| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 300,585 | G→A | A117V (GCC→GTC) | paoC ← | aldehyde dehydrogenase: molybdenum cofactor‑binding subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 300,585 | 0 | G | A | 90.9% | 21.5 / ‑3.4 | 12 | A117V (GCC→GTC) | paoC | aldehyde dehydrogenase: molybdenum cofactor‑binding subunit |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (3/7); total (3/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.10e-01 | |||||||||||
AGACGGCCATCGAGGCATGCGGCTCCATCGCCATATGGCTCTGGTCCGGGGTCGTGTAGGTAGCATCAATCTTCACCGCAGCGGAGGTGAAAGCCCCGTCAAAGTCACCGACGTTTTTGTCGGGCGTGTCTTCCGGCGGCTGATTGACGGCCTGTTTTTCGTCCGCCAGGGAGTAAGCTCCTTTATTACGGCGATAGTGTGCCTGCACCAGCGAGGCCGCCGCTCGCGCCTGTTCGAAGGTCTCGGCCACTACCAGCGCAATGGCCTGATGATAGTGCTCAATAGTGGGGCCGCCTAACAGCCTGGCGGTGTTTTTGTCGCCTTTGCCGAGTGCCCCGGCGTTACTGGCGGTAATGACAGCCAGTACGCCCGGCGCTTTTTGCGCGGCGTCCGTATCAAGGGCGGTGAGGCGTCCTTTGGCAATGGCGGAACCGACGATATAGCCAT > NC_000913/300340‑300786 | aGACGGCCATCGAGGCATGCGGCTCCATCGCCATATGGCTCTGGTCCGGGGTCGTGTAGGTAGCATCAATCTTCACCGCAGCGGAGGTGAAAGCCCCGTCAAAGTCACCGACGTTTTTGTCGGGCGTGTCTTCCGGCGGCTGATTGACGGCCTGTTTTTCGTCCGCCAGGGAGTAAGCTCCTTTATTACGGCGATAGGGTGCCTGCACCAGCGAGGCCGCCGCTCGCGCCTGTTCGAAGGTCTCGACCACt < 1:253425/251‑1 (MQ=255) ctgCCATCGAGGCATGCGGCTCCATCGACATATGGCTCTGGTCCGGGGTCGTGTAGGTAGCATCAATCTTCCCCGCAGCGGCGGTGAAACCCCCGTCAAAGTCACCGACGTTTTTGTCGGGCGTGTCTTACGGCGGCTGATTGACGGCCTGTTTTTCGTCCGCCAGGGTTTAAGCTCCTTTATTACGGCGATAGCGTGCCTCCGCCAGCGAGTCCGCCGCTCGCGCCTGTTCGAAGGTCTCGACCACTAcc > 1:11429/3‑251 (MQ=255) tCACCGCAGCGGAGGTGAAAGCCCCGTCAAAGTCACCGACGTTTTTGTCGGGCGTGTCTTCCGGCGGCTGATTGACGGCCTGTTTTTCGTCCGCCAGGGAGTAAGCTCCTTTATTACGGCGATAGTGTGCCTGCACCAGCGAGGCCGCCGCTCGCGCCTGTTCGAAGGTCTCGACCACTACCAGCGCAATGGCCTGATGATAGTGCTCAATAGTGGGGCCGCCTAACAGCCTGACGGTGTTTTTGTCg < 1:343721/248‑1 (MQ=255) ggAGGTGAAAGCCCCGTCAAAGTCACCGACGTTTTTGTCGGGCGTGTCTTCCGGCGGCTGATTGTCGGCCTGTTTTTCGTCCGCCAGGGAGTAAGCTCCTTTATTACGGCGATAGTGTGCCTGCACCAGCGAGGCCGCCGCTCGCGCCTGTTCGAAGGTCTCGACCACTACCAGCGCAATGGCCTGATGATAGTGCTCAATAGTGGGGCCGCCt < 1:440551/214‑1 (MQ=255) gAAAGCCCCGTCAAAGTCACCGACGTTTTTGTCGGGCGTGTCTTCCGGCGGCTGATTGACGGCCTGTTTTTCGTCCGCCAGGGAGTAAGCTCCTTTATTACGGCGATAGTGTGCCTGCACCAGCGAGGCCGCCGCTCGCGCCTGTTCGAAGGTCTCGGCCACTACCAGCGCAATGGCCTGATGATAGTGCTCAATAGTGGGGCCGCCTAACAGCCTGGCgn < 1:107704/221‑2 (MQ=255) ggcggcTGATTGACGGCCTGTTTTTCGTCNGCCAGGGAGNNAGNTCCTGNANNNCNNNGANAGTGTGCCTGCACCAGCGANGCNNCCGCTCNCGCCTGTTCGAAGGTCTCGACCACTa < 2:99856/118‑1 (MQ=255) ggcggcTGATTGAAGGCCTGTTTTTCGTCCGCCAGGGAGTAAGCTCCTTTATTACGGCGATAGTGTGCCTGCACCAGCGAGGCCGCCGCTCGCGCCTGTTCGAAGGTCTCGACCACTa > 1:99856/1‑118 (MQ=255) gCCTGTTTTTCGTCCGCCAGGGAGTAAGCTCCTTTATTACGGCGATAGTGTGCCTGCACCAGCGAGGCCGCCGCTCGCGCCTGTTCGANNGTCTCGNnc > 2:5631/1‑99 (MQ=255) aGCTCCTTTATTACGGCGATAGGGTGCCTGCACCAGCGAGGCCGCCGCTCGCGCCTGTTCGAAGGTCTCGACCACTACCAGCGCAATGGCCTGATGATAGTGCTCAATAGTGGGGCCGCCGAACAGCCTGACGGTGTTTTTGTGGCCTTTGCCGAGTGCCCCGTCGGTACTGGCGGTAATGACAGCCAGGACGGCCGGCGGTTTTTGCGCGGCGTCCGTATCAAGGGCGGTGAGGCGTCCTTTGGCAATgg < 1:400573/251‑1 (MQ=255) ccTTTATTACGGCGATAGTGTGCCTGCACCAGCGAGGCCGCCGCTCGCGCCTGTTCGAAGGTCTCGACCACTACCAGCGCAATGGCCTGATGATAGTGCTCAATAGTGGGGCCGCCTAACAGCCTGACGGTGTTTTTGTCGCCTTTGCCGAGTGCCCCGGCGTTACTGGCGGTAATGACAGCCAGTACGCCCGGCGCTTTTTGCGCGGCGTCCGTATCAAGGGCGGTGAGGCGTCCTTTGGCAATGGCg < 1:5631/249‑1 (MQ=255) gtgtGCCTGCACCAGCGAGGCCGCCGCTCGCGCCTGTTCGAAGGTCTCGACCACTACCAGCGCACTGGCCTGATGATAGTGCTCAATAGTGGGGCCGCCTAACAGCCTGACGGTGTTTTTGTCGCCTTTGCCGAGTGCCCCGGCGTTACTGGCGGTAAAGACAGCCCGTACACCCCGCGCTTTTTTCGCGGCGGCCGTATCCACGGCGGTGTGGCGTCCTTTGGCAATGGCGGAACCGACGGTATTGccct > 1:222140/1‑249 (MQ=255) gcCTGTTCGAAGGTCTCGACCACTACCAGCGCAATGGCCTGATGAGAGTGCTc < 1:176442/53‑1 (MQ=255) tGNTCGNANNTNNCGCNCACTACCAGCGCAATGGCCTGNNGATAGTGCTNAATAGTGGGGCCGCCTAACAGCCTGACGGTGTTTTTGTCGCCTTTGCCGAGTGNCCCGGCGTTNNTGNCGGTANTNNNANNNAGNACGCCCGGCGCTTTTTGCGNGGNNTCCGTANCAAGGGCGGTGAGGCGTCCTTTGGCa < 2:96526/192‑1 (MQ=255) | AGACGGCCATCGAGGCATGCGGCTCCATCGCCATATGGCTCTGGTCCGGGGTCGTGTAGGTAGCATCAATCTTCACCGCAGCGGAGGTGAAAGCCCCGTCAAAGTCACCGACGTTTTTGTCGGGCGTGTCTTCCGGCGGCTGATTGACGGCCTGTTTTTCGTCCGCCAGGGAGTAAGCTCCTTTATTACGGCGATAGTGTGCCTGCACCAGCGAGGCCGCCGCTCGCGCCTGTTCGAAGGTCTCGGCCACTACCAGCGCAATGGCCTGATGATAGTGCTCAATAGTGGGGCCGCCTAACAGCCTGGCGGTGTTTTTGTCGCCTTTGCCGAGTGCCCCGGCGTTACTGGCGGTAATGACAGCCAGTACGCCCGGCGCTTTTTGCGCGGCGTCCGTATCAAGGGCGGTGAGGCGTCCTTTGGCAATGGCGGAACCGACGATATAGCCAT > NC_000913/300340‑300786 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |