| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,058,473 | G→A | D23N (GAC→AAC) | bipA → | 50S ribosomal subunit assembly factor BipA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,058,473 | 0 | G | A | 92.9% | 32.2 / NA | 14 | D23N (GAC→AAC) | bipA | 50S ribosomal subunit assembly factor BipA |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (6/7); minor base C (1/0); total (7/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGCGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAACCACCCTGGTAGACAAGCTGCTCCAACAATCCGGTACGTTCGACTCTCGTGCCGAAACCCAAGAGCGCGTGATGGACTCCAACGATTTGGAGAAAGAGCGTGGGATTACCATCCTCGCGAAAAACACCGCTATCAAATGGAATGATTACCGTATCAACATCGTTGATACCCCGGGGCACGCCGACTTCGGTGGTGAAGTTGAA > NC_000913/4058258‑4058664 | gACCTTTGGATCACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGAGCGATTAATCAGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAACCAACCTGGTAAACAAGCTGCTCCAACAATACGGTACGTTCGActct > 1:58619/1‑251 (MQ=255) tATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGCGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAAGTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAACCACCCTGGTAAACAAGCTGCTCCAACAATCCGGTACGTTCGACTCTCGTGCCGAAACCCAAGAgc < 1:410944/250‑1 (MQ=255) gAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGCGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAACCACCCTGGTAAACAAGCTGCTCCAACAATCCGGTACGTTCGACTCTCGTGCCGAAACCCAAGAGCGCGTGATGGAc > 1:37482/1‑251 (MQ=255) caAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGCGATTAATCCGTGTACAATAACGCGCTATTTCGAATGCCTGAGGCGAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAACCCCCCTGGTAAACAAGCTGCTCCAACAATCCGGTACGTTCGACTCTCGTGCCGAAACCCAAGAGCGCGTGATGGACTCCAACGAttt < 1:433952/251‑1 (MQ=255) gATCCTGTTTTGTAGTGCGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGGTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAACCACCCTGGTAAACAAGCTGCTCCACCAATCCGGTACGTTCTACTCTCGTGCCGAAACCCAAGAGCGCGTGATGGACTCCAACGATTTGGAGAAAGAGCGTGGGATTACCATCCTCGCCAAAAACAcc < 1:3872/251‑1 (MQ=255) tttGTAGTGCGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAACCACCCTGGTAAACAAGCTGCTCCAACAATCCGGTACGTTCGACTCGCGTGCCGAAACCCAAGAGCGCGTGATGGACTCCAACGATTTGTAGAAAGAGCGTGGGATTACCATc < 1:149315/228‑1 (MQ=255) ntAGTGCGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAACCACCCTGGTAAACAAGCTGCTCCAACAATCCGGTACGTTCGACTCTCGTGCCGAAACCCAAGAGCGCGTGATGGACTCCAACGATTTGGAGAAAGAGCGTGGGATTACCATCCTCGCGAAAAACACCGCTATCAAATg > 1:278229/2‑251 (MQ=255) cGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAACTTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAACCACCCTGGTAAACAAgctgct > 1:63028/1‑128 (MQ=255) ccGTGTACAATAACGCGCTATTTCTAATGCCTGAGTCAAAGTGGGGATCGAAAAAGTGCGTAAGATCGCCATCATCGCGCCCGTAGACCATGTTAAAACCACCCTGGAAAACAAGCTGCTCCAACAATCCGGTACTTTCGACTCTCGTGCCGAAACCCAAAAGCGCGTGATGGACTCAAACGATTTGGAGAAAGAGCGTGGGATTACCATCCTCGCGAAAAACACCGc < 1:249980/228‑1 (MQ=255) cGTGTACAATAAAGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAACCACCCTGGAAAACAAGCTGCTCCAACAATCCGGTACGTTCGACTCTCGTGCCGAAACCCAAGAGCGCGTGATGGACTCCAACGATTTGGAGAAAGAGCGTGGGATTACCATCCTCGCGAAAAACACCGATATCAAATGGAATGATTACCGTAt > 1:320123/1‑251 (MQ=255) cTAATGCCTGAGGCAAAGTTGTGATCGAAAAAGTGCGTAATATCGCCATCATCGCGCATGTATACCATGGTAAAACCACCCTGGTAAACATGCTGCTCCAACAATCCGGTACGt < 1:374899/114‑1 (MQ=255) gCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATAGCGCCATCATCGCGCACGTAGACCATGGTAAAACCACCCTGGTAAACAAGCTGCTCCAACAATCCGGTACGTTCGACTCTCGTGCCGAAACCCAAGAGCGCGTGATGGACTCCAACGATTTGGAGAAAGAGCGTGGGATTACCATCCTCGCGAAAAACACCGCTATCAAATGGAATGATTACCGTATCAACATCGTTGATACCCCGGGGCACg < 1:353672/250‑1 (MQ=255) aGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAACCACCCTGGTAAACAAGCTGCTCCAACAATCCGGTACGTTCGACTCTCGTGCCGAAACCCAAGAGCGCATGATGGACTCCAACGATTTGGAGAAAGAGCGTGGGAtt > 1:200888/1‑166 (MQ=255) aaaaaTTGCGTAATATCGCCATCATCGCGCACGTAGACAATCGTAAAACAACCCTGGCACCCAAGCGGCCCCCCCAATCCGGAAAGTTCGACTCTCGCGCCGCAACCCAAGAGCGCGTGATGGTCTCCACAGATATGGTGAAAGCGCGTGGGATTACCATCCTCGCGAACAACACCACTATTAAATGGCATGATTACCGTATCACCATCGATGATACCCCGGGGCACGCCCACTTCggcggccgaaacatg > 1:216483/1‑238 (MQ=255) cnccNTGGTANACAANCTGCTCCAACAAGCCNGTACGTTCGACTCTCGTGCNNANTCCCANGAgcg < 2:190166/66‑1 (MQ=255) | GACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGCGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAACCACCCTGGTAGACAAGCTGCTCCAACAATCCGGTACGTTCGACTCTCGTGCCGAAACCCAAGAGCGCGTGATGGACTCCAACGATTTGGAGAAAGAGCGTGGGATTACCATCCTCGCGAAAAACACCGCTATCAAATGGAATGATTACCGTATCAACATCGTTGATACCCCGGGGCACGCCGACTTCGGTGGTGAAGTTGAA > NC_000913/4058258‑4058664 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |