| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,117,270 | G→A | P274L (CCT→CTT) | glpF ← | glycerol facilitator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,117,270 | 0 | G | A | 94.1% | 41.1 / NA | 18 | P274L (CCT→CTT) | glpF | glycerol facilitator |
| Reads supporting (aligned to +/- strand): ref base G (0/1); major base A (8/8); minor base C (1/0); total (9/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGGTGGCCCAGATTTCCATTGGGTCGTGTTCTACCCAACCTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCCTGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGTTTCCTTTTCTTCCACAACACAGATATCGCAAGGCAAATGGCGACCAATCAGTTTGCGGTAGGCAAATGCACCTACAATCGCGCCAACGATAGGGCCGAAAAGCGGCACCAGGAAGTAAGGAATGTCTCTGCCGCCGGTAAAGGCGACATTGCCCCAGCCCGCCAGCCAGGCAAAGACTTTCGGACCGAAGTCACGCGCTGGGTTCATGGCAAAAC > NC_000913/4117054‑4117495 | gggTGGTCCAGATTTCCATTGGGTCGTGTTCTACCCAACCTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCCTGGTCGGGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAAGAGTTGTGGTTTCCTTTTCTTCCacaacaa > 1:368846/1‑246 (MQ=255) ccAGATTTCCATTGGGTCGTGTTCTACCCAACCTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCCTGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAagag < 1:28689/213‑1 (MQ=255) ntACCCAACCTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGAGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCCTGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAAGAGTTGTGGTTTCCTTTTCTTCCACAACACAGATATCGCAAGGCAAATGGCGACCAATCAGttt > 1:267926/2‑251 (MQ=255) gCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCCTGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAAGAGTTGTGGTTTCCTTTTCTTCCACAACACAGATATCGCAAGGCAAATg < 1:149754/209‑1 (MQ=255) gCGACACGCTAATGATATTGGCATCGTGATCCATGACGACCGCGCGGGAGCTGGTGGTGCTCTGGTCGAGCGCAACGAGATAAGCTTTGTCAGTCATGTTTAATTGGCACGTAGGCATATTACAGCTAAGCTTTTTGTTCTGAAGGAGTTGTGGTTTCCCGTTCTAACGCAACACGGATACCGCAAGGCAAATTGTGTCTAATCAGTTTGCGGTAGGCAAATGCACCTACAATCGCGCCAACGATAggg < 1:208538/249‑1 (MQ=255) gACACGCTAATGATATTGGCATCGTGATCCCTTACGACGGCGCGGGAGCTGGTGGTGCCCTGGCCGTGCGAAACGATATATTTTTTTTCAGTCATGTTTAATTGGCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAAGAGTTGTGGTTTCTTTTTCTTCca > 1:170067/1‑167 (MQ=255) gACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCCTGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAAGAGTTGTGGTTTCCTTTTCTTCCACAACACAGATATCGCACGGCAAATGGCGACCAATCAGTTTGCGGTAGGCaaa > 1:250181/1‑219 (MQ=255) gCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCCTGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAATCTGTTTGTTCTTAAAGAGTTGTGTTTTCCTTTTCTTCCACAACACAGATATCGCAAGGCAAATGGCGACCAATCAGTTTGCGGTAGGCAAATGCACCTACAATCGCGCCAACGATAGGGCCGAAAAGc < 1:295270/251‑1 (MQ=255) tCCATTACGACCGCGCGGGAGCTGGTGGTGCCCTGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAAGAGTTGTgg > 1:259931/1‑125 (MQ=255) aCGACCGCGCGGGAGCTGGTGGTGCCCTGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGATCTGAAAGAGTTGTGGTTTCCTTTTCTTCCACAACACAGATATCGCAAGGCAAATGGCGACCAATCAGTTTGCGGTAGGCAAATGCACCTACAATCGCGCCAACGATAGGGCCGAAAAGCGGCACCAGGAAGTAAGGAATGTCTCTgc < 1:434472/251‑1 (MQ=255) cgGGAGCTGGTGGTGCCCTGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTACCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAAGAGTTGTgg > 1:386851/1‑110 (MQ=255) atTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAAGAGTTGTGGTTTCCTTTTCTGCCACAACACAGATATCGCAAGGCAAATGGCGACCAATCAGTTTGCGGTAGGCAAAGGCACCTACAATCGCGCCAACGATAAGGCCGAAAAGCTGCACCAGGAAGTAAGTAATGtc < 1:371981/200‑1 (MQ=255) tCAGTCATGTTTAATTGTCACGTAGTAATATTACAGCGCAGCTTTTTGTTCTGAACGAGTTGTGGTTTCCTTTTCTTCCACAACACAGATATCGCACGGCAAATg > 1:162052/1‑105 (MQ=255) tNNNNNGTANTCATATTACAGCGAAGCTTTTTGTTCTGAAAGAGTTGTGGTTTCCTTTTCTTCCACAACACAGATATCGCAAGGCAAATGGCGACCAATCAGTTTGCGGTAGGCAAATGCACCTACAATCGCGCCAACGagag < 2:267926/143‑4 (MQ=255) gTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAAGAGTTGTGGTTTCCTTTTCTTCCACAACACAGATATCGCACGGAAAATGGCGACCAATCAGTTTGCGGTAGGCAAATGCAc > 1:190177/1‑116 (MQ=255) atatTACAGCGAAGCTTTTTGTTCTGAAAGAGTTGTGGTTTCCTTTTCTTCCACAACACAGATATCGCAAgt < 1:125075/72‑2 (MQ=255) atTACNGCGAANCNNTTTGTTCTGACAGAGTTGTNGTTTCCTTTTCTTCCNCAACNCAGATNTCNcn > 2:194552/1‑66 (MQ=255) atTACAGCGAAGCTTTGTGTTCTGAAAGAGTTGTGGTTTCCTTTTCTTCCACAACACAGAGATCGCAAGGCAAATGGCGACCAAGCAGTTTGCGGTAGGCAAATGCACCTACAATCGCGCCAACGATAGGGCCGAAAAGc < 1:194552/140‑1 (MQ=255) tACAGCGAAGTTTTTTGTTCTGAAAGAGTGGTGGTTTCCTTTTCTTCCACAACACAGATATCGCAAGGCAAATGGCTATCAATCAGTTTGCGGGAGGCAAATGCACCTACAATCGCGCCAACGATAGGGCCGAAAAGCGGCACCAGGAAGTAAGGAATTTCTCTGCCGCCGGTAAAGTCGATATTGCCCTAGCCCGCCAGCCAGGCAAAGACTTTCGGACCGAATTCACGCGCTGGGTTCATGGCAAAAc < 1:294413/250‑1 (MQ=255) | GGGTGGCCCAGATTTCCATTGGGTCGTGTTCTACCCAACCTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCCTGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGTTTCCTTTTCTTCCACAACACAGATATCGCAAGGCAAATGGCGACCAATCAGTTTGCGGTAGGCAAATGCACCTACAATCGCGCCAACGATAGGGCCGAAAAGCGGCACCAGGAAGTAAGGAATGTCTCTGCCGCCGGTAAAGGCGACATTGCCCCAGCCCGCCAGCCAGGCAAAGACTTTCGGACCGAAGTCACGCGCTGGGTTCATGGCAAAAC > NC_000913/4117054‑4117495 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |