| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,889,668 | C→T | G313G (GGC→GGT) | tnaA → | tryptophanase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,889,668 | 0 | C | T | 93.8% | 35.0 / ‑3.6 | 16 | G313G (GGC→GGT) | tnaA | tryptophanase |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (6/9); total (6/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.65e-01 | |||||||||||
GCTGAAAACGCCTATTTCATCAAGCAGCGTGAAGCAGAATACAAAGACTGGACCATCGAGCAGATCACCCGCGAAACCTACAAATATGCCGATATGCTGGCGATGTCCGCCAAGAAAGATGCGATGGTGCCGATGGGCGGCCTGCTGTGCATGAAAGACGACAGCTTCTTTGATGTGTACACCGAGTGCAGAACCCTTTGCGTGGTGCAGGAAGGCTTCCCGACATATGGCGGCCTGGAAGGCGGCGCGATGGAGCGTCTGGCGGTAGGTCTGTATGACGGCATGAATCTCGACTGGCTGGCTTATCGTATCGCGCAGGTACAGTATCTGGTCGATGGTCTGGAAGAGATTGGCGTTGTCTGCCAGCAGGCGGGCGGTCACGCGGCATTCGTTGATGCCGGTAAACTGTTGCCGCATATCCCGGCAGACCAGTTCCCGGCACAGGCGCTGGCCTGCGAGCTGTATAAAGTC > NC_000913/3889423‑3889893 | gCTGAAAACGCCTATTTCATCAAGTAGCGTGAAGCAGAATACAAAGACTGGACCATCGAGCAGATCACCCGCGAAACCTACAAATATGCCGATATGCTGGCGATGTCCGCCAAGAAAGATGCGATGGTGCCGATGGGCGGCCTGCTGTGCATGCAAGACGACAGCTTCTTTGATGTGTACACCGAGTGCAGAACCCTTTGCGTGGTGCAGGAAGGCTTCCCGACATATGGCGGCCTGGAAGGCGGtgcgct > 1:106500/1‑249 (MQ=255) aaaCGCCTATTTCATCAAGCAGCGTGAAGCAGAATACAAAGACTGGACCAGCGAGCAGAACACCCGCGAATCCTACAAATATGCCGATAGGCTGGCGATGTCCGCCAAGAAAGATGCGATGGTGCCGATGGGCTGCCTGCTGTGCATGAAAGACGATAGCTGCTCTGATGTGTACACCGAGTGCAGAACCCGTTGCGTGGTGCAGGAAGGCGGCCCGACATATGGCGGCCTGGAAGGCGGCGCGATGGAGc < 1:380687/251‑1 (MQ=255) catcaATCAGCGTGAAGCAGAATACAAAGACTGGACCATCGAGCAGATCACCCGCGAAACCTACAAATATGCCGATATGCTGGCGATGTCCGCCAAGAAAGATGCGATGGTGCCGATGGGCGGCGTGCTGTGCATGAAAGACGACAGCTTCTTTGAGGTGTACACCTATTGCAGAACCCTTTGCTTTGTGCGGGAAGGCTTCCCGACATATTGCGGCCTGGAAGGCGGTGCGATGGAGCGTCGGGCGGTAg < 1:310864/251‑1 (MQ=255) aCCATCGAGCAGATCACCCGCGAAACCTACAAATATGCCGATATGCTGGCGATGTCCGCCAAGAAAGATGCGATGGTGCCGATGGGCGGCCTGCTGTGCATGAAAGACGACAGCTTCTTTGATGTGTACACCGAGTGCAGAACCCTTTGCGTGGTGCAGGAAGGCTTCCCGACATATGGCGGCCTGGAAGGCGGTGCGATGGAGCGTCTGGCGGTAGGTCTGTATGACGGCATGAATCTCGACtggctggc < 1:365932/251‑1 (MQ=255) cAGATCACCCGCGAAACCTACAAATATGCCGATATGCTGGCGATGTCCGCCAAGGAAGATGCGCTGGTGCCGATGGGCGGCCTGCTGTGCATGAAAGACGACAGCTTCTTTGATGTGTACACCGAGTGCAGAACCCTTTGCGTGGTGCAGGAAGGCTTCCAGACATATGGCGGCCTGGAAGGCGGTGCGATGGAGCGTATGGCGGTAGGTCTGTATGACGGCATGaa > 1:66055/1‑227 (MQ=255) gTCCGCCAAGAAAGATGCGATGGTGCCGATGGGCGGCCTGCTGTGCATGAAAGACGACAGCTTCTTTGATGTGTACACCGAGTGCAGAACCCTTTGCGTGGTGCAGGAAGGCTTCCCGACATATGGCGGCCTGGAAGGCTGTGCGATTGAGCGTCTGGCGGTAGGTCTGTATGAc < 1:375187/175‑1 (MQ=255) gCGATGGTGCCGATGGGCGGCCTGCGGTGCATGAAAGACGACAGCTTCTTTGATGTGTACACCGAGTGCAGAAGCCTTTGCGTGGTGCAGGAAGGCTTCCCATCATATGGCGGCCTGGAAGGCGGTGCGATGGAGCGTCTGGCGGTAGGGCTGTATGACGGCATGAATCTCGACGGGCGGGGTTAGCGTATCGCGCAGTTTCAGTATCTGGTCGATGGTCTGGAAGAGATTGGCGTTGTCTGCCAGCAgg < 1:448564/250‑1 (MQ=255) ttGCGTGTTGCAGGAAGGCTTCCCGACATATGGCGGCCTGGAAGGCGGTGCGATGGAGCGGCTGGCGGTAGGTCTGTATGACGGCATGAATCTCGACTGGCTGGCTTATCGTATCGCGCAGGTACAGTATCTGGTc < 1:366170/136‑1 (MQ=255) gAAGGCTTCCCGACATATGGCGGCCTGGAAGGCGGTGCGATGGAGCGTCTGGCGGTAGGTCTGTATGACGGCATGAATCTCGACTGGCTGGCTTATCGTATCGCGCAGGTACAGTATCTGGTCGATGGTCTGGAAGAGATTGGCGTTGTCTGCCAGCAggcgggcg < 1:308714/166‑1 (MQ=255) cTTCCCGACATATGGCGGCCTGGAAGGCGGTGCGGTGGAGCGTCTGGCGGTAGGTCTGTACGACGCCATGAATCTCGACTGGCTGGCTTATCGTATCGCGCAGGTCCAGTATCTGGTAGATGGTCTGGAGGAGATTGGCGTTGTCTGCCCGCAGGCGGGCGGTCACGCGGCATTCGTTGATGCCGGTAAACTGTTGCCGCAACTCCCGGCAGACCAGTTCCCGGCCCAGGCGCTGGCCTGCGCGCTGtat > 1:201343/1‑250 (MQ=255) cGACATATGGCGGCCTGGAAGGCGGTGCGATGGAGCGTATGGCGGTAGGTCTGTATGACGGCATGa > 1:173770/1‑66 (MQ=255) gACATATGGCGGCCTGGAAGGCGGTGNGATGGANNGTNTGGCGGTAGGTCTGTATGANGGNNNGNNNCNAGACTNGCNNGCTTATCGTNTCGCGCAGGTACAGTATCTGGTTGATGGTCTGGCAGAGATTGGCGTTGTCTGCNAGCcggcgg > 2:98322/1‑152 (MQ=255) gACATATGGCGGCCTGGAAGGCGGTGCGATGGAGCGTCTGGCGGTAGGTCTGTATGACGGCATGAATCTCGACTGGCTGGCTTATCGTATCGCGCAGGTACAGTATCTGGTTGATGGTCTGGAAGAGATTGGCGTTGTCTGCCAGCAggcgg < 1:98322/152‑1 (MQ=255) aCNTATGGNGGCCNGGAAGGCGGTGCGATNGAGCGTCTGGCGGTAGGTCNNTNTTACGNCATGa < 2:173770/64‑1 (MQ=255) ntGGAAGGCGGTGCGATGGAGCGTCTGGCGGTAGGTCTGTATGACGGCATGAATCTCGACTGGCTGGCTTATCGTATCGCGCAGGTACAGTATCTGGTCGATGGTCTGGAAGAGATTGGCGTTGTCTGCCAGCAGGCGGGCGGTCACGCGGCATTCGTTGATGCCGGTAAACTGTTGCCGCATATCCCGGCAGACCAGTTCCCGGCACAGgc > 1:273164/2‑212 (MQ=255) cTGGAAGGCGGTGCGATGGAGCGTCTGGCGGTAGGTCTGTATGACGGCATGAATCTCGACGGGCTGGCTTATCGTATCGCGCAGGTGCAGGATCTGGTCTATGGTCTTGAAGAGAGTGGCGTTGTCTGCCAGCAGGGGGGCGGTCACGCGGCATTCGTTGATGCCGGGAAACTGCTGCCGGATATCCCGGCAGACCAGTTCCCGGCACAGGCGCTGGCCTGCGAGCTGTATAAAGTc < 1:230088/237‑1 (MQ=255) ggAAGGCGGTGCGATGGAGCGTCTGGCGGTAGGTCTGTCTGACGGCATGAATCTCGACTGGCTGGCTTATCGTATCGCGCAGGTACAGTATCTGGTCGCTGGTCTGGAAGCGATTGGCGTTGTCTGCcag > 1:64728/1‑130 (MQ=255) | GCTGAAAACGCCTATTTCATCAAGCAGCGTGAAGCAGAATACAAAGACTGGACCATCGAGCAGATCACCCGCGAAACCTACAAATATGCCGATATGCTGGCGATGTCCGCCAAGAAAGATGCGATGGTGCCGATGGGCGGCCTGCTGTGCATGAAAGACGACAGCTTCTTTGATGTGTACACCGAGTGCAGAACCCTTTGCGTGGTGCAGGAAGGCTTCCCGACATATGGCGGCCTGGAAGGCGGCGCGATGGAGCGTCTGGCGGTAGGTCTGTATGACGGCATGAATCTCGACTGGCTGGCTTATCGTATCGCGCAGGTACAGTATCTGGTCGATGGTCTGGAAGAGATTGGCGTTGTCTGCCAGCAGGCGGGCGGTCACGCGGCATTCGTTGATGCCGGTAAACTGTTGCCGCATATCCCGGCAGACCAGTTCCCGGCACAGGCGCTGGCCTGCGAGCTGTATAAAGTC > NC_000913/3889423‑3889893 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |