| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,010,122 | G→A | G32D (GGC→GAC) | hyuA → | phenylhydantoinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,010,122 | 0 | G | A | 91.7% | 64.5 / NA | 24 | G32D (GGC→GAC) | hyuA | phenylhydantoinase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (9/13); minor base C (2/0); total (11/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.99e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAAAAAACCTGGAAATCTCACCTGGTGACCTGTGCCGCGATGTACGCTGCAATCCCGTTAAGCTGGCTGGCAACAGAGTAATTACTCTTCACTTATTCCCCTCCGGTTCGCCGGAGGGTTTTTGGAGTTTGCTATGCGCGTATTGATCAAAAACGGCACTGTCGTTAACGCAGATGGACAAGCCAAACAGGATTTGCTGATTGAAAGCGGGATTGTTCGCCAGTTGGGCAACAATATTTCGCCGCAGCTCCCGTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCATCGCGCGCAGTTGTGATGATTTTTTTACCGGTACCCGCGCAGCTGCGTGTGGCGGTACAACAACCATTATTGACCATATGGGATTTGGCCCAAACGG > NC_000913/3009895‑3010326 | gAAAAAACCTGGAAATCTCACCTGGTGACCTGTGCCGCGATGTACGCTGCAATCCCGTTAAGCTGGCTGGCAACAGAGTAATTACTCTTCACTTATTCCCCTCCGGTTCGCCGGAGGGTTTTTGGAGTTTGCTATGCGCGTATTGATCAAAAACGGCACTGTCGTTAACGCAGATGGACAAGCCAAACAGGATTTGCTGATTGAAAGCGGGATTGTTCGCCAGTTGGACAACAATATTTCGCCGCAGCTnc < 1:347157/251‑1 (MQ=255) ggAAATCTCACCTGGTGACCTGTACCGCGATGTACGCTGAACTCCCGTTAAGCTGCCTGACAAAAGACAAATTACTCTTCACTTCTTCCCCTGCGATTCACCGGATGGCTTTTGGAGCTTGCTATCCGCGTATTGATCAAAAAAGACATTGTCGTTAACGCAGATGGACAAGCAAAACAGGAGTTGCTGATTGAAAGCGGGATTGTTCGCCAGTTGGCCAACAATATTTCTCCGCAGCTCCCGTATga > 1:434336/1‑248 (MQ=255) ccTGGTGACCTGTGCCGCGATGTACGCTGCAATCCCGTTAAGCTGGCTGGCAACCGAGTCATTACTCTTCAATTATTCCCCTCCGGTTCGCCGGAGGGTTTTTGGAGTTTGATATGCGCGTATTGATCAAAAACGGCACTGTCGTTAACGCAGATGGACACGCCAAACAGGATTTGCTGATTGAAAGCGGGATTGTTCGCCAGTTGGACAACAATATTTCGCCGCAGCTCCCGTATGAAGAAATTGATGcc > 1:314413/1‑251 (MQ=255) ccTGTGCCGCGATGTACGCTGCAATCCCGTTAAGCTGGCTGGCAACAGAGTAATTACTCTTCACGTATTCCCCTCCGGTTCGCCGGAGGGTTTTTGGAGTTTGCTATGCGCGTATTGATCAAAAACGGCACTGTCGTTAACGCAGATGGACAAGCCAAACAGGATTTGCTGATTGAAAGCGGGAGTGTTCGCCAGTTGGACAACAATATTTCGCCGCAGCTCCCGTATGAAGAAATTGATGCCACTGGCtn < 1:129440/251‑2 (MQ=255) aCGCTGCAATCCCGTTAAGCTGGCTGGCAACAGAGTAATTACTCTTCACTTATTCCCCTCCGGTTCGCCGGAGGGTTTTTGGAGTTTGCTATGCGCGTATTGATCAAAAACGGCACTGTCGTTAACGCAGATGGACAAGCCAAACAGGATTTGCTGATTGAAAGCGGGATTGTTCGCCAGTTGTACAACAATATTTCGCCGCAGCTCCCGTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTCCCTgg < 1:335478/251‑1 (MQ=255) gTTAAGCTGGCTGGCAACAGAGTAATTACTCTTCACTTATTCCCCTCCGGTTCGCCGGAGGGTTTTTGGAGTTTGCTATGCGCGTATTGATCAAAAACGGCACTGTCGTTAACGCAGATGGACAAGCCAAACAGGATTTGCTGATTGAAAGCGGGATTGTTCGCCAGTTGGACAACAATATTTCGCCGCAGCTCCCGTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTc < 1:238507/251‑1 (MQ=255) ggctggcAACAGAGGAATTACTCTTCACTTATTCCCCCCCGGTTCGCCGGAGGGTTTTTGGAGTTTGCTATGCGCGTATTGATCAAAAACGGCACTGTCGGTAACGCAGATGGACAAGCCAACCAGCATTTGCTGATTGAAAGCGGGATTGTTCGCCAGTTGGACAACAATATTGCGCCGCAGCTCCCGTATGAAGAAATTGATGCCACTGGCTGTTACGATTTCCCTGGCGGCGTGGATGTCCATACGc < 1:262706/250‑1 (MQ=255) ctctTCACTTATTCCCCTCCGGTTCGCCGGAGGGTTTTTGGAGTTTGCTATGCGCGTATTGATCAAAAACGGCACTGTCGTTAACGCAGATGGACAAGCCAAACAGGATTTGCTGATTGAAAGCGGGAGTGTTCGCCAGTTGGATAACAATATTTcgcc < 1:124954/159‑1 (MQ=255) ggAGTTTGCTATGCGCGTATTGATCAAAAACGGCACTGTCGTTAACGCAGATGGACAAGCCAAACAGGATTTGCTGATTGAAAGCGGGATTGTTCGCCAGTTGGACAACAATATTTCGCCGCAGCTCCCGTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCATCGCGCGCAGTTGTGATGATTTTTTTACCGGTACCcgcg > 1:177851/1‑251 (MQ=255) gcgcGTATTGATCAAAAACGGCACTGTCGTTAACGCAGATGGACAAGCCAAACAGGATTTGCTGATTGAAAGCGGGATTGTTCGCCAGTTGGACAACAATATTTCGCCGCAGCTCCCGTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCATCGCGCGCAGTTGTGATGATTTTTTTACCGGTACCCGCGCAGCTGCGtgtg < 1:2814/251‑1 (MQ=255) aaaaaCGGCACTGTCGTAAACGCAGATGGGCAAGCCAAACAGGATTTGCCGATTGAAAGCGGGATTGTTCGCCAGTTGGACAACAATATTTCGCCGCAGCTCCCGTATGAAGAAATTGATGCCACTGGCTGTTACGGTTTACCTTGCGGCGTGGATGTCCATACGCCATTCAATATTGATGTCGGCATCGCGCGGAGTTGTGATGATTTTTTTACCGGTAACCGCGCAGCTGCGTGGGGCGGTAcaacaa > 1:227943/1‑250 (MQ=255) cACTGTCGTTAACGCAGATGGACAAGCCCAACAGGATTTGCTGATTGAAAGCGGCATTGACCGCCAGTTGGACAACAATATTTCGCCGCACCTCCCCTATGAAGAAATTGATGCAACTGGCTATTAAGTTTTTCCTGGCAGCGTGGATGTCCATACGCATTTCAATATTTATGTCGGCATCGCGCGCAGTTGTGATGAtttt > 1:68461/1‑202 (MQ=255) aCTGTCGTTAACGCAGATGGACAAGCCAAACAGGATTTGCTGATTGAAAGCGGGATTGTTCGCCAGTTGGACAACACTATTTcgccgc > 2:31018/1‑88 (MQ=255) aCTGTCGTTAACGCAGATGGACAAGCCAAACAGGATTTGCTGATTGAAAGCGGGATTGTTCGCCAGTTGGACAACAATATTTcgccgc < 1:31018/88‑1 (MQ=255) gTTAACGCAGATGGACAAGCCAAACAGGATTTGCTGATTGAAAGCGGGATGGTTCGCCAGTTGGACAACAATATTTCGCCGCAGCTCCCGTATGAAGAAATTGATGCCACTGGCtn < 1:78738/116‑2 (MQ=255) cGCAGATGGACAAGCCAAACAGGATTTGCTGATTGAAAGCGGGATTGTTCGCCAGTTGGACAACAATATTTCGCCGCAGCTCCCGTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCAGCGCGCGCAGTtgtg < 1:124368/182‑1 (MQ=255) cAGATGGACAAGCCAAACAGGATTTGCTGATTGAAAGCGGGATTGTTCACCAGTTAGCCAACAATATTTCGCAGCAGCTCCAGCATGAAGAAATTGCTGACACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCATCGCACGCAGTTGTGATGATTTTTTTACAGGTACCCGCGCAGCTGCGTGTGGCGATACAACAACCATTATTGACCATATGGGAttt > 1:300789/1‑251 (MQ=255) gCCAAACAGGATTTGCTGATTGAAAGCGGGATTGTTCGCCAGTTGGACAACAATATTTCGCCGCAGCTCCCGTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCATCGCGCGCAGTTGTGATGATTTTTTTACCGGTACCCGCGCAGCTGCGTGTGGCGGTACAACAACCATTATTGACCATATGGGATTTGGCCCAAACgg > 1:354293/1‑251 (MQ=255) cAGGATTTGCTGATTGCAAGCGGGATTGTTCGCCAGTTGGACAACAATATTTCGCCGCAGCTCCCGTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCATAc > 1:155859/1‑125 (MQ=255) aTTTGCTGATTGAAAGCGGGATTGTTCGCCAGTTGGACAACAATATTTCGCCGCAGCTCCCGTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGAGGTCCATACGCATTTCAATATTGATGTCGGCATCGCGCGCAGTTGTGATGATTTTTTTACCGGTAccc < 1:243869/180‑1 (MQ=255) nttCGCCAGTTGGACAACAATATTTCGCCGCAGCTCCCGTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTccc > 1:267479/2‑77 (MQ=255) gTTCGCCAGTTGGACAACAATATTTCGCCGCAGCTCCCGTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTccc < 2:267479/77‑1 (MQ=255) ttCGCCAGTTGGACAACAATATTTCGCCGCAGCTCCCGTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCATCGCGCGCAGTTGTGATGATTTTTTTACCGGTACCCGCGCAGCTGCGTGTGGCGGTACAACAACCATTATTGACCATATGGGATTTGGc < 1:14551/209‑1 (MQ=255) gCCAGTTGGACAACAATATTTCGCCGCAGCTCCCGTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCAtcc > 1:372995/1‑92 (MQ=255) | GAAAAAACCTGGAAATCTCACCTGGTGACCTGTGCCGCGATGTACGCTGCAATCCCGTTAAGCTGGCTGGCAACAGAGTAATTACTCTTCACTTATTCCCCTCCGGTTCGCCGGAGGGTTTTTGGAGTTTGCTATGCGCGTATTGATCAAAAACGGCACTGTCGTTAACGCAGATGGACAAGCCAAACAGGATTTGCTGATTGAAAGCGGGATTGTTCGCCAGTTGGGCAACAATATTTCGCCGCAGCTCCCGTATGAAGAAATTGATGCCACTGGCTGTTACGTTTTCCCTGGCGGCGTGGATGTCCATACGCATTTCAATATTGATGTCGGCATCGCGCGCAGTTGTGATGATTTTTTTACCGGTACCCGCGCAGCTGCGTGTGGCGGTACAACAACCATTATTGACCATATGGGATTTGGCCCAAACGG > NC_000913/3009895‑3010326 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |