| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,457,378 | C→T | L334L (CTC→CTT) | gspD → | Type II secretion system protein GspD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,457,378 | 0 | C | T | 100.0% | 22.9 / NA | 9 | L334L (CTC→CTT) | gspD | Type II secretion system protein GspD |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (5/4); total (5/4) | |||||||||||
AGCCTTGATGTCGAAGAGAGCGAGGAAGGAAATACCCGGGTTTATTACCTGAAATATGCTAAAGCC‑ACGAATCTGGTGGAAGTGCTAACCGGTGTTTCCGAAAAGCTGAAAGATGAAAAAGGGAATGCGCGTAAGCCCTCCTCTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGTCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGAGGCAATCATCGTTGAAGTTCAGGATGGAAATGGACTAAACCTCGGCGTGCAATGGGCGAATAAAAACGTTGGCGCACAGCAATTTACCAATACCGGATTACCGATTTTTAACGCTGCGCAAGGTGTGGCTGATTATAAAAAGAATGGTGGGATCACCAGCGCG > NC_000913/3457145‑3457591 | agctttgttGTCGAAGAGAGCGAGGAAGAAAATTCCCGGTTTTATTCCCTGAAATATGC‑AAAGCCCACGAATCGGTTGGAGGGGCTAACCGGTGTTTCCAAAAAGCTGAAAAATAAAAAAGGGAATGCGCGTAAGCCCGCCTCTTCTGGCGCGATGGATAACGTCCCCTTTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGTCCAGGAAAAACTTGCCACGGTAATTGcgcg < 1:4162/243‑1 (MQ=255) ccGGTGTTTCCGAAAAGCTGAAAGATGAAAAAGGGAATGCGCGTAAGCCCTCCTCTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGTCCAGGAAAAACTTGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGAGGCAATCATCGTTGAAGTTCAGGATGGAAATGGACTAAACCTCGGCGTg > 1:402687/1‑245 (MQ=255) caaaaaGCTAAAAGATGAAAAAGGGAATGCGCGAAAGCCCTCCTCTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGTCCAGGAAAAACTTGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTgg < 1:409505/180‑1 (MQ=255) aTAACGTGGCCAGTCCCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGTCCAGGAAAAACTTGCCACGGTAATTGCGCGTCTGGACATTCGCCGTCCTCAGGTGCTGGTTGATGCAATCATCGTTGAAGTTCAGGATGTAAATGGCCGAAACCTAGGCGTGCAAGGGGGGAATCAATACGTTGGTGCACAGCAATGTACCAATGCCGGAGTTCCGATTTTTAACGCTGCGCAAgn < 1:78962/250‑2 (MQ=255) gccgATGAACAGACTAACTCTCTGGGCAGTACCGCTTACCAGTCCGTCCAGGAAAAACTTGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGt < 1:201172/107‑1 (MQ=255) gAACAGAATAACTCTCTGGTAATTACAGCTGACCAGTCCGTCCAGGAAAAACTTGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGAGCTGGTTGAGGCAATCATCGTTGAAGTTCAGGATGGAAATGGACTAAACCTCGGCGTGCAATGGGCGAATAAAAACGTTGGCGCACAGCAATTTACCAATACCGGATTACCGATTTTTAACGCTg > 1:156833/1‑220 (MQ=255) naGGAAAAACTTGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGa > 1:112590/2‑62 (MQ=255) nggAAAAACTTGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGAGGCAATCATCGTTGAAGTTCAGGATGGAAATGGACTAAACCTCGGCGTGCAATGGGCGAATAAAAACGTTGGCGCACAGCAATTTACAAATACCGGATTACCGATTTTTAACGCTGCGCAAGGTGTGGCTGATTATAAAAAGAATGGTGGGATCACCAGcgcg > 1:280382/2‑224 (MQ=255) gAAAAACTTGCAACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGAGGCAATCATCGTTGAAGTTCAGGATGGAAATGGACTAAACCTCGGCGTGCAATGGGCGAATAAAAACg > 1:283984/1‑127 (MQ=255) | AGCCTTGATGTCGAAGAGAGCGAGGAAGGAAATACCCGGGTTTATTACCTGAAATATGCTAAAGCC‑ACGAATCTGGTGGAAGTGCTAACCGGTGTTTCCGAAAAGCTGAAAGATGAAAAAGGGAATGCGCGTAAGCCCTCCTCTTCTGGCGCGATGGATAACGTCGCCATTACCGCCGATGAACAGACTAACTCTCTGGTCATTACCGCTGACCAGTCCGTCCAGGAAAAACTCGCCACGGTAATTGCGCGTCTGGACATTCGCCGTGCACAGGTGCTGGTTGAGGCAATCATCGTTGAAGTTCAGGATGGAAATGGACTAAACCTCGGCGTGCAATGGGCGAATAAAAACGTTGGCGCACAGCAATTTACCAATACCGGATTACCGATTTTTAACGCTGCGCAAGGTGTGGCTGATTATAAAAAGAATGGTGGGATCACCAGCGCG > NC_000913/3457145‑3457591 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |