| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 300,645 | G→A | A97V (GCC→GTC) | paoC ← | aldehyde dehydrogenase: molybdenum cofactor‑binding subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 300,645 | 0 | G | A | 83.3% | 21.1 / ‑3.1 | 12 | A97V (GCC→GTC) | paoC | aldehyde dehydrogenase: molybdenum cofactor‑binding subunit |
| Reads supporting (aligned to +/- strand): ref base G (0/2); new base A (2/8); total (2/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCACCGCAGCGGAGGTGAAAGCCCCGTCAAAGTCACCGACGTTTTTGTCGGGCGTGTCTTCCGGCGGCTGATTGACGGCCTGTTTTTCGTCCGCCAGGGAGTAAGCTCCTTTATTACGGCGATAGTGTGCCTGCACCAGCGAGGCCGCCGCTCGCGCCTGTTCGAAGGTCTCGGCCACTACCAGCGCAATGGCCTGATGATAGTGCTCAATAGTGGGGCCGCCTAACAGCCTGGCGGTGTTTTTGTCGCCTTTGCCGAGTGCCCCGGCGTTACTGGCGGTAATGACAGCCAGTACGCCCGGCGCTTTTTGCGCGGCGTCCGTATCAAGGGCGGTGAGGCGTCCTTTGGCAATGG‑CGGAACCGACGATATAGCCATAGGCGGCGTTGGGGGCTTCTTCA‑TGCCATTCGTAGGCGTAGCGTGCCGTGCCGGTAGTTTTCAGCGGTCCGTCGATGCGGTCATGGGGACGACCG > NC_000913/300412‑300881 | tCACCGCAGCGGAGGTGAAAGCCCCGTCAAAGTCACCGACGTTTTTGTCGGGCGTGTCTTCCGGCGGCTGATTGACGGCCTGTTTTTCGTCCGCCAGGGAGTAAGCTCCTTTATTACGGCGATAGTGTGCCTGCACCAGCGAGGCCGCCGCTCGCGCCTGTTCGAAGGTCTCGACCACTACCAGCGCAATGGCCTGATGATAGTGCTCAATAGTGGGGCCGCCTAACAGCCTGACGGTGTTTTTGTCg < 1:343721/248‑1 (MQ=255) gAAAGCCCCGTCAAAGTCACCGACGTTTTTGTCGGGCGTGTCTTCCGGCGGCTGATTGACGGCCTGTTTTTCGTCCGCCAGGGAGTAAGCTCCTTTATTACGGCGATAGTGTGCCTGCACCAGCGAGGCCGCCGCTCGCGCCTGTTCGAAGGTCTCGGCCACTACCAGCGCAATGGCCTGATGATAGTGCTCAATAGTGGGGCCGCCTAACAGCCTGGCgn < 1:107704/221‑2 (MQ=255) aGCTCCTTTATTACGGCGATAGGGTGCCTGCACCAGCGAGGCCGCCGCTCGCGCCTGTTCGAAGGTCTCGACCACTACCAGCGCAATGGCCTGATGATAGTGCTCAATAGTGGGGCCGCCGAACAGCCTGACGGTGTTTTTGTGGCCTTTGCCGAGTGCCCCGTCGGTACTGGCGGTAATGACAGCCAGGACGGCCGGCGGTTTTTGCGCGGCGTCCGTATCAAGGGCGGTGAGGCGTCCTTTGGCAATgg < 1:400573/251‑1 (MQ=255) ccTTTATTACGGCGATAGTGTGCCTGCACCAGCGAGGCCGCCGCTCGCGCCTGTTCGAAGGTCTCGACCACTACCAGCGCAATGGCCTGATGATAGTGCTCAATAGTGGGGCCGCCTAACAGCCTGACGGTGTTTTTGTCGCCTTTGCCGAGTGCCCCGGCGTTACTGGCGGTAATGACAGCCAGTACGCCCGGCGCTTTTTGCGCGGCGTCCGTATCAAGGGCGGTGAGGCGTCCTTTGGCAATGG‑Cg < 1:5631/249‑1 (MQ=255) gtgtGCCTGCACCAGCGAGGCCGCCGCTCGCGCCTGTTCGAAGGTCTCGACCACTACCAGCGCACTGGCCTGATGATAGTGCTCAATAGTGGGGCCGCCTAACAGCCTGACGGTGTTTTTGTCGCCTTTGCCGAGTGCCCCGGCGTTACTGGCGGTAAAGACAGCCCGTACACCCCGCGCTTTTTTCGCGGCGGCCGTATCCACGGCGGTGTGGCGTCCTTTGGCAATGG‑CGGAACCGACGGTATTGccct > 1:222140/1‑249 (MQ=255) tGNTCGNANNTNNCGCNCACTACCAGCGCAATGGCCTGNNGATAGTGCTNAATAGTGGGGCCGCCTAACAGCCTGACGGTGTTTTTGTCGCCTTTGCCGAGTGNCCCGGCGTTNNTGNCGGTANTNNNANNNAGNACGCCCGGCGCTTTTTGCGNGGNNTCCGTANCAAGGGCGGTGAGGCGTCCTTTGGCa < 2:96526/192‑1 (MQ=255) ggtcgcgaccACTACCAGCTCAATGGCCTGATGATAGTGCTCAATAGTGGGGCCGCCTAACAGCCTGACGGTGTTTTTGTc < 1:201014/73‑1 (MQ=255) aCTACCAGCGCAATGGCCTGATGATAGTGCTCAATAGTGGGGCCGCCTAACAGCCTGACGGTGTTTTTGTCGCCTTTGCCGAGTGCCCCGGCGTTACTGGCGGTAATGACAGCCAGTACGCCCGGCGCTTTTTGCGCGGCGTCCGTATCAAGGGCGGTGAGGCGTCCTTTGGCAATGG‑CGGAACCGACGATATAGCCATAGGCGGCGTTGGGGGCTTCTTCA‑TGCCATTCGTAGGCGTAGCgtgccgtgcc < 1:379286/251‑1 (MQ=255) gatAGTGCTCAATAGTGGGGCCGCCTAACAGCCTGGCGGTGTTTTTGTCGCCTTTGCCGAGTGCCCCGGCGTTACTGGCGGTAATGACAGCCAGTACGCCCGGCGCTTTTTGCGCGGCGTCCGTATCAAGGGCGGTGAGGCGTCCTTTGGCAATGG‑CGGAACCGACGATATAGCCATAGGCGGCGTTGGGGGCTTCTTCA‑TGCCATTCGTAGGCGTAGCGTGCCGTGCCGGTAGTTTTCAGCGGTCCGtn < 1:278104/250‑2 (MQ=255) cAATAGTGGGGCCGCCTAACAGCCTGACGGTGTTTTTGTCGCCTTTGCCGAGTGCCCCGGCGTTACTGGCGGTAATGACAGCCAGTACGCCCGGCGCTTTTTGCGCGGCGTCCGTATCAAGGGCGGTGAgg < 1:302761/131‑1 (MQ=255) cgccTAACAGCCTGACGGTGTTTTTGTCGCCTTTGCCGAGTGCCCCGGCGTTACTGGCGGTAATGGCAGCCATGACGGCCGGCGCTTTTTGTGCGGCGTCCGCATCCAGGGCGGTGAGGCGGCCTTTTGGACTGGACGAAACGCAC‑CTATAGACCTAGGCGGCGGTGGGGGGTTCTTCAATACC‑TTCGTAAGCGTAGCGGGCCGTTCCGGGAGTTTTTATCGGTCCGTCgcgtggggcatgggggcgaccc > 1:223785/1‑230 (MQ=255) gCCTGACGGTGTTTTTGTCGCCTTTGCCGAGTGCCCCGGCGTTACTGGCGGTAATGACAGCCAGTACGCCCGGCGCGTTTTGCGCGGCGTCCGTATCAAGGGCGGTGAGGCGTCCTTTGGCAATgn < 1:47449/126‑2 (MQ=255) | TCACCGCAGCGGAGGTGAAAGCCCCGTCAAAGTCACCGACGTTTTTGTCGGGCGTGTCTTCCGGCGGCTGATTGACGGCCTGTTTTTCGTCCGCCAGGGAGTAAGCTCCTTTATTACGGCGATAGTGTGCCTGCACCAGCGAGGCCGCCGCTCGCGCCTGTTCGAAGGTCTCGGCCACTACCAGCGCAATGGCCTGATGATAGTGCTCAATAGTGGGGCCGCCTAACAGCCTGGCGGTGTTTTTGTCGCCTTTGCCGAGTGCCCCGGCGTTACTGGCGGTAATGACAGCCAGTACGCCCGGCGCTTTTTGCGCGGCGTCCGTATCAAGGGCGGTGAGGCGTCCTTTGGCAATGG‑CGGAACCGACGATATAGCCATAGGCGGCGTTGGGGGCTTCTTCA‑TGCCATTCGTAGGCGTAGCGTGCCGTGCCGGTAGTTTTCAGCGGTCCGTCGATGCGGTCATGGGGACGACCG > NC_000913/300412‑300881 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |