| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,223,638 | T→C | intergenic (‑10/‑190) | iclR ← / → metH | DNA‑binding transcriptional repressor IclR/cobalamin‑dependent methionine synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,223,638 | 0 | T | C | 95.5% | 65.1 / ‑6.2 | 22 | intergenic (‑10/‑190) | iclR/metH | DNA‑binding transcriptional repressor IclR/cobalamin‑dependent methionine synthase |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (5/16); total (5/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
GGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTACTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCGTGGTGGTCGCTTTTACCACAGATGCGTTTATGCCAGTATGGTTTGTTGAATTTTTATTAAATCTGGGTTGAGCGTGTCGGGAGCAAGTGTGAGCAGCAAAGTGGAACAACTGCGTGCGCAGTTAAATGAACGT > NC_000913/4223448‑4223872 | gggTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTactg < 1:216258/250‑1 (MQ=255) gAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCATGCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGGGACCATGACAGTCTCCGTTTTCTGTATCGTGGAAATCATTTTCATTTTTAGTGTTAGCTAATGCAATAGTTACTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCgt < 1:7444/250‑1 (MQ=255) gCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTTTGCCGCGGTTCGCGGGGCTGGGGGCGGCCATGACCGTCTCctttttttttttcgtggg > 1:121669/1‑149 (MQ=255) gCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTGAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCAGGTTTTCTGCCCCGTCTCGCGGGAATGTGTGCGACCATGACAGTTTCCTTTTTCTGTATCGTGTAAATCATTGTCATGTTTATTTTTAGCTAATGCAATAGGTTCTGAACTGATCCGATGATTTAATGTTGAACAACTCTCATGTTGCGTGGTGGTCGCtt < 1:443422/249‑1 (MQ=255) ggATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGAAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTACTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCGtggtgg < 1:345941/237‑1 (MQ=255) cGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTACTGAACGGATCCGATGAGTGAATGTTGAACAAATCTCATGTTGCGTGGTGGTCGCTTTTACCACAGATg < 1:402482/250‑1 (MQ=255) nccACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGGTTTTTGCCGCGTTTCGCGGGGATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCTTTTTTTTTGTTAGCTAATGCAATAGTTTCTGGACTTGTCCGATGCGGTAATGTTTAACAAATCTCATGGTTCGGGGGGGGCGCTTTTACCCCCGATGGGGTTATGCCTGGTTGGTTTGTTGa > 1:113434/2‑250 (MQ=255) gcgTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTATATCGTGGAAATCATTTTCAGTTTTATTGTTAGCTAATGCAATAGTTACTGAACGGATCCGATGAGTTAATGGTGAACAAATCTCATGGTTCTTGGTGGGCGCTTTTTCCACAGATGCGTTTATGCCAGTATGGTTTGTTGAAttttt < 1:443897/251‑1 (MQ=255) gTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGTGTGCTTCCGCGTTTCGCGGGAATGGGGGCGACCATGTCAGTCTCCGTTTTCTGTATCGTGGAAATCATTTTCAGTTGTATTGTTAGCTAATGCAATAGTTactg < 1:173015/152‑1 (MQ=255) cTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTGTCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCGAATGCAATAGTTACTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGc < 1:255380/185‑1 (MQ=255) ccAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTGTCTGTATCGTGGAAATCATTTTCATTTGTATTGTTAGCTAATGCAATAGTTACTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCGGGGTGGTCGCTTTTACCACAGATGCGTTTATGCCAGTATGGTTTGTTGAATTTTTATTAAATCTGGGTTGAGCg < 1:432941/250‑1 (MQ=255) tGGTGCGGTGGCAACGGCGGGTTTTCTGTCGCGTTTCGCGTGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAAGCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTACTGAACTGATCCGATGAGTTAATTTTGAACAAATCTCATTTTGCGTGGTGGTCGCTTGTACCACAGATGCGTTTa < 1:187680/198‑1 (MQ=255) ggTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCCTTTTCATTTTTATTGTTAg > 1:168281/1‑89 (MQ=255) ggTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTACTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCGTGGTGGTCGCTTTTACCACAGATGCGTTTATGCCAGTATgg < 1:444375/190‑1 (MQ=255) gCCGCGTTTCGCGGGAATGGGTGCGACCATGACATTCTCCTTTTTCTGTATCGTGGAAATCATTTGCATTTTTATTGTGAGCTAATGCAATAGTTACTGAACTGATCCGATGAGTTAGTGTTGAGCAAAGCTCATGTTGCGtggtgg < 1:286923/147‑1 (MQ=255) gCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTACTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCgtggc > 1:18596/1‑144 (MQ=255) gCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTACTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCGTGGTGGTCGCTTTTACCACAGATGCGTTTATGCCAGTATGGTTTGTTGAATTTTTATTAAATCTGGGTTGAGCGTGTCGGGAGCAAGTGTGAGCAGCAAAGTGGaac < 1:233665/248‑1 (MQ=255) gcgTTTCGCGGGAATGGGTGCGACCNTNACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTNGCTAATGCAANAGTNNCTGANCNGNTCCGATTAGTTAATGTTGAACAAATCTCANGTTGCGTGGTGGTCGCTTTTACCNNAGNNNCGNNTATGc < 2:333323/171‑1 (MQ=255) gcgTTTCGCGGGAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGATAATGCAATAGTTACTGAACTGCTCCGATGCGTTAATGTTGAACAAATCTCATGTTGCGTGGTGGTCGCTTTTACCACAGATGCGTTTATGc > 1:333323/1‑171 (MQ=255) gggAATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTACTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCGTGGTGGTCGCTTTTACCACAGATGCGTTTATGCCAGTATGGTTTGTTGAATGTTTATTAAATCTGGGTTGAGc < 1:119618/202‑1 (MQ=255) nanTGNGTGCGNCCATNACAGTCTCCTTTTTCNGTATCGTGGAAATCATTTTNNTNTTTATNGTTAg < 2:168281/66‑1 (MQ=255) gACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTACTGCAATAGTTACTGAACTGATCCGATGAGTTACTGTTGAACAAATCTCATGTTGCGTGGTGGTCGCTTTTACCACAGATGCGTTTATGCCAGTATGGTTTGTTAAATTTTTATTAAATCTGGGTTGAGCGTGTCGGGAGCAAGTGTGAGCAGCAAAGTGGAACAACTGCGTGCGCAGTTAAATGAACGt > 1:205154/1‑250 (MQ=255) gccATGACAGGCTCCTTTTTCTGGATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTAGTGAACTGATCCGATGAGTGAATGTTGAACAAATCTCATGTTGCATGGGGGTCGCTTTGACCACAGATGCGTGTAGGCCAGTATTGTTTGTTGAATTTTTATTAAATCTGGGTTGAGCGTGTCGGGAGCAAGtgtg < 1:241467/206‑1 (MQ=255) | GGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTACTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCGTGGTGGTCGCTTTTACCACAGATGCGTTTATGCCAGTATGGTTTGTTGAATTTTTATTAAATCTGGGTTGAGCGTGTCGGGAGCAAGTGTGAGCAGCAAAGTGGAACAACTGCGTGCGCAGTTAAATGAACGT > NC_000913/4223448‑4223872 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |