| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,259,611 | G→A | A131A (GCC→GCT) | zur ← | DNA‑binding transcriptional repressor Zur |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,259,611 | 0 | G | A | 95.8% | 57.5 / NA | 24 | A131A (GCC→GCT) | zur | DNA‑binding transcriptional repressor Zur |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (8/15); minor base C (1/0); total (9/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.75e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.44e-01 | |||||||||||
ATCAGAAAGATCAGGCAGAAAAAGAGGTCGTGGATTGGGAAACCCGCAATGAATATCGCTGGTAATTAATCCCTCCTGCCCGACGTGTACAAGGATGTACGCCCTCTTAACGCGGTTTCTTTTTCACCTGCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAAACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACGTATGGGTGGGCTGATCGAACAGATGACAGAGCACATAACTGTTGGTGGATTCCACCTTATGCACAAAACCTTGCTCAAGCAGAAAATCCAGCGCGCGATAAACCGTTGGCGGCTTGGCTTGCGGTTCAGCTTCGCGCAGT > NC_000913/4259382‑4259854 | aTCAGAAAGATCAGGCAGAAAAAGAGGTCGTGGATTGGGAAACCCGCAATGAATATCGCTGGTAATTAATCCCTCCTGCCCGACGTGTACAAGGATGTACGCCCTCTTAACGCGGTTTCTTTTTCACCTGCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGAGCAAACCCCATTTTTgccgn < 1:274788/250‑2 (MQ=255) aaaCCCGCAATGAATAACGCTGGTAATTAAGCCCTCCTGCCCGACGTGTACAAGGATGTACGCCCTCTTAACGCGGTTTCTTTTTCACCTGCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGAGCAAACCCCATTTTTGCCGCCATCGTATGCATAATGTCTTCCACGCCTTCTGCACActct < 1:196512/251‑1 (MQ=255) cccGCAATGAATATCGCTGGTAATTAATCCCTCCTGCCCGACGTGTACAAGGATGTACGCCCTCTTAACGCGGTTTCTTTTTCACCTGCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGAGCAAACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTcc > 1:385190/1‑230 (MQ=255) ggTAATTAATCCCTCCTGCCCGACGTGTACAAGGATGTACGCCCTCGTAACGCGGTTTCTTTTTCACCTTCACAGAGTGATCATGCTGGCACTGTTCAGGATTACGACACGCTTCCACTTCTACACATTCCGCACAGATCCCATGTGCTTCAATCACATTATGCCGCAGAGCAAACCCCATTTTTGCCGCCAGCGTATTCATAATGTCGTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCg < 1:253817/250‑1 (MQ=255) gtACAAGGATGTACGCCCTCTTAACGCGGTTTCTTTTTCACCTGCACAGAGTGATCATGCTGGCACTGTTCAGAATGACGACACGCTTCCACTTCTACACATGCAGCACAGCGCCAATGTGCTTCAATCACATTATGCCGCAGAGCAATCCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACGtctg > 1:431772/1‑248 (MQ=255) gtaTGTACGCCCTCTTAACGCGGTTTCTTTTTCACCTGCACAGAGTGATCATGATGGAACTGTTAAGGATGACGACAAGCTTCCCATTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGAGCAAACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACGTAtgggtggg > 1:416580/3‑251 (MQ=255) aCGCCCTCTTAACGCGGTTTCTTTGTCGCCTGCACAGAGTGAGCGTGCGGGCGCTGTTCAGGATGACGACTCGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATTCCGCAGAGCAAACGCCATTGTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCGGCGGACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACGTATGGGTGGGCTGAt < 1:254002/250‑1 (MQ=255) gCCCTCTTAACGCGGTTTCTTTTTCACCTGCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAACCCATGTGCTTCAATCACATTATGACGCAGAGCAAACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACGTATGGGTGGGCTGATCg > 1:187840/1‑250 (MQ=255) ccTCTTAACGCGGTTTCTTTTTCACCTGCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGAGCAAACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCAc > 1:252632/1‑172 (MQ=255) gcgGTTTCTTTTTCACCGGCCCAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTGCCGCTTCTACACATGCCGCACAGAGCCCATGTGCTGCAAGCACATTATGCCGCAGAGCAAACCCCATTTTGGCCTCCAGCTTAGGCATAATGTCTGCCGCGGCTTCTTCACACTCGTCTATCACTgc < 1:367889/190‑1 (MQ=255) ttttCTCCGGCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACATAGCTCATGTGCTCCAAACACACTAGGCCGCAGAGCAAACCCCATTTTTGCCGCCAGCGTATGCGTAATGTCTACCACGCCTTCTGCACACTCGTCTTGCACTGCGCCGCAGCg < 1:299423/190‑1 (MQ=255) cACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGAGCAAACCCCATTTTTGCCGCCAGCGTATGCATAATGGCTTCCACGCCTTCTGCACACTCTTCGGTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACGTAtgggtgg < 1:385064/193‑1 (MQ=255) cTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGAGCAAACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACGTATGGGTGGGCTGATCGAACAGATGACAGAGCACATAACTGTTGGTGGATTCCACCTTATGCACAAAAc > 1:29078/1‑251 (MQ=255) cTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCAGCACAGAGCACATGTGCTTCACTAACATTATGCAGTAGAGCAAACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCAc > 1:323915/1‑123 (MQ=255) cTGTTCAGGATGACGACACGCTTCCACTNCTACACAGGCNGCANNGAGCNCNTNTGCTTCAATCACATTATGCCGCAGAGCAANCCCCATTTTTGCCGCCAGCGTGTNNTTNNNGTNNTCCAc < 2:323915/123‑1 (MQ=255) aGGATGACGACACGCTTCCACGTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGAGCAAACCCCAttttt < 1:409603/88‑1 (MQ=255) ngATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCATAGCAAACCCCATTTTTGCCGCCATCGTATg > 1:262806/2‑101 (MQ=255) ggATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAACCACAGTATGCCGCAGAGCAAACCCCATCTTTgccgactgcgtcgg < 2:262806/101‑11 (MQ=255) tACACATGCCGCACAGAGCCCATGTTCTTCAATCACATTATGCCGCAGAGCAAACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTGCCACGCCTTCGGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCtn < 1:48299/149‑2 (MQ=255) gCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGAGCAAACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTGCCACGCCTTCTGCACACTCTTCTTGCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACGTATGGGTGGGCGGATCGAACAGATGACAGAGCACATAACTGTTGGTGGATTCCACCTTATGCACAAAACCTTGCTCAAGCAGAAAATCCAGCGCGCGAt < 1:393978/244‑1 (MQ=255) cAATCACATTATGCCGCAGAGCAAACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACTTATGGGTGGGCTGATCGAACAGATGACAGAGCACATAACTGTTGGTGGATTCCACCTTATGcac < 1:288982/187‑1 (MQ=255) caTTATGCCGCAGAGCAAACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACGTATGGGTGGGCTGATCGAACAGATGACAGAGCACATAACTGTTGGTGGATTCCACCTTATGCACAAAACCTTg < 1:326545/190‑1 (MQ=255) caTTANNCCNNNGCNNAAACCCCATTTTTGCCGCCAGCGNATGCATAATGTCTTCCACGCCTTCTGCACNCNCNTCTTNNACTNCGCCGCAGCGNTCGCAAATAAACATGGCTGACGTATGGGTGGGCTGATCGAACAGATGANANAGCACATAACTGTTGGTGGCTTCAACCTTATNCACAAAACCTTg > 2:326545/1‑190 (MQ=255) gCCGCAGAGCAAACCCCATTTTTGCCGACAGCGTATGCATAATGTCTGCCACGCCGTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACAATGCTGACGTATGGGTGGGCTGATCTAACAGATGACAGAGCACAGAACGGTTGGTGGATTCCACTTTAGGCACAAAACCTTGCTGAAGCAGAAAAGCCAGCGCGCGAGAAACCGTTGGCGGCGTGGCGTGCGGTTCAGCTTCGCGCAGt < 1:445089/251‑1 (MQ=255) | ATCAGAAAGATCAGGCAGAAAAAGAGGTCGTGGATTGGGAAACCCGCAATGAATATCGCTGGTAATTAATCCCTCCTGCCCGACGTGTACAAGGATGTACGCCCTCTTAACGCGGTTTCTTTTTCACCTGCACAGAGTGATCATGCTGGCACTGTTCAGGATGACGACACGCTTCCACTTCTACACATGCCGCACAGAGCCCATGTGCTTCAATCACATTATGCCGCAGGGCAAACCCCATTTTTGCCGCCAGCGTATGCATAATGTCTTCCACGCCTTCTGCACACTCTTCTTTCACTGCGCCGCAGCGATCGCAAATAAACATGGCTGACGTATGGGTGGGCTGATCGAACAGATGACAGAGCACATAACTGTTGGTGGATTCCACCTTATGCACAAAACCTTGCTCAAGCAGAAAATCCAGCGCGCGATAAACCGTTGGCGGCTTGGCTTGCGGTTCAGCTTCGCGCAGT > NC_000913/4259382‑4259854 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |