| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,835,828 | G→A | F34F (TTC→TTT) | yicJ ← | putative xyloside transporter YicJ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,835,828 | 0 | G | A | 96.2% | 70.5 / NA | 26 | F34F (TTC→TTT) | yicJ | putative xyloside transporter YicJ |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (10/15); minor base C (1/0); total (11/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.23e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
CTGCATAGATCATTTTGCCGTTCATACTGAGATCTGGCGTGCTATAGGCCAGTACACAGACGATCCCGAATGGCAGTGCGCCAAACAGTACCCACGGACGAAATTTACCCCAGCGAGAGCGCGTTCGATCGGCCAACAACCCCATGCAAGGATCGGAAATCGCATCCAGTGCACGAGCGACCAAAAACATGGTTCCGACAAAACCGGCAGGAATGCCAAAAATATCGGTATAAAAGAACATCATATATAACATTACGTTATCGAAAATAATGTGGCTGGCGGCGTCTCCCATGCCATAACCAATTTTCTCTTTAACGGACAACACTTCACTCTTCATCTGCTTTTCCTTGATGCTATAGGGGTGCTGAGACCGATAACGCATTTTGTAAACCATCCCTGTGAGAGCGAATATTCCGATATCTG > NC_000913/3835593‑3836015 | ctgcATAGATCATTTTGCCGTTCATACTGAGATATGGCGTGCTATAGGCCAGTACACAGACGATCCCGAATGGCAGTGCGCCAAACAGTACCCACGGACGAAATTTACCCCAGCGAGAGCGCGTTCGATCGGCCAACAACCCCATGCAAGGATCGGCAATCGCATCCAGTGCACGAGCGACCAAAAACATGGTTCCGACAAAACCGGCAGGAATGCCAAAAATATCGGTATAAAAAAACATCATATATaa > 1:103507/1‑250 (MQ=255) ntGAGATCTGGCGTGCTATAGGCCAGTACACAGACGATCCCGAATGGCAGTGCGCCAAACAGTACCCACGGACGAACTTTACCCCAGCGAGAGCGCGTTCGATCGGCCAACAACCCCATGCAAGGATCGGAAATCGCATCCAGTGCACGAGCGACCAAAAACATGGTTCCGACAAAACCGGCAGGAATGCCAAAAATATCGGTATAACAAAACATCATATATAACCTTACGTTATCGAAAATAATGtggct > 1:42335/2‑251 (MQ=255) ataGGCCAGTACACAGACGATCCCGAATGGCAGTGCGCCAAACAGTACCCACGGACGAAATTTACCCCAGCGAGAGCGCGTTCGATCGGCCAACAACCCCATGCAAGGATCGGAAATCGCATCCAGTGCACGAGCGACCAAAAACATGGTTCCGACAAAACCGGCAGGAATGCCAAAAATATCGGTATAAAAAAACATCATATATAACATTATGTTATCGAAAATAATGTGGCTGGCGGCGTCTCCCATGc < 1:408827/251‑1 (MQ=255) aGGCCAGTACACAGACGATCCCGAATGGCAGTGCTCCAAACATTACCCACGGACGAAATTTACCCCAGCGATAGCGCGTTCGATCGGCCAACAACCCCATGCAAGGATCGGAAATCGCATCCAGTGCACGAGCGACCAAAAACATGGTTCCGACAAAACCGGCAGTAATGCCAAAAATATCGGTATAAAAAAACATCATATATAACATTACGTTATCGAAAATAATGTGGCTGGCGGCGTCTCCCATGcn < 1:112617/250‑2 (MQ=255) cAGTACACAGACGATCCCGAATGGCAGTGCGCCAAACAGTACCCACGGACGAAATTTACCCCAGCGAGAGCGCGTTCGATCGGCCAACAACCCCATGCAAGGATCGGAAATCGCATCCAGTGCACGAGCGACCAAAAACATGGTTCCGGCAAAACCGGCAGGAATGCCAAAAATATCGGTATAAAAAAACATCATATATAACATTACGTTATCGAAAATAATGTGGCTGGCGGCGTCTCCCATGCCATAAc < 1:209114/251‑1 (MQ=255) ccGAATGGCAGTGCGCCAAACAGTACCCACGGACGAAATTTACCCCAGCGAGAGCGCGTTCGATCGGCCAACACCCCCATGCAAGGATCGGAAATCGCATCCAGTGCACGAGCGACCAAAAACATGGTTCCGACAAAACCGGCAGGAACGCCAAAAATATCGGTATAAAAAAACATCATATATAACATTACGTTATc > 1:448615/1‑197 (MQ=255) gTACCCACGGACGAAATTTACCCCAGCGAGAGCGCGTTCGATCGGCCAACAACCCCATGCACGGATCGGAAATCGCATCCAGTGCACGAGCGACCAAAAACATGGTTCCGACAAAACCGGCAGGAATGCCAAAAATATCGGTATAAAAAAACATCATATATAACATTACGTTATCGAAAATAATGTGGCTGGCGGCGTCTCCCATGCCATAACCAATTTTCTCTTTAACGGACAACACTTCACTCTTCATc > 1:416157/1‑251 (MQ=255) cGAAATTTACCCCAGAGCGAGCGCGTTCGATCGCCCAACACCCCCATGCAAGGATCGGAAATCGCATCCAGTGCACGAGCGACCCAAAACATGGTTCCGACAAAACCGGCAGGAATGCCAAAAATATCGGTATAAAACAACCTCATATATAACATTACGTTATCGAAAATAATGTGGCTGGCGGCGTCTCCCATGCCATAACCAATTTTCTCTTTAACGGACAACACTTCACTCTTCATCTGCTTTTCCtt > 1:368363/1‑251 (MQ=255) gagCGCGTTCGATCGGCCAACAACCCCATGCAAGGATCGTAAATCGCATCCAGTGCATGAGCGACCAAAAACATGGTTCCGACAAAACCGGCAGGAATGCCAAAAATATCGGTATAAAAAAACATCATATATAACATTACGTTATCGAAAATAATGTGGCTGGCTGCGTCTCCCATGCCATAACCAATTTTCTCTTTAACGGACAACACTTCTCTCTTCATCTGCTTTTCCTTGATGCTATAGGGGTGCtn < 1:83671/251‑2 (MQ=255) gcgcGTTCGATCGGCCAACAACCCCATGCAAGGATCGGAAATCGCATCCAGTGCACGAGCGACCAAAAACATGGTTCCGACAAAACCGGCAGGAATGCCAAAAATATCGGTATAAAAAAACATCATATATAACATTACGTTATCGAAAATAATGTGGCTGGCGGCGtctc > 1:31773/1‑170 (MQ=255) cgagcGGCCAACAACCCCATGCAAGGATCGGAAATCGCATCCAGTGCACGAGCGGCCAAAAACATGGTTCCGACAAAACCGGCAGGAATGCCAAAAATAGCGGTATAAAAAAACATCAGATATAACATTACGTTATCGAAAATAATTTTGCTTGCGGCGTCTTCCGTGCCATAGCCAGTTGTGTCGTTAACGGACAACACTGCACTCTTCATCGGCTTTTCCTTGATGCTATAGGGGTGCTGAGACCGATa < 1:423309/247‑1 (MQ=255) gATCGGCCAACAACCCCATGCAAGGATCGGAAATCGCATCCAGTGCACGAGCGACCAAAAACATGGTTCAGACAACACCGGCAGGAATGCCAAAAATATCGGTATAAAAAAACATCATATATACCATTACGTTATCGAAAATAATGTGGCTGGCGGCGTCTCCCATGCCATAACCAATTTTCTCTTTAACGGACAACACTTCACTCTTCATCTGCTTTTCCTTGATGCTATAGGGGTGCTGAGACCGATa > 1:168530/1‑250 (MQ=255) ncaacaaCCCCATGCAAGGATCGGAAATCGCATCCAGTGCACGAGCGACCAAAAACATGGTTCCGACAAAACCGGCAGGAATGCCAAAAATATCGGTATAAAAAAACATCATATATAACATTACGTTATCGAAAATAATGtggctggc > 1:88692/2‑148 (MQ=255) cccATGCAAGGATCGGAAATCGCATCCAGTGCACGAGCGACCAAAAACATGGTTCCGACAAAACCGGCAGGAATGCCAAAAATATCGGTATAAAAAAACATCATATATAACATTACGTTATCGAAAATAAGGTGGCTGGCGGCGTCTCCCATGCCATAACCAATTTTCTCTTTAACGGACAACACTTCACGCTTCATCTTCTTTTCCTTGATGCTATAGGGGTGCTGAGACCGATAACGCATTTTGTAAAc < 1:235061/251‑1 (MQ=255) cATGCAAGGATCGGAAATCGCATCCAGTGCACGAGCGACCAAAAACATGGTTCCGACAAAACCGGCAGGACTGCCAAAAATATCGGTATAAAAAAACATCATATATAACATTACGTTATCGAAAATAATGTGGCTGGCGGCGTCTCCCATGCCATAACCAATTTTCTCTTTAACGGaca > 1:69783/1‑179 (MQ=255) aCCAAAAACATGGTTCCGACAAAACCGGCAGGAATGCCAAAAATATCGGTATAAAAAAACATCATATATAACATTACGTTATCGAAAATAATGTGGCTGGCGGCGTCTCCCATGCCATAACCAATTTTCTCTTTAACGGACAACACTTCACTCTTCATCGGCTTTTCCTTGATGCTATAGGGGTGCTGAGACCGATAACGCATTTTGTAAACCATCCCTGTGAGAGCGAATATTCCGATATCTg < 1:423670/244‑1 (MQ=255) cAAAAACATGGTTCCGACAAAACCTGCAGGAATGCCAAAAATATCGGTATAAAAAAACATCATATATAACATTACGGTATCGAAAATAATGTGGCTGGCGTCGTCTGCCATg < 1:368733/112‑1 (MQ=255) cAAAAACATGGGTCCGACAAAACCGGCAGGAATGCCAAAAATATCGGTATAAAAAAACATCATATATAACATTACGTTATCGa < 1:398860/83‑1 (MQ=255) aaaaaCATGGTTCCGACAAAACCNGCAGGAATGCNAAANNTATCNGNANAAAAAAACATCATATATAACATTACGTTANCGAAAATAAGGTGGCTGGCGGCGNNTCNNNTGNNATAAc < 2:328417/118‑1 (MQ=255) ttCCGANNAAACCGGCAGGAATGCCAAAAATATCGGTATAAAAAAACATCATATATAACATTACGTTATCGAAAATAATGTGGCTGGCGGCGtctc < 2:31773/96‑1 (MQ=255) tCCGACAAAACCGGCATGAATGCCAAAAAGATCGGTATAAAAAAACATCATATATAACATTACGTTATCGAAAATAATGTGGCTGGCGGCGTCGCCCATGCCATAACCAATTTTCTCTTTAAcn < 1:283089/124‑2 (MQ=255) tCCGACAAAACCGGCAGGAATGCCAAAAATATCGGTATAAAAAAACATCATATATAACATTAAGTTATCGAAAATAATGTGGCTGGCGGAGGCTCCCGTGCCATAAACAAATTTCTCGTTAACgcaatcggcanagc > 2:283089/1‑124 (MQ=255) aaaaCCGGCAGGAATGCCAAAAATATCGGTATAAAAAAACATCATATATAACATTACGTTATCGAAAATAAtgt < 1:384255/74‑1 (MQ=255) ccGGCNGGAATNCNNAAAATATCGGTATAAAAAANCATCATATATAACATNACGTNATCGanaan > 2:169615/1‑64 (MQ=255) ccGGCAGGAATGCCAAAAATATCGGTATAAAAAAACATCATATATAACATTACGTTATCGAAAATAATGTGGCTGGCGGCGTCTcc < 1:169615/86‑1 (MQ=255) gCCAAAAATATCGGTATAAAAAAACATCATATATAACATTACGTTATCGAAAATAATGTGGCTGGCGGCGTCTCCCATGCCATAAc < 1:70282/86‑1 (MQ=255) | CTGCATAGATCATTTTGCCGTTCATACTGAGATCTGGCGTGCTATAGGCCAGTACACAGACGATCCCGAATGGCAGTGCGCCAAACAGTACCCACGGACGAAATTTACCCCAGCGAGAGCGCGTTCGATCGGCCAACAACCCCATGCAAGGATCGGAAATCGCATCCAGTGCACGAGCGACCAAAAACATGGTTCCGACAAAACCGGCAGGAATGCCAAAAATATCGGTATAAAAGAACATCATATATAACATTACGTTATCGAAAATAATGTGGCTGGCGGCGTCTCCCATGCCATAACCAATTTTCTCTTTAACGGACAACACTTCACTCTTCATCTGCTTTTCCTTGATGCTATAGGGGTGCTGAGACCGATAACGCATTTTGTAAACCATCCCTGTGAGAGCGAATATTCCGATATCTG > NC_000913/3835593‑3836015 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |