| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,221,786 | C→T | S107S (AGC→AGT) | ebgR → | DNA‑binding transcriptional repressor EbgR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,221,786 | 0 | C | T | 90.9% | 46.6 / NA | 23 | S107S (AGC→AGT) | ebgR | DNA‑binding transcriptional repressor EbgR |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (10/10); minor base G (0/2); total (11/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.81e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAAAGAAGAGACGAAACATCGCATTCTCGAGATCGCCGAAAAGCTGGAGTACAAGACCAGTAGTGCCCGTAAACTCCAGACAGGTGCAGTCAACCAACACCATATTCTGGCTATCTACAGCTACCAGCAGGAGCTGGAGATCAACGATCCTTACTATCTGGCGATCCGCCACGGCATTGAAACCCAGTGCGAAAAGCTGGGCATCGAGCTCACCAACTGTTATGAACACAGCGGCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCTATATCAACCAGGGCGTTAATCGTATTGGTTTTATTGGC > NC_000913/3221555‑3222008 | gAAAGAAGAGACGAAACATCGCATTCTCGAGATCGCCGAAAAGCTGGAGTACAAGACCAGTAGTGCCCGTAAACTCCAGACAGGTGCAGTCAACCAACACCATATTCTGGCTATCTACAGCTACCAGCAGGAGCTGGAGATCAACGATCCTTACTATCTGGCGATCCGCCACGGCATTGAAACCCAGTGCGAAAAGCTGGGCATCGAGCTCACCAACTGTTATGAACACAGTGGCTTACCAGACATTaaa > 1:101749/1‑250 (MQ=255) gNAACATCGCATTCTCGAGATCGCCGAAAAGCTGGAGTACAAGACCAGTAGTGCCCGTAAACTCCAGACAGGTGCAGTCAACCAACACCATATTCTGGCTATCTACAGCTACCAGCAGGAGCTGGAGATCAACGATCCTTACTATCTGGCGATCCGCCACGGCATTGAAACCCAGTGCGAAAAGCTGGGCATCGAGCTCACCAACTGTTATGAACACAGTGGCTTACCAGACATTAAAAACGTCACCGGt > 1:349941/1‑250 (MQ=255) cAAGACCAGTAGTGCCCGTAAACTCCAGACAGGTGCAATCAACCAACATCATATTCTGGCTATCTACAGCTACCAGCCGGAGCTGGAGCTCAACGCTCCTTACTAACTGGCGATCCGCCACGGCATTGACACCCAGTGCGCCAAGATAGCCATCGAGCTCACCAACTGTTATGAACACAGTGGCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGcgccg > 1:440557/1‑251 (MQ=255) gCCCGTAAACTCCAGACAGGTGCAGTCAACCAACCCCATATTCTGGCTATCTACAGCTACCAGCAGGAGCTGGAGATCAACGATCCTTACTATCTGGCGATCCGCCACGGCATTGAAACCCAGTGCGAAAAGCTGCGCATCGAGCTCACCAACTGTTATGACCACAGTGGCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGtt > 1:395254/1‑251 (MQ=255) gCCCGTAAACTCCAGACAGGTGCAGTCAACCAACACCATATTCTGGCTATCTACAGCTACCAGCAGGCGCTGGAGATCAACGATCCTTACTATCTGGCGATCCGCCACGGCATTGAAACCCAGTGCGAAAAGCTGGGCATCGAGCTCACCAACTGTTATGAACACAGTGGCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGtt > 1:68301/1‑251 (MQ=255) cGTAAACTCCAGACAGGTGCAGTCAACCAACACCATATTCTGGCTATCTACAGCTACCAGCAGGAGCTGGAGATCAACGATCCTTACTATCTGGCGATCCGCCACGGCATTGAAACCCAGTGCGAAAAGCTGGGCATCGAGCTCACCAACTGTTATGAACACAGTGGCTGACCAGACan < 1:132206/179‑2 (MQ=255) aaaCTCCAGACAGGTGCAGTCAACCAACACCATATTCTGGCTATCTACAGCTACCAGCAGGAGCTGGAGATCAACGATCCTTACTATCTGGCGATCCGCCACGGCATTGAAACCCAGTGCGAAAAGCTGGGCATCGAGCTCACCAACTGTTATGAACACAGTGGCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGAccn < 1:79306/250‑2 (MQ=255) cAGTCAACCAACACCATATTCTGGCTATCTACAGCTACCAGCAGGAGCTGGAGATCAACGATCCTTACTATCTGGCGATCCGCCACGGCATTGAAACCCAGTGCGAAAAGCTGGGCATCGAGCTCACCAACTGTTATGAACACAGTGGCTTAcc < 1:61/154‑1 (MQ=255) caaccaacACCATATTCTGGCTATCTACAGCTACCAGCAGGAGCTGGAGATCAACGATCCTTACTATCTGGCGATCCGCCACGGCATTGAAACCCAGTGCGAAAAGCTGGGCATCGAGCTCACCAACTGTTATGAACACATGGGCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGTCAAACCCACGCCCGCCCTGAGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGaat < 1:419609/251‑3 (MQ=255) tcTATCTACAGCTACCAGCAGGAGCTGGAAATCAACGATCCTTACTAGCTGGCGATCCGCCACGGCAGTGAACCCCAGTGCGAAAAGCTGGGCATCGAGCTCACCAACTGTTATGAACACAGGGGCTTACCAGACATTAAAAACGTCCCCGTTATTTTAATTGTCGGCAAACCCCCGCCCGCCCTTCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGa < 1:385671/238‑1 (MQ=255) gCTACCAGCAGGAGCTGGAGATCAACGATCCTTACTATCTGGCGATCCGCCAGGCCATTGAAACGAAGTGCGAAAAGCTGAGCATCGAGCTCACCAAATGTTATGAACACAGAAGCTTACACGACATTACAACCGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCACTGAGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCg > 1:200210/1‑251 (MQ=255) aCCAGCAGGAGCTGGAGATCAACGATCCTTACTATCTGGCGATCCGCCACGGCATTGAAACCCAGTGCGAAAAGCTGGGCATCGAGCTCACCAACTGTTATGAACTCAGTGGCTTTCCAGACATTAAAAACGGCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTGTTAGCGGCTTTCACGAACCCGGCAGCGGTTACGATGCGGTg < 1:392465/251‑1 (MQ=255) gNGATCCGCCAAGGCATTGAAACCCAGTGCGAAAAGCTGGGCATCGAGCTCACCAACTGTTATGAACACAGTGGCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGTCACGCATCAGTAAAGAAATCATCg > 1:346990/1‑250 (MQ=255) ngATCCGCCACGGCATTGAAACCCAGTGCGAAAAGCTGGACATCGAGCTCCCCAACTGTTATGCACACAGTGGCTTACCAGACATTAAAAACGTCACCGGTATTTTACTTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGc > 1:84622/2‑194 (MQ=255) ccACGGCATTGAAACCCAGTGCGAAAAGCTGGGCATCGAGCTCACCAACTGTTATGAACACAGTGGCTTACCCGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGAc > 1:283879/1‑244 (MQ=255) gAAACCCAGTTCAAAAAGCTGGGCATCGAGCTCACCAACTGTTATGAACACAGTGGCTTACCAGACATAAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTgcgcgc < 1:294925/122‑1 (MQ=255) cccAGTGCGAAAAGCTGGGCATCGAGCTCACCAACTGTTATGAACACAGTGGCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGc < 1:343726/187‑1 (MQ=255) gCATCGAGCTCACCAACTNTTATGAACANNGTNGCTTANCNNNCNNNAANAACGTCACCGGTATTTTAANTGNNGGCAAANCCACGCCCGCCCTGCGCGCCGCGGcc < 2:96547/107‑1 (MQ=255) gCATCGAGCTCACCAACTGTTATGAACACAGTGGCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGcc > 1:96547/1‑107 (MQ=255) cATCGAGCTCACCAACTGTTATGAACACAGTGGCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATc < 1:34301/178‑1 (MQ=255) cGAGCTCACCAACTGTTAGGAACACAGTGGCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCTGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACTATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAATAAATCATCGACGTCTATATCATCCAGGGCGTTAATCGTATTGGTTTTATTGGc < 1:325627/250‑1 (MQ=255) cACCAACTGTTATGAACACAGTGGCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCAc < 1:9365/136‑1 (MQ=255) gAACACAGTGGCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCACTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACt > 1:320207/1‑190 (MQ=255) | GAAAGAAGAGACGAAACATCGCATTCTCGAGATCGCCGAAAAGCTGGAGTACAAGACCAGTAGTGCCCGTAAACTCCAGACAGGTGCAGTCAACCAACACCATATTCTGGCTATCTACAGCTACCAGCAGGAGCTGGAGATCAACGATCCTTACTATCTGGCGATCCGCCACGGCATTGAAACCCAGTGCGAAAAGCTGGGCATCGAGCTCACCAACTGTTATGAACACAGCGGCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCTATATCAACCAGGGCGTTAATCGTATTGGTTTTATTGGC > NC_000913/3221555‑3222008 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |