| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,116,753 | C→T | R157H (CGT→CAT) | glpK ← | glycerol kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,116,753 | 0 | C | T | 95.0% | 52.3 / ‑5.3 | 21 | R157H (CGT→CAT) | glpK | glycerol kinase |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (8/11); total (8/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 | |||||||||||
GTGCCGCCTTTGCCGCCAATGTTAGTCTGACCGTATACTTCGGAAGAACGACGCACTTCTGGCAGCATCTCGCGCGGAATATCCAGCACTTCCAGCATTTTGTCGTCCCAGTCCAGGGTATGGATGTTGAACAACATGGTACGAGAGGCGTTGGTGTAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGTGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTATTGCTGCGGATATAATCTTCTAAACCGTCACGTTTTAAATGCTCGCAGATTTCTGCGGTACGACGGCACTGCCAGACAATGGCGTTATAGATAGGCTTGCCGGTTTCTTTTTCCCAGACAATAGTGGTTTCACGCTGGTTCGTAATACCGATAGCTG > NC_000913/4116516‑4116996 | gTGCCGCCTTTGCCGCCAATGTTAGTCTGACCGTATACTTCGGAAGAACGACGCACTTCTGGCAGCATCTCGCGCGGAATATCCAGCACTTCCAGCATTTTGTCGTCCCAGTCCAGGGTATGGATGTTGAACAACATGGTACGAGAGGCGTTGGTGTAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGATGTGc < 1:352279/242‑1 (MQ=255) ccgccTTTGCCGCCAATGTTAGTATGACCGTATACTTCGGAAGAACGACGCACTTCTGGCAGCATCTCGCGCGGAATATCCAGCACTTCCAGCATTTTGTCGTCCCAGTCCAGGGTATGGATGTTGAACAACATGGTACGAGAGGCGTTGGTGTAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGATGTGCACGCTcgcg > 1:364269/1‑248 (MQ=255) aaTGTTAGTCTGACCGTATACTTCGGAAGAACGACGCACTTCTGGCAGCATCTCGCGCGGAATATCCAGCACTTCCAGCATGTTGTCGTCCCAGTCCAGGGTATGGATGTTGAACAACATGGTACGAGAGGCGTTGGTGTAATCGGTCACATGGACACGGCCCTGAGTCGTTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGATGTGCa < 1:249537/226‑1 (MQ=255) gaagaaCGACGCACTTCTGGCAGCATCTCGCGCGGAATATCCAGCACTTCCAGCATTTTGTCGTCCCAGTCCAGGGTATGGATGTTGAACAACATGGTACGAGAGGCGTTGGTGTAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGATGTGCACGCTCGCGAGAGCCTTCCACATGGTCGATGATCCACTTCACTTTGGTGcc < 1:340753/251‑1 (MQ=255) cgcgGAATATCCAGCACTTCCAGCATTTTGTCGTCCCAGTCCAGGGTATGGATGCTGAACAACATGGTAAGAGCGGCGTTGGAGTAATCGGTCACATGGACACGGCCCTGAGTCTTTTTCCAGCTAAGCCACGCATCAACAGTACCAATGAGCAATTCACCACGATGTGCACGCTCGCGAGAGCCTTCCACATGGCCGAGGATCCACTTCACTTTGGTGTCAGAAAAGTACGGGTCAATCACCAGACCgg > 1:441864/1‑250 (MQ=255) ttCCAGCATTTTGTCGTCCCAGTCCAGGGTATGGATGTTGAACAACATGGTACGAGAGGCGTTGGTGTAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGAtgtg < 1:300495/152‑1 (MQ=255) gggTATGGATGTTGAACAACATGGTACGAGAGGAGTTGGTGTAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGATGTGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCcact > 1:126664/1‑165 (MQ=255) aTGGATGTTGAACAACATTGTACGAGAGGCGTTGGTGTAATCGGTCACATGGACACGGCCCTGAGTCAGTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGATGTGCACGCTCGCGAGAGCCTTCCACATTGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTTAATCACCAGACCGGTATTGCTGCGGATATAATCTTCTAAACCGTCACGTTTTAAATGCTcn < 1:83411/250‑2 (MQ=255) aTGGATGTTGAACAACATGGTACGAGAGGCGTTGGTGTAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGATGTGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACGTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTATTGCTGCGGATATAATCTTCTAAACCGTCACGTTTTAAATGCTCGc < 1:395380/251‑1 (MQ=255) ggTACGAGAGGCGTTGGTGTAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGAtgtg > 1:340225/1‑104 (MQ=255) agagGCGTTGGTGTAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGATGTGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTATtgctgcn < 1:129562/189‑2 (MQ=255) ttGGTGTAATCGGTCACATGGACACGGCCCTGAGTCAGTTTCCATATATGCCACGTATCAACCGTACCAAACAGCAATTGACCACGATGGGCACGCTCGCGAGAGCCTTCCACAGGGTCGAGGATCCACTGCACTTTGGTGCCAGAAAAg < 1:180193/150‑1 (MQ=255) gTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCTACCGTACCAAACAGCAATTCACCACGATGTGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCGCCAGACCGGTATTGCGGCGGATATAATCTTCTAAACCGGCACGTTTTAAATGCTCGCAGATTTCTGCGGTACGACGGCACTGCCAGACAATGGcn < 1:55790/246‑2 (MQ=255) gCCCTGAGTCATTGTCCAGATAAGCCACGTATTAACCGGACCAAACATCAATTCACCACGAGGTGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACgg < 1:57576/129‑1 (MQ=255) cncTGAGTCATTTTCCAGCTAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGATGTGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTATTGCTGCGGATATAATCTTCTAAACCGTCACGTTTTAAATGCTAGCAGATTTCTGCGGTACGACGGCACTGCCAGACAATGGCGTTatag > 1:349242/1‑237 (MQ=255) gTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGATGTGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGt > 1:25322/1‑124 (MQ=255) gCCACGTATCAACCGTACCAAACAGCAATTCACCACGATGTGCACGCTCGCGagag > 1:444596/1‑56 (MQ=255) gCCACGTATCAACCGTACCAAACAGCAATTCACCACGATGTGCACGCTCGCGCGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGACAAGTACGGGTCAATCACCAGACCGGTATTGCTGCGGATATAATCTTCTAAACCGTCACGTTTTAAATGCTCGCAGATTTCTGCGGTACGACGGCACTGCCAGACAATGGCGTTATAGATAGGCTTGCCGGTTTCTTTTTc > 1:369547/1‑238 (MQ=255) tATCAACCGTACCAAACAGCAATTCACCACGATGTGCACGCTCGCTAGAGCCTTCCACATGTTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCg < 1:318733/116‑1 (MQ=255) nccGTACNNAACAGCAATTCACCACGATGTGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGt < 2:25322/96‑1 (MQ=255) ccGTACCAAACAGCAATTCACCACGATGTGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTATTGCTGCGGATATAATCTTCTAAACCGTCACGTTTTAAATGCTCGCAGATTTCTGCGGTACGACGGCACTGCCAGACAATGGCGTTATAGATAGGCTTGCCGGTTTCTTTTTCCCAGACAATAGTGTTTTCACGCTgg < 1:375337/251‑1 (MQ=255) aCNAAACAGCAATTCACCTCGACATGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCGTGTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTATTGCTGCGGATATAATCTTCTAATCCg < 2:263779/136‑1 (MQ=255) accacGATGTGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTATTGCTGCGGATATAATCTTCTAAACCGTCACGTTTTAAATGCTCGCAGATTTCTGCGGTACGACGGCACTGCCAGACAATGGCGTTATAGATAGGCTTGCCGGTTTCTTTTTCCCAGACAATAGTGGTTTCACGCTGGTTCGTAATACCGATAGCTg > 1:168792/1‑251 (MQ=255) | GTGCCGCCTTTGCCGCCAATGTTAGTCTGACCGTATACTTCGGAAGAACGACGCACTTCTGGCAGCATCTCGCGCGGAATATCCAGCACTTCCAGCATTTTGTCGTCCCAGTCCAGGGTATGGATGTTGAACAACATGGTACGAGAGGCGTTGGTGTAATCGGTCACATGGACACGGCCCTGAGTCATTTTCCAGATAAGCCACGTATCAACCGTACCAAACAGCAATTCACCACGACGTGCACGCTCGCGAGAGCCTTCCACATGGTCGAGGATCCACTTCACTTTGGTGCCAGAAAAGTACGGGTCAATCACCAGACCGGTATTGCTGCGGATATAATCTTCTAAACCGTCACGTTTTAAATGCTCGCAGATTTCTGCGGTACGACGGCACTGCCAGACAATGGCGTTATAGATAGGCTTGCCGGTTTCTTTTTCCCAGACAATAGTGGTTTCACGCTGGTTCGTAATACCGATAGCTG > NC_000913/4116516‑4116996 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |