| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,127,435 | G→T | S196* (TCG→TAG) | glcD ← | glycolate dehydrogenase, putative FAD‑linked subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,127,435 | 0 | G | T | 94.4% | 47.2 / ‑5.9 | 18 | S196* (TCG→TAG) | glcD | glycolate dehydrogenase, putative FAD‑linked subunit |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base T (10/7); total (10/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.44e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.74e-01 | |||||||||||
ACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGTCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGTTTTACCGTCACTTCGGTGGTCACGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGTTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGATTTGTGAGGAAGGGTCCGGTGCGTAGTAGAGATTATGCGGTGCAACGGCCTGGGAGATCGCCAGGTTACGCACGCCTGGCTGCACGCGC > NC_000913/3127211‑3127656 | aCAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGGCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGTTTTACCGTCACTTCGGTGGTCACGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCTATCCAAGCGTCAGTGCCTCGCCGTcc < 1:127731/251‑1 (MQ=255) ncatcatCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGCTGTCACCAACCGCAAGTCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGTTTTACCGTCACTTCGGTGGTCACGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCTATCCAAGCGTCAGTGCCTCGCCGTCCAGCGTTTGc > 1:45942/2‑251 (MQ=255) ggATAATGCCATTGGCGATGATGTCACCAACCGCAAGTCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGTTTTACCGTCACTTCGGTGGTCACGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCTATCCAAGCGTCAGTGcc < 1:399748/212‑1 (MQ=255) gTCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGTTTTACCGTCACTTCGGTGGTCACGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCTATCCAAGCGTCAGTGCCTCGCCGTCCAGCGTTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCATGCAGTGGAcgccg < 1:135073/251‑1 (MQ=255) cTTTTTCTACCGAGTCAAAGCTGGCTAACAGCACCCGCGCCACGGGCGGCTTCGGCAGCAGTTTTACCGTCACTTCGGTGGTCACGCCGCGCATACCTTCCGATCCCGTGAACAGCGCCCGCAGGTCAAAACCCGGTGAATCCAGCGCGTCCTATCCAAGCGTCAGCGCCTCGCCGTCCAGCGCTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGc > 1:182624/1‑250 (MQ=255) gAACCCGCGCCACGGGCGGCTTCGGCAGCAGTTTTACCGTCACTTCGGTGGTCACGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCTATCCAAGCGTCAGTGCCTCGCCGTCCAGCGTTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAAc > 1:139773/1‑249 (MQ=255) aCCCGCTCCACGAGCGGCGTCGGCAGCAGTTTGACCGTCACTTCGGTGGTCACGCCTACCATACCTGCCGAACCGGGGAACAGCGCCACCAGGTCAAAACCAGGTGACTCCAGCGCGTCCTATCCAAGCGTCAGTGCCTCGCCGTcc < 1:309314/147‑1 (MQ=255) aCCCGCGCNANNNGNNGCTTCGGCAGCAGTTTTACCGTCACTTCGGTGGTCACGCCGAGCNTACCTTCCGATCCGGNGANCAGCNCCANCAGGTCAAAACCAGGTGAATCCAGCGCGTCCTATCCAAGCGTCAGTGCCTCGCCGTcc > 2:309314/1‑147 (MQ=255) cgcgCCACGGGCGGCTTCGGCAGCAGTTTTACCGTCACTTCGGTGGTCACGCCGAGCCTACCTTCAGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCTATCCAAGCGTCAGTGCCTCGCCGTCCAGCGTTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGAt > 1:252573/1‑251 (MQ=255) cGGGCGGCTTCGGCAGCAGTTTTACCGTCACTTCGGTGGTCACGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCTATCCAAGCGTCAGTGCCTCGCCNTccnn > 2:271428/1‑137 (MQ=255) cGGGCGGCTTCGGCAGCAGTTTTACCGTCACTTCGGTGGTCACGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCTATCCAAGCGTCAGTGCCTCGCCGTCCan < 1:271428/139‑2 (MQ=255) gcTTCGGCAGCAGTTTTACCGTCACTTCGGTGGTCACGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCTATCCAAGCGTCAGTGCCTCGCCGTCCAGCGTTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGATTTGTGAGGAAggg > 1:102283/1‑251 (MQ=255) ngcagcaGTTTTACCGTCACTTCGGTGGTCACGCCGAGTATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCTATCCAAGCGTCAGTGCCTCGCCGTCCAGCGTTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGATTTGTGAGGAAGGGTCCgg > 1:114345/2‑251 (MQ=255) gCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGTTTGCACTTCAATTTGCAGCAGGTTATGTACGGTCAGACCATATTTCAGTCAGTTGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGATTTGTGAGGAAggg < 1:427620/209‑1 (MQ=255) cTTCCGATCCGGTGAACAGCGCCATCAGGTCAAAACCAGGTGAATCCAGCGCGTCCTATCCAAGCTTCAGTGCCTCGCCGTCCAGCGTTTGCACTTCAAtt < 1:376008/101‑1 (MQ=255) tgccAAAACCAGGTGAATCCAGCGCGGCCTAGCCAAGCGTCAGTGCCTCGCCGTcc < 1:141508/53‑1 (MQ=255) ggTCAAAACCAGGTGAATCCAGCGCGTCCTATCCAAGCGTCAGTGCCTCGCCGTCAAGCGTTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGATTTGTGAGGAAGGGTCCGGTGCGTAGTAGAGATTATGCGGTGCAACGGCCTGGGAGATCGCCAGGTTACGCACGCCTGGCTGCAcgcgc > 1:295957/1‑251 (MQ=255) gTCAAAACCAGGTGAATCCAGCGCGTCCTATCCAAGCGTCAGTGCCTCGCCGTCCAGGGTTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACAATCTTTCAGGCCGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCCATGGAACAGGCGATTTGTGAGGAAGGGTCCGGTGCGTAGTAGAGATTATGCGGTGCAACGGCCTGGGAGATCGCCAg > 1:334156/1‑225 (MQ=255) | ACAGGTTATCCATCATCTCCAGCCCGCCGGGGATAATGCCATTGGCGATGATGTCACCAACCGCAAGTCCGGCTTTTTCTACCGAGTCAAAGCTGGCTAACAGAACCCGCGCCACGGGCGGCTTCGGCAGCAGTTTTACCGTCACTTCGGTGGTCACGCCGAGCATACCTTCCGATCCGGTGAACAGCGCCAGCAGGTCAAAACCAGGTGAATCCAGCGCGTCCGATCCAAGCGTCAGTGCCTCGCCGTCCAGCGTTTGCACTTCAATTTTCAGCAGGTTATGTACGGTCAGACCATATTTCAGGCAGTGGACGCCGCCGGCATTTTCAGCCACATTGCCGCCAATGGAACAGGCGATTTGTGAGGAAGGGTCCGGTGCGTAGTAGAGATTATGCGGTGCAACGGCCTGGGAGATCGCCAGGTTACGCACGCCTGGCTGCACGCGC > NC_000913/3127211‑3127656 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |