > 1:3465/1‑127 (MQ=255) ggTAGGGCCGCCGGGGGTAGGTAAAACCTCTCTTGGTCAGTCCATTGCCAAAGCCACCGGGCGTAAATATGTCCGTATGGCGCTGGGTGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGATCCAGAAAATGGCGAAAGTGTGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGCGATCCGGcc < 1:146296/250‑1 (MQ=255) nccgGGGGTAGGTAAAACCTCTCTTGGTCAGTCCATTGCCAAAGCCACCGGGCGTAAATATGTCCGTATGGCGCTGGGTGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAAcc > 1:129752/2‑182 (MQ=255) gnngGGGGTAGGTAAAACCTCTCTTGGTCAGTCCATTGCCAAAGCCACCGGGCGTAAATATGTCCGTATGGCGCTGGGTGGCGTGCGtgat < 2:30201/91‑1 (MQ=255) gccgGGGGTAGGTAAAACCTCTCTTGGTCAGTCCATTGCCAAAGCCACCGGGCGTAAATATGTCCGTATGGCGCTGGGTGGCGTGCGtgat > 1:30201/1‑91 (MQ=255) ntCAGTCCATTGCCAAAGCCACCGGGCGTAAATATGTCCGTATGGCGCTGGGTGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGCGATCCGGCCTCTGCACTGCTTGAAGTGCTGGATCCAGAGCAGAAc > 1:271089/2‑251 (MQ=255) gTCCATTGCCAAAGCCACCGGGCGTANATATGTNNGTNTGGCGCTGGGTGGCGTGCGNGANNNANNNGNCATCCNTGNNCACCGCCGTNCTTACATCGGTTCTATGCCGGGTAAACTGATCCAGAAAATGGCGAAAGTGGGCNTGAAAAACCNNCTGTTCCTGCTCGATGAGATCNACANNANNTNTTCNGan > 2:94500/1‑192 (MQ=255) cATTGCCAAAGCCACCGGGCGTAAATATGTCCGTATGGCGCTGGGTGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATc > 1:70001/1‑94 (MQ=255) gTCCGTATGGCGCTGGGTGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGATCCAGAAAATGGCGAAAGTggg > 1:322780/1‑110 (MQ=255) | AAGACCTGCGTCAGGCGCAGGAAATCCTTGATACCGACCATTATGGTCTGGAGCGCGTGAAAGATCGAATCCTTGAGTATCTTGCGGTTCAAAGCCGTGTCAACAAAATCAAGGGACCGATCCTCTGCCTGGTAGGGCCGCCGGGGGTAGGTAAAACCTCTCTTGGTCAGTCCATTGCCAAAGCCACCGGGCGTAAATATGTCCGTATGGCGCTGGGCGGCGTGCGTGATGAAGCGGAAATCCGTGGTCACCGCCGTACTTACATCGGTTCTATGCCGGGTAAACTGATCCAGAAAATGGCGAAAGTGGGCGTGAAAAACCCGCTGTTCCTGCTCGATGAGATCGACAAAATGTCTTCTGACATGCGTGGCGATCCGGCCTCTGCACTGCTTGAAGTGCTGGATCCAGAGCAGAAC > NC_000913/459819‑460234 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |