Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,837,106	G→A	V52I (GTA→ATA)	setC →	putative arabinose exporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,837,106	0	G	A	100.0%	29.6 / NA	12	V52I (GTA→ATA)	setC	putative arabinose exporter
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (6/6);  total (6/6)

GACTGGTACTTATTTGTAACTCAGTTATATTTTTTCGCCCGGTGATTCAGAAGAATGCAAAAAACGGCTACCACTCCATCAAAAATACTTGATCTCACTGCCGCGGCATTTTTACTTGTCGCCTTTCTGACGGGTATTGCGGGCGCTCTTCAGACTCCTACCCTAAGTATATTCCTCGCAGATGAACTGAAAGCCCGTCCTATAATGGTAGGTTTTTTCTTCACCGGTAGCGCTATTATGGGAATTCTGGTCAGTCAATTTCTGGCAAGGCACTCCGATAAACAAGGCGACCGTAAATTACTGATTCTGCTATGTTGCTTATTTGGAGTGCTGGCCTGCACGCTTTTTGCGTGGAATCGCAACTACTTCATTCTCCTCTCAACGGGCGTACTTCTGAGTAGTTTTGCTTCCACCGCAAACCCGCAAATGTTCGCCCTCG  >  NC_000913/3836899‑3837337                                                                                                                                                                                                                |                                                                                                                                                                                                                                        gACTGGTACTTATTTGTAACTCAGTTATATTTTTTCGCCCGGTGATTCAGAAGAATGCAAAAAACGGCTACCACTCCATCAAAAATACGTGATCTCACTGCCGCGGCATTTTTACTTGTCGCCTGTCTGACGGGTATTGCTGGCGCTCTTCAGACTCCTACCCTAAGTATATTCCTCGCAGATGAACTGAAAGCCCGGCCTATAATGATAGGGTTTTTCTTCACCGGTAGCGCTATTATGGGAATTCttgt                                                                                                                                                                                              <  1:430856/251‑4 (MQ=255)      gTACTTATTTGTAACTCAGTTATATTTTTTCGCCCGTTGATTCAGAAGAATGCAAAAAACGGCTACCACTCCATCAAAAATACGTGATCTCACTGCCGCGGCATTTTTACTTGTCGCCTTTCTAACGGGTATTGCGGGCGCTCTTCATACTCCTACCCTAAGTATATTCCTCGCAGATGAACTGAAAGCCCGTCCGATAATGATAGGTTTTTTCTTCACCGGTAGCGCTATTATGGGAATTCTGgtcagtc                                                                                                                                                                                         <  1:61997/251‑1 (MQ=255)                                                                                                cACTGCCGCGGCATTTTTACTTGTCGCCTTTCTGACGGGTATTGCGGGCGCTCTTCAGACTCCTACCCTAAGTATATTCCTCGCAGATGAACTGAAAGCCCGTCCTATAATGATAGGTTTTTTCTTCACCGGTAGCGCTATTATGGGAATTCTGGTCAGTCAATTTCTGGCAAGGCACTCCGATAAACAAGGCGACCGTAAATTACTGATTCTGCTATGTTGCTTATTTGGAGTGCTGGCCTGCAc                                                                                                    <  1:186837/246‑1 (MQ=255)                                                                                                                                                                   cTAAGTCTATTCCTCGCAGATGAACTGAAAGCCCGTCCTATAATGATAGGTTATTACTTCTCCCGTCGGGCTATTATGGGCATTCTGGTCCGTCACCTTCTGGCCAGGAACTCCGCTAAACACGGCGACCGTAAATTAATGATTCTGCTATGTTGCTTATTTGGAGTGCTGGCCTGCACGCTTTTTGCGTGGAAt                                                                                    >  1:68422/1‑195 (MQ=255)                                                                                                                                                                     aaGTATATTCCTCGCAGATGAACTGAAAGCCCGTCCTATAATGATAGGTTTTTTCTTCACCGGTAGCGCTATTATGGGAATTCTGGTCAGTCAATTTCTGGCAAGGCACTCCGATAAACAAGGCGACCGTAAATTACTGATTCTGCTATGTTGCTTATTTGGAGTGCTGTCCTGCACGCTTTTTTCTTTGAATCGCAACTACTTCATTCTCCTCTCAACGGGCGTACTTCTGAGTAGTTTTGCTTCCAcag                          <  1:407522/251‑3 (MQ=255)                                                                                                                                                                       cgatgctgtggaagagtGAACTGAAAGCCCGTCCTATAATGATAGGTTTTTTCTTCACCGGTAGCGCTATTATGGGAATTCTGGTCAGTCAATTTCTGGCAAGGCACTCCGATAAACAAGGCGACCGTAAATTACTGATTCTGCTATGTTGCTTATTTGGAGTGCTGGCCTGCACGCTTTTTGCGTGGAATCGCAACTACTTCATTCTCCTCTCAACGGGCGTACTTCTGAGTAGTTTTGCTTCCACCGcn                        <  1:270161/235‑2 (MQ=255)                                                                                                                                                                            ttCCGCGCAGATGAACTGAAAGCCCGTCCTATAATGATAGGTTTTTTCTTCACCGGTAGCGCTATTATGGGAATTCTGGTCAGTCAATTTCTGGCAAGGCACTCCGATAAACAAGGCGACCGTAAATTACTGTNTCTNNNNNGtnnnnnnnnnn                                                                                                                    >  2:279330/1‑144 (MQ=255)                                                                                                                                                                                             gAAAGCCCGTCCTATAATGATAGGTTTTTTCTTCACCGCTAGCGCTATTATGGGACTTCTGGTCAGTCAATTTCTGGCAAGGCACTCCGATAAACAAGGCGACCGTAAATTACTGATTCTGCTATGTTGCTTATTTGGAGTGCTGGCCTGCACGCTTTTTGCGTGGAATCGCAACTACTTCATTCTCCTCTCAACGGGCGTACTTCTGAGTAGTTTTGCTTCCACCGCAAACCCGCAAATGTtcgccctcg  >  1:390703/1‑251 (MQ=255)                                                                                                                                                                                                    cGTCCTATAATGATAGGTTTTTTCTTCACCGGTAGCGCTATTATgg                                                                                                                                                                                                        >  1:70720/1‑46 (MQ=255)                                                                                                                                                                                                    cGTCCNATAATGATAGGTTTTTTCTTCACCGGTANCGCTATTATgg                                                                                                                                                                                                        <  2:70720/46‑1 (MQ=39)                                                                                                                                                                                                       ccTATAATGATAGGTTTTTTCTTCACCGGTAGCGCTATTATGGGAATTCTGGTCAGTCAATTTCTGGCAAGGCACTCCGATAAACAAGGCGACCGTAAATTACTGATTCTGCTATGTTGCTTATTTGGAGTGCTGGCCTGCACGCTTTTTGCGTGGAATCGCAACTACTTCATTCTCCTCTCAACggg                                                       >  1:296275/1‑188 (MQ=255)                                                                                                                                                                                                        cTATAATGATAGGTTTTTTCTTCACCGGTAGCGCTATTATGGGAATTCTGGTCAGTCAATTTCTGGCAAGGCACTCCGATAAACAAGGCGACCGTAAATTACTGATTCTGCTATGTTGCTTATTTGGAGTGCTGGcc                                                                                                         >  1:154432/1‑137 (MQ=255)                                                                                                                                                                                                                |                                                                                                                                                                                                                                        GACTGGTACTTATTTGTAACTCAGTTATATTTTTTCGCCCGGTGATTCAGAAGAATGCAAAAAACGGCTACCACTCCATCAAAAATACTTGATCTCACTGCCGCGGCATTTTTACTTGTCGCCTTTCTGACGGGTATTGCGGGCGCTCTTCAGACTCCTACCCTAAGTATATTCCTCGCAGATGAACTGAAAGCCCGTCCTATAATGGTAGGTTTTTTCTTCACCGGTAGCGCTATTATGGGAATTCTGGTCAGTCAATTTCTGGCAAGGCACTCCGATAAACAAGGCGACCGTAAATTACTGATTCTGCTATGTTGCTTATTTGGAGTGCTGGCCTGCACGCTTTTTGCGTGGAATCGCAACTACTTCATTCTCCTCTCAACGGGCGTACTTCTGAGTAGTTTTGCTTCCACCGCAAACCCGCAAATGTTCGCCCTCG  >  NC_000913/3836899‑3837337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑