| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,486,636 | G→A | G140D (GGC→GAC) | lptF → | lipopolysaccharide transport system protein LptF |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,486,636 | 0 | G | A | 100.0% | 41.3 / NA | 16 | G140D (GGC→GAC) | lptF | lipopolysaccharide transport system protein LptF |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (4/12); total (4/12) | |||||||||||
ATGGCGCAGCTTATCCTGCCATTAAGCCTGTTCCTCGGGCTGCTGATGACGCTGGGCAAACTGTATACCGAAAGTGAAATTACGGTAATGCATGCCTGCGGCCTGAGCAAAGCGGTTCTGGTGAAAGCGGCAATGATCCTTGCGGTATTCACGGCAATCGTAGCGGCGGTTAACGTGATGTGGGCGGGACCGTGGTCATCGCGTCATCAGGATGAAGTGTTAGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCTGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCTGTGGTGGTGGCCGATTCCGGACATTTAACCCAGCTGCGCGACGGCTCCCAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCAC > NC_000913/4486392‑4486864 | agggCGCAGCTTATCCTGCCATTAAGCCGGTTCCTCGGGCTGCTGATGACGCTGGGCAAACTGGATACCGAAAGTGAAATTACGGTAATGCATGCCTGCGGCCTGAGCAAAGCGGTTCGGGTGAAAGCGGCAATGAGCCGTGCGGTATTCACGGCAATCGTAGCGGCGGTTAACGTGAGGTGGGCGGGACCGTGGTCAGCGCGTCATCAGGATGAAGTGTTAGCAGAAGCGAAAGCGAACCCTGACATggn < 1:80118/249‑2 (MQ=255) tATCCTGCCATTAAGCCTGTTCCTCGGGCTGCTGATGACGCTGGGCAAACTGTAGACCGAAAGTGAAATTACTGTAATGCAGGCCTGCGGCCTGAGCAAAGCGGTTCTGGTGAAAGCGGCAATGATCCTTGCGGTATTCACGGCAATCGTAGCGGCGGTTAACGTGAGGTGGGCGGGACCGTGGTCAGCGCGTCAGCAGGATGAAGTGTTAGCAGAAGCGAAAGCGAACCCTGACATGGCGGCGCTgca < 1:411125/249‑3 (MQ=255) ggatgctgATGACGCTGGGCAAACTGTATACCGAAAGTGAAATTACGGTAATGCATGCCTGCGGCCTGAGCAAAGCGGTTCTGGTGAAAGCGGCAATGATCCTTGCGGTATTCACGGCAATCGTAGCGGCGGTTAACGTGATGTGGGCGGGACCGTGGTCATCGCGTCATCAGGATGAAGTGTTAGCAGAAGCGAAAGCGAACCCTGACATGGCGGCGCTGGCGCAAGGGCAATTCCAGCaan < 1:89214/240‑2 (MQ=255) aTTACGGTAATGCATGCCTGCGGCCTGAGCAAAGCGGTTCTGGTGAAAGCGGCAATGATCCTTGCGGTATTCACGGCAATCGTAGCGGCGGTTAACGTGATGTGGGCGGGACCGTGGTCAGCGCGTCATCAGGATGAAGTGTTAGCAGAAGCGAAAGCGAACCCTGACATGGCGGCGCTGGCGCAAGGGc < 1:337096/190‑1 (MQ=255) gcatgcCTGCGGCCTGAGCAAAGCGGTTCTGGTGAAAGCGGCAATGATCCTTGCGGTATTCACGGCAATCGTAGCGGCGGTTAACGTGATGTGGGCGGGACCGTGGTCATCGCGTCATCATGATGAAGGGTTAGCAGTAGCGAAAGCGAACCCTGACATGGCGGCGCTGGCGCAAGGTCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGTTGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGAtg < 1:401956/251‑1 (MQ=255) gCAAAGCGGTTCTGGTGAAAGCGGCAATGATCCTTGCGGTATTCACGGCAATCGTAGCGGCGGTTAACGTGATGTGGGCGGGACCGTGGTCATCGCGTCATCAGGATGAAGTGTTAGCAGAAGCGAAAGCGAACCCTGACATGGCGGCTCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCTGTTCATCGAAAGCGTTGACGGCAg < 1:450318/220‑1 (MQ=255) gCGGTTCTGGTGAAAGCGGCAATGATCCTTGCGGTATTCACGGCAAGCGTAGCGGCGGTTAACGTGATGTGGGCGGGACCGTGGTCATCGCGTCATCAGGATGAAGTGTTAGCAGAAGCGAAAGCGAACCCTGACATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCTGTTCATCGAAAGCGTTGACGGCAGCGATTTCa < 1:204320/223‑1 (MQ=255) ggTGAAAGCGGCAATGATCCTTGCGGTATTCACGGCAATCGTAGCGGCGGGTAACGGGAAGTGGGGGGGGACGGGGTGATCGCGGCATCCGGGTGGAGGGTTAGGAGAAGCGAAAGGGAACCCTGACATGGCGGGGGCGGCGGCAGGGCAATTTCAGCAAACGACCAATGGGAGCCCGGGGGCGTTCTTCGAAAACGGTGGCGGCAACGGGTTTAAAGAAGGGTTCCTCCCGCCAATTCGACCaaaaagg > 1:416575/1‑247 (MQ=255) gCGGTATTCACGGCAATCGTAGCGGCGGTTAACGTGATGTGGGCGGGACCGTGGTCATCGCGTCATCAGGATGAAGTGTTAGCAGAAGCGAAAGCGAACCCTGACATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGTTGCTGTTc < 1:100074/165‑1 (MQ=255) gTATTCACGGCAATCGTAGCGGCGGTTAACGTGATGTGGGCGGGACCGTGGTCATCGCGTCATCAGGATGAAGTGTGAGCAGAAGCGAAAGCGATCCCTGACATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCTGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGGTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCTGTGGTGGTGGc < 1:223080/251‑1 (MQ=255) gTATTCACGGCAATCGTAGCGGCGGTTAACGTGATGTGGGCGGGACCGTGGTCAGCGCGGCATCAGGATGAAGTGTTAGCAGAAGCGAAAGCGAACCCTGACATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCTGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAA‑GGTAATGCACGTCCTTCTGTGGTGGTGGcc < 1:134070/251‑1 (MQ=255) aaCGTGATGTGGGCGGGACCGTGGTCATCGCGTCATCAGGATGAAGTGTTAGCAGAAGCGAAAGCGAACCCTGACATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCTGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGAGGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCTGTGGTGGTGGCCGATTCCGGACATTTAACCCAGCTgc < 1:190964/250‑1 (MQ=255) gTGGTCATCGCGTCATCAGGATGAAGTGTTAGCAGAAGCGAAAGCGAAAAATGACATGACGGCGGTGGCGCAAGGGCAATTCAAGCAAGCGACTAATGGCAGATCGGTGCTGTTCATCGACAGCGCTGACGGCAGCGATTCCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCTGTGGTGGTGGCCGATTCCGGACATTTAACCCAGCTGCGCGCCGTCTCCCAGgtcgtc > 1:205745/1‑250 (MQ=255) gcgTCATCAGGATGAAGTGTTAGCAGAAGCGAAAGCGAACCCTGACATGGCGGCGCTGGCGCAAGGGCAATTCAAGCAAGCGACTAATGGCAGCTCGGTGCTGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCTGTGGTGGTGGCCGATTCCGGACATTTAACCCAGCTgcg > 1:450910/1‑222 (MQ=255) gCAGAAGCGAAAGCGAACCCTGACATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCTGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCTGTGGTGGTGGCCGATTCCGGACATTTAACCCAGCTGCGCGACGGCTCCCAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCAc > 1:202568/1‑251 (MQ=255) gaaagcgaaCCCTGACATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAAGGGCAGCTCGGTGCTGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCGCGTCCTTCTGTGGTGGTGGCCGATTCCGGACATTTAACCCAGCTGCGCGACGGCTCCCAGGTCGTCAc < 1:318447/213‑1 (MQ=255) | ATGGCGCAGCTTATCCTGCCATTAAGCCTGTTCCTCGGGCTGCTGATGACGCTGGGCAAACTGTATACCGAAAGTGAAATTACGGTAATGCATGCCTGCGGCCTGAGCAAAGCGGTTCTGGTGAAAGCGGCAATGATCCTTGCGGTATTCACGGCAATCGTAGCGGCGGTTAACGTGATGTGGGCGGGACCGTGGTCATCGCGTCATCAGGATGAAGTGTTAGCAGAAGCGAAAGCGAACCCTGGCATGGCGGCGCTGGCGCAAGGGCAATTCCAGCAAGCGACTAATGGCAGCTCGGTGCTGTTCATCGAAAGCGTTGACGGCAGCGATTTCAAAGATGTGTTCCTCGCGCAAATTCGACCAAAAGGTAATGCACGTCCTTCTGTGGTGGTGGCCGATTCCGGACATTTAACCCAGCTGCGCGACGGCTCCCAGGTCGTCACTCTCAACCAGGGAACGCGCTTCGAAGGCAC > NC_000913/4486392‑4486864 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |