| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,175,234 | C→T | V55M (GTG→ATG) | parE ← | DNA topoisomerase IV subunit B |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,175,234 | 0 | C | T | 88.9% | 45.2 / ‑5.8 | 18 | V55M (GTG→ATG) | parE | DNA topoisomerase IV subunit B |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (14/2); minor base G (0/2); total (14/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.92e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CACGTTAACTTCTACGCGCTTCGACAGGGCGTTAACCACCGAAATCCCCACGCCATGCAGGCCGCCAGAGAACTGGTAATTTTTGTTAGAGAATTTACCGCCTGCATGCAGACGGCAAAGAATCAGTTCAACCGCCGGTACACCCTCTTCCGGGTGAATATCCACCGGCATCCCGCGCCCATCGTCAATAACTTCTAACGACTGGTCAGCATGTAAAATAACGTCCACGCGTTTTGCGTGACCCGCCAGTGCTTCATCCACACTGTTATCAATGACTTCTTGCCCCAAATGGTTAGGGCGAGTGGTATCGGTATACATCCCCGGACGGCGGCGAACCGGCTCAAGCCCGGTGAGTACCTCAATGGCATCAGCGTTATAAGTTTGCGTCATGGTTTAAGTTAGTAATTCGAGTTGATCGTCAGAGATGGTGC > NC_000913/3175007‑3175437 | cACGTTAACTTCTACGCGCTTCGACAGGGCGTTAACCACCGAAATCCCCACGCCATGCAGGCCGCCAGAGAACTGGTAATTTTTGTTAGAGAATTTACCGCCTGCATGCAGAAGGCAAAGAATCAGTTCAACCGCCGGTACACCCTCTTCCGGGTGAATATCCACCGGCATCCCGCGCCCATCGTCAATAACTTCTAACGACTGGTCAGCATGTAAAATAACGTCCATGCGTTTTGCGTGACCCGCCAGTg > 1:71165/1‑251 (MQ=255) cTTCGACAGGGAGTTAACCACCGAACTCCCCACGCCCTGCAGGCCGCCAGAGAACTGGAAATTTTTGTTAGAGAATTTACCGCCTGCATGCAGACGGAAAAGAATCAGTTCAACCGCCGGTACACCCTCATCCGGGTGAATATCCACCGGCATCTCGCGCCCATCGTCAATAACTTCTAACGACTGGTCAGCATGTAAAATAACGTCCATGCGTTTTGCGTGAc > 1:345764/1‑224 (MQ=255) cgccAGAGAACTGGTAATTTTTGTTAGAGAATTTACCGCCTGCATGCAGACGGCAAAGAATCCGTTCAACCGCCGGTACACCCTCTTCCGGGTGAATATCCACCGGCATCCCGCGCCCATCGTCAATAACTTCTAACGACTGGTCAGCATGTAAAATAACGTCCATGCGTTTTGCGTGACCCGCCAGTGCTTCATCCACACTGTTATCAATGAc > 1:324064/1‑214 (MQ=255) catgcaGACGACAAAGAATCAGTTCAACAGCCGGTACACCCTCTTCCGGGTGAATATCCACCGGCATCCCGCGCACATCGTCCATAACTTCTAACGACTGGTCAGCATGTAAAATAACGTCCATGCGTTTTGCGTGACCCGCCAGTGCTTCATCCACACTGTTATCAATGACTTCTTGCCCCAAATGGTTAGGGCGCGTGGTATCGGTATACATCCCCGGCCGGCGGCGAACCGGCTCAAGCCCGGTg > 1:370983/1‑248 (MQ=255) naGTTCAACCGCCGGTACACCCTCTTCCGGGTGAATATCCACCGGCATCCCGCGCCCATCGTCAATAACTTCTAACGACTGGTCAGCATGTAAAATAACGTCCATGCGTTTTGCGTGACCCGCCAGTGCTTCATCCACACTGTTATCAATGACTTCTTGCCCCAAATGGTTAGGGCGAGTGGTATCGGTATACATCCCCGGACGGCGGCGAACCGGCt > 1:271419/2‑218 (MQ=255) ngTACACCCTCTTCCGGGTGAATATCCACCGGCATCCCGCGCCCATCGTCAATAACTTCTAACGACTGGTCAGCATGTAAAATAACGTCCATGCGTTTTGCGTg > 1:358635/2‑104 (MQ=255) cacCCTCTTCCGGGTGAATATCCACCGGCATCCCGCGCCCATCGTCAATAACTTCTAACGACTGGTCAGCCTGTCAAATAACGTCCATGCGTTTTGCGTGACCCGCCAGTGCTTCATCCACACTGTTATCAATGAct > 1:211928/1‑137 (MQ=255) cacCCTCTTCCGGGTGAATATCCACCGGCATACCGCGCCCATCGTCAATAACTTCTAACGAATGGTTAGCCTGTAAAATAACGTCCATGCGTTTTGCGTg > 1:173344/1‑100 (MQ=255) gTGAATATCCACCGGCATCCCGCGCCCATCGTCAATAACTTCTAACGACTGGTCAGCATGTAAAATAACGTCCATGCGTTTTGCGTGACCCGCCAGTGCTTCATCCACACTGTTATCAATGACTTCTTGCCCCAAATGGTTAGGGCGAGTGGTATCGGTATACATCCCCGGACGGCGGCGAACCGGCTCAAGCCCGGTGAGTACCTCAATGGCATCAGCGTTATAAg > 1:16955/1‑227 (MQ=255) ccACCGGCACCCCGCGCCCATCGACAAAAACTTCAAACGACTGGTCAAAATGAAAAATAACGGCAAGGGGTTTTTCGGGACCCGCCAGGGCTTCAGCCACACTGTTATCAATGACTTCTGGCCCCAAATGGTTAGGGCGAGTGGTATCGGTATACATCCCCGGACGGCGGCGAAcc < 1:139053/176‑1 (MQ=255) ngngcNCATCGNCAATNACTTCTAACGACTGGNCAGCATGTCAAATAACGTCNNTNAGTTTNGCGTg < 2:173344/66‑1 (MQ=255) cccATCGTCAATAACTTCTAACGACTGGTCAGCATGTAAAATAACGTCCATGCGTTTTGCGTGACCCGCCAGTGCTTCATCCACACTGTTATCAATGACTTCTTGCCCCAAATGGTTAGGGCGAGTGGTATCGGTATACATCCCCGGACGGCGGCGAACCGGCTCAAGCCCGGTGAGTACCTCAATGGCATCAGCGTTATAAGTTTGCGTCATGGTTTAAGTTAGTAATTCGAGTTGATCGTCAGAGATgg > 1:222889/1‑251 (MQ=255) ccATCGTCAATATCTGCTACCGACTGGTAATCATATAAAATACCGTCCTTGCTTTTTGCGTGACCCGCCAGTGCTTCATCCACACTGTTATCAATGACTTCTTGCCCCAAATGGTTAGGGCGAGTGGTATCGGTATACATCCCCGGACGGCGGCGAACCGGCTCAAGCCCGGTGAGTACCTCAATGGCATCAGCGTTATAAGTTGGCGTCATGGTTTAAGTTAGTAATTCGAGTTGATCGTCAGAGATGGt < 1:26405/251‑1 (MQ=255) ccATCGTCAATAACTTCTAACGACTGGTCAGCGTGTAACATAACGTCCATGCGTTTTGCGTGACCCg > 1:153754/1‑67 (MQ=255) gTCAATAACTTCTAACGACTGGTCAGCATGTAAAATAACGTCCATGCGTTTTGCGTGCCCCGCCAGTGCTTCATCCACACTGTTATCAATGACTTCTTGCCCCAAATGGTTAGGGTGAGTGGTATCGGTATACATCCCCGGACGGCGGCGAACCGGCTCAAGCCCGGTGAGTACCTCAATGGCACCAGCGTTATAAGTTTGCGTCATGGTTTAAGTTAGTAATTCGAGTTGATCGTCAGAGATGGTGc > 1:287666/1‑248 (MQ=255) nnccNNNNNGTCNGAATTTAAAAAAACGGCCAGGCTTTTGGCTTGACCCGCCAGTGCTTCATCCACACTGTTATCAATGACTTCTTGCCCCAAATGGTTAGGGCGAGTGGTATCGGTATACATCCCCGGACGGCGGCGAACCGGCt < 2:271419/143‑1 (MQ=255) gACTGGTCAGCATGTAAAATAACGTCCATGCGTTTTGCGTGACCCGCCAGTGCTTCATCCACACTGTTATCAATg > 1:370937/1‑75 (MQ=255) ggTCANCATGANANNTAACGTCCATGCGTTTTGCNTGACCCGCCAGTGCTNCATCNACACTNtgntn > 2:186807/1‑63 (MQ=255) | CACGTTAACTTCTACGCGCTTCGACAGGGCGTTAACCACCGAAATCCCCACGCCATGCAGGCCGCCAGAGAACTGGTAATTTTTGTTAGAGAATTTACCGCCTGCATGCAGACGGCAAAGAATCAGTTCAACCGCCGGTACACCCTCTTCCGGGTGAATATCCACCGGCATCCCGCGCCCATCGTCAATAACTTCTAACGACTGGTCAGCATGTAAAATAACGTCCACGCGTTTTGCGTGACCCGCCAGTGCTTCATCCACACTGTTATCAATGACTTCTTGCCCCAAATGGTTAGGGCGAGTGGTATCGGTATACATCCCCGGACGGCGGCGAACCGGCTCAAGCCCGGTGAGTACCTCAATGGCATCAGCGTTATAAGTTTGCGTCATGGTTTAAGTTAGTAATTCGAGTTGATCGTCAGAGATGGTGC > NC_000913/3175007‑3175437 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |