| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,630,852 | G→A | S176N (AGC→AAC) | yfgI → | nalidixic acid resistance protein YfgI |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,630,852 | 0 | G | A | 95.8% | 64.0 / NA | 25 | S176N (AGC→AAC) | yfgI | nalidixic acid resistance protein YfgI |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (13/10); minor base C (1/0); total (14/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AACGCGATCAAAGTTATGAAGATGAGCTACGCAGCTTAGAGATTCAGAAACAAAAACTGGCGCTGGCGAAAGAAGAAGCCCGCGTTAAGCGAGAAAACGAATTTATCGATCAGGAACTGAAGCACAAAGCTGCGCAAACCGATGTGGTGCAATCTGAAGCTGACGCCAACAGAAATATGACTGAAGGCGGTCGCGATCTGATGAAAAGCGTGGGCAAAGCAGAAGAGAACAAATCGGACAGCTGGTTTAATTAATCGATGTTAGTAACTTCAATCCTATAATTCTTGAAGATAAAAAACCCTCTGTAGTAACAGAGGGTTTTGTTCATTCATAGTGCAGGGTCAAATCATTCCCACTCAATGGTAGCTGGCGGCTTGCCGCTGATGTCATACACCACGCGGGAAATACCGTTCACTTCATTGATAATGCGGTTGGAAACGCGACCGAGGAAATCGTACGGCAGATG > NC_000913/2630612‑2631077 | aaCGCGCTCAAAGTTATGAAGATGAGCTACGCAGCTTAGAGATTCAGAAACAAAAACTGGCGCTGGCGAAAGAAGAAGCACGCGTTAAGCGAGAAAACGAATTTATCGATCAGGCACTGAAGCACAAAGATGCGCAAACCGATGTGGTGCAATCTGAAGCTGACGCCAACAGAAATATGACTGAAGGCGGTCGCGATCTGATGAAAAGCGTGGGCAAAGCAGAAGAGAACAAATCGGACAACTGGTttaat > 1:232801/1‑251 (MQ=255) gATCAAAGTTATGAAGATGAGCTACGCAGCTTAGAGATTCAGAAACAACAACTGGCGCTGGCGAAAGAGCAAGCCCGAGTTAAGCGAGAAAACGAATTTATCGATCAGGAACTGAAGCACAAAGATGCGCAAACAGATGTGGTGCAATCTGAAGCTGACGCCAACAGAAATATGACTGAAGGCGGTCGCGATCTGATGAAAAGCGTGGGCAAAGCAGAAGAGAACAAATCGGACAACTGGtt > 1:207013/1‑242 (MQ=255) ncTACGCAGCTTAGAGATTCAGAAACAAAAACTGGCGCTGGCGAAAGAAGAAGCCCGCGTTAAGCGAGAAAACGAATTTATCGATCAGGAACTGAAGCACAAAGCTGCGCAAACCGATGTGGTGCAATCTGAAGCTGACGCCAACAGAAATATGACTGAAGGCGGTCGCGATCTGATGAAAAGCGTAGGCAAAGCAGAAGAGAACAAATCGGACAACTGGTTTAATTAATCGATGTTAGTAACTTCAATcc > 1:280153/2‑251 (MQ=255) cccGCGTTAAGCGAGAAAACTAATTTATCGAGCAGGAACTGAAGCACAAAGCTGCGCAAACCGATGTGGTGCAATCTGAAGCTGACGCCAACAGAAATATGACGGAAGGCGGTTGCGATCTTATGAAAAGCGTGGGCAAAGCAGAAGAGAACAAATCGGACAACTGGTtta < 1:170821/171‑1 (MQ=255) gTTAAGCGAGCAAACGAATTTATAGATCAGGAACTGAAGAACAAAGCTGCGCAAACAGATGTGGTGAAATCTGAAGCTGCCGCCAACCGAAATATGACTGAAGGCGGACGCGATCTGATGAAAAGCGTGGGCACAGCAGAAGCGAACCAATCGGACAACTGGTTTAATTAATAGATGTTAGTAACTTCAATCCTATAATTCTTGAAGATAAAAAACCCTCTGAAGTAACAGAGTGTTTTGTtcattcat > 1:71390/1‑249 (MQ=255) gTTAAGCGAGAAAACGAATTTATCGATCAGGAACTGAAGCACAAAGCTGCGCAAACCGATGTGGTGCAATCTGAAGCTGACGCCAACAGAAATATAACTGAAGGCGGTCGCGATCTGATGAAAAGCGTGGGCCAAGCAGAAGAGAACAAATCGGACAACTGGTTTAATTAATCGATGTTAGTAACTTCAATCCTATAATTCTTGAAGATAAAAAACCCTCTGTAGTAAAAGAGGGTTTTGTtccttcat > 1:71371/1‑249 (MQ=255) aaCGAATTTATCGATCAGGAACTGAAGCACAAAGCTGCACAAACCGATGAGGTCCAATATGCAGCTGACGCCAACAGAAATATTACTGAAGGCGGTCACAATCTGATGAAAAGAGTGGGCAAAGCAGAAGCGACCAAATAGGACACCTGGTTTAATTAATCGATGTTAGTAACTTCAATCCTATCATTCTTGAAGATAAAAAACCCTCTGTAGTAACAGAGGGTTTTGTTCATTCATAGTGCAGGGTCaa > 1:171039/1‑250 (MQ=255) aaTTTATCGATCAGGAACTGAAGCACAAAGCTGCGCAAACCGATGTGGTGCAATCGGAAGCTGACGCCAACAGAAATGTGACTGAAGGCGGTCGCGATCTGATGAAAAGCGTGGGCAAAGCAGAAGAGAACAAATTGGACATCGGGTTTAATTAATCGATGTTAGTAGCTTCAGTCCTATAATTCTGGAAGAGTAAAAACCCTCTGTAGGATCTGAGGGTTTTGTTCATTCATAGTGCAGGTTCAAATCAt < 1:173265/251‑1 (MQ=255) aaCCGATGTGGTGCAATCTGAAGCTGACGCCAACAGAAATATGACTGAAGGCGGTCGCGATCTGATGAAAAGCGTGGGCAAAGCAGAAGAGAACAAATCGGACAACTGGTGTAATTAATCGATGTTAGTAACTTCAATCCTATAATTCTTGAAGATAAAAAACCCTCTGTAGTAACAGAGGGtttt < 1:184910/186‑1 (MQ=255) gtggtgCAATCTGAAGCTGACGCCAACAGAAATATGACTGAAGGCGGTCGCGATCTGATGAAAAGCGTGGGCAAAGCAGAAGAGAACAAATCGGACAACTGGTTTAATTAATCGATGTTAGTAACTTCAATCCTATAATTCTTGAAGATAAAAAACCCTCTGTAGTAACAGAGGGTTTTGTTCATTCATAGTGCAGGGTCAAATCATTCCCACTCAATGGTAGCTggcn < 1:51533/229‑2 (MQ=255) tggtgCAATCTGAAGCTGACGCCAACAGAAATATGACTGAAGGCGGTCGCGATCTGATGAAAAGCGTGGGCAAAGCAGAAGAGAACAAATCGGACAACTGGTTTAATTAATCGATGTTAGTAACTTCAATCCtnta > 2:274051/1‑136 (MQ=255) gCAATCTGAAGCTGACGCCAACAGAAATATGACTGAAGGCGGTCGCGATCTGATGAAAAGCGTGGGCAAAGCAGAAGAGAACAAATCGGACAACTGGTTTAATTAATCGATGTTAGTAACTTCAATCCTATAATTCTTGAAGATAAAAAACCCTCTGTAGTAACAGAGGGTTTTGTTCATTCATAGTGCAGGGTCAAATCATTCCCACTCAATGGTAGCTGGCGGCTTGCCGCTGATGTCATACACCAcgc < 1:95712/251‑1 (MQ=255) aTCTGAAGCTGACGCCAACAGAAATATGACTGAAGGCGGTCGCGATCTGATGAAAAGCGTGGGCAAAGCAGAAGAGAACAAATCGGACAACTGGTTTAATTAATCGATGTTAGTAACTTCAATCCTATAATTCTTGAAGAGAAAAAACCCTCTGTAGTAAc < 1:371702/161‑1 (MQ=255) nnnnnnnnnncTNNNNNAAANCGTAGGCAAAGCAGAAGAGAACAAATCGGACAACTGGTTTAATTAATCGATGTTAGTAACTTCAATCCTATAATTCTTGAAGATAAAAAACCCTCTGTAGTAACAGAGGGTTTTGTTCATTCATAGTGCAggg < 2:280153/144‑1 (MQ=255) cnANNTNNTGANAAGCGTGGGCAAAGCAGAAGANNACAAATCGGNCAACTGGTTTAATTAATCGATGTTAGTAACTTCAATCCTATAATTCTTGAAGANAAAAAACCCNNTGNAGTAANANNNGNNNTTNTTCATTCATAGTGCAGGGTNAANNCATTCCNACTCAATGGTAGCTGGCGGCTTGCCg < 2:104780/187‑1 (MQ=255) cgATCTGATGAAAAGCGTGGGCAAAGCAGAAGAGAACAAATCGGACAACTGGTTTACTTAATCGATGTTAGTAACTTCAATCCTATAATTCTTGAAGATAAAAAACCCTCTGTAGTAACAGAGGGTTTTGTTCATTCATAGTGCAGGGTCAAATCATTCCCACTCAATGGTAGCTGGCGGCTTGCCg > 1:104780/1‑187 (MQ=255) gATCTGATGAAAAGCGTGGGCAAAGCAGAAGAGAACAAATCGGACAACTGGTTTAATTAATCGATGTTAGTAACTTCAATCCTATAATTCTTGAAGATAAAAAACCCTCTGTAGTAACAGAGGGTTTTGTTCANTCANNNNNCannnnnn > 2:267984/1‑144 (MQ=255) cGTGGGCAAAGCAGAAGAGAACAAATCGGACAACTGGTTTAATTAATCTATGGTAGTAACTTCAATc < 1:127740/67‑1 (MQ=255) gTGGGNNAANNNGANNAGAACAAATCGGACAACTGGTTTNATTAATCGATGTTAGTAACTTCAATCCTANANTNCTTGNNGATNAAAAACCCTCNgtagta > 2:325261/1‑101 (MQ=255) tGGGCAAAGCAGAAGAGAACAAATCGGACAACTGGTTTAATTAATCGATGTTAGTAACTTCAATCCTATAATTCTTGAAGATAAAAAACCCTCTGTAGTAACAGAGGGTTTTGTTCATTCATAGTGCAGGGTCAAATCATTCCCACTCAATGGTAGCTGGCGGCTTGCCGCTGATGTCATACACCACGCGGGAAATACCGTTCACTTCATTGATAATGCGGTTGGAAAcgc > 1:139046/1‑231 (MQ=255) tGGGCAAAGCAGAAGAGAACAAATCGGACAACTGGTTTAATTAATCGATGATAGTAACTTCAATCATATAATTCTTGAAGATAAAAAACCCTCTGTAGTAACAGAGGGTTTTGTTCATTCATAGTGCAGGGTCAAATCATTCCCACTCAATGTTAGCTGGCGGCTTGCCGCTGATGTCATACACCACGCGGGAAATACCGTTCACTTCATTGATAATGCGGTTGGAAACGCGACTGAGGAAATCGTAc > 1:15167/1‑248 (MQ=255) aaaGCAGAAGAGAACAAATCGGACAACTGGTTTAATTAATCGATGTTAGTAACTTCAATCCTATAATTCTTGAAGATAAAAAACCCTCTGTAGTAACAGAGGGTTTTGTTCATTCATAGTGCAGGGTCAAATCATTCCCACTCAATGGTAGCTGGCGGCTTGCCGCTGATGTCATACACCACGCGGGAAATACCGTTCACTTCATTGATAATGCGGTTGGAAACGCGACCGAGGAAATCGTACGGCAGATg < 1:145150/251‑1 (MQ=255) cagagATCAAATCGGACAACTGGTTTAATTAATCGATGTTAGTAACTTCAATCCTATAATTCTTGAAGATAAAAAACCCTCTGTAGTAACAGAGGGTTTTGTTCATTCATAGTGCAGGGTCAAATCATTCCCACTCAATGGTAGCTGGCGGCTTGCCGCTGATGTCATACACCCCGCGGGAAATACAGTTCACTTCATTGATAATGCGGTTGGACACGCGACCGAGGAAATCGTACGGCAGa > 1:119131/2‑242 (MQ=255) aagaGAACAAATCGGACAACTGGTTTAATTAATCGATGTTAGTAACTTCAATCCTATAATTCTTGAAGATAAAAAACCCTCTGTAGTAACAGAGGGTTTTGTTCATTCATAGTGCAGGGTCAAATCATTCCCANTCannnnn > 2:280624/1‑137 (MQ=255) aagaGAACAAATCGGACAACTGGTTTAATTAATCGATGTTAGTAACTTCAATCCTATAATTCTTGAAGATAAAAAACCCTCTGTAGTAACAGAGGGTTTTGTTCATTCATAGTGCAGGGTCAAATCATTCCCACTCAATGGTAGCTGGCGGCTTGCCGCTGAtn < 1:280624/164‑2 (MQ=255) | AACGCGATCAAAGTTATGAAGATGAGCTACGCAGCTTAGAGATTCAGAAACAAAAACTGGCGCTGGCGAAAGAAGAAGCCCGCGTTAAGCGAGAAAACGAATTTATCGATCAGGAACTGAAGCACAAAGCTGCGCAAACCGATGTGGTGCAATCTGAAGCTGACGCCAACAGAAATATGACTGAAGGCGGTCGCGATCTGATGAAAAGCGTGGGCAAAGCAGAAGAGAACAAATCGGACAGCTGGTTTAATTAATCGATGTTAGTAACTTCAATCCTATAATTCTTGAAGATAAAAAACCCTCTGTAGTAACAGAGGGTTTTGTTCATTCATAGTGCAGGGTCAAATCATTCCCACTCAATGGTAGCTGGCGGCTTGCCGCTGATGTCATACACCACGCGGGAAATACCGTTCACTTCATTGATAATGCGGTTGGAAACGCGACCGAGGAAATCGTACGGCAGATG > NC_000913/2630612‑2631077 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |