| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,423,891 | C→T | V207I (GTA→ATA) | hisP ← | lysine/arginine/ornithine ABC transporter/histidine ABC transporter, ATP binding subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,423,891 | 0 | C | T | 94.1% | 42.2 / NA | 17 | V207I (GTA→ATA) | hisP | lysine/arginine/ornithine ABC transporter/histidine ABC transporter, ATP binding subunit |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (7/9); minor base G (0/1); total (7/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CAGCGGAAGCTGACTCGCAAATTCCCCATGAAAATACTCCGGCAGCGTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTGCTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTACCACCATGGTTTTCCCCTCTTCTGCCAGTTGCTGCATAATACGCAACACTTCGCCTACCAGTTCAGGATCGAGCGCCGAGGTAGGTTCATCAAACAGTAAAACTTCCGGTTCCATCGCCAGCGCCCGCGCGATAGAAACACGCTGTTGCTGACC > NC_000913/2423670‑2424044 | cAGCGGAAGCTGACTCGCAAATTCCCCATGAAAATACTCCGGCAGCGTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTGCTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTATCACCATGGTTTTCCCCTCTTCTGCCAGtt > 1:160082/1‑251 (MQ=255) gCGGAAGCTGACTCGCAAATTCCCCATGAAAATACTCCGGCAGCGTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATACCTGCTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTATCACCATGGTTTTCCCCTCTTCTGCCAGTtgc > 1:327741/1‑251 (MQ=255) cAAATTCCCCATGAAAATACTCCGGCAGCGTTAGCCACCGGAGAGGAAATTATTGCAGCGATCCCTAAAGGAACCGTTGCAGACGAGGGCTGTGCGGGTTGCCAAAGAACTGCTCCGGCGCGCCCTCTTCTGCTATTGTCCCCTGAGGGAGGAAAATGACATGAGTAGAAACATGGCTAGCAAAGCCCATTTCGTGAGTCACTATCACCATGGtt < 1:431363/215‑1 (MQ=255) ggAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTGCTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAATCCCATTTCGTGAGTCACTATCACCATGGTTTTCCCCGCTTCTGCCAGt < 1:156887/194‑1 (MQ=255) aaaTTATTTCAGCGATCCCTTAAGGAACCGTTGAAGAAGAGGGCTTTGCGGGTTGACAACTAACTGCTACGCGGCGCGCTATTCTTCTATTTTCCCATGATGGAGGAACATGACATGTGTAGAAACATGACGAGCAAAGCCCATTTCGTGAGTCACTATAACCATGGTTTTTCCCTCTTATGCCCGTTGCTGCATAATACGCACAACTTCGACTAACCTTTCAAGATCAAGAGCCGAGGTAAGTtcatca > 1:292595/1‑250 (MQ=255) cTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTGCTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTATCACCATGGTTTTCCCCTCTTCTGCCAGTTGCTGCATAATACGCAACACTTCGCCTACCAGTGCAGGATNg < 1:347069/211‑1 (MQ=255) ttGCGGGTTGCCAAATAACTGCTCCGGCGCGCCCTTTTCTTCTATTTTCCCCTGATGGAGGAAAATGACAGGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTATCACCATGGTTTTCCCCTCTTCTGCCAGTTGCTGCATAATACGCAACACTTCGCCTACCAGTTCAGGATCTAGCGCCGAGGTAGGTTCATCAAACAGTAAAACTTCCGGTTCCATCGCCAgc < 1:180990/235‑1 (MQ=255) gCCAAATAACTGCTCCGGCGCGCCCTCTTCTTCGATTTCCCCCTGATGGAGGAAAACTACAGGAGGAGGATCAGGGCGAGCAAAGCGCAGTTCCTGAGTCACTAGCACCAGGGTCTTCCCCGCTTCTGCCAGTTGCTGAATAATACGCAACACTTCGCCTACCAGTTCAGGATCGAGCGcc < 1:56424/181‑1 (MQ=255) ccAAATAACTGCTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGNGGAAAATGANNTGNGTAGANANNNGNNNAGNAAAGCCCATTTCGTGAGTCNCTNNCACCATNGTTTTCCCCTCTTCTGCCATTtgctg < 2:98347/137‑1 (MQ=255) ccAAATAACTGCTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTATCACCATGGTTTTCCCCTCTTCTGCCAGTtgctg > 1:98347/1‑137 (MQ=255) aaCTGCTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTATCCCTATGGTTTTCCCCTCTTCTGCCAGTGGCTGCATAATACGCAACACTTCGCCTACCAGTTCAGGATCTAGCGCCGAGTTAGGTTCATCAAACAGTAAAACTGCAGGTTCCATCGCCAGCGCCCGCGCGATAGAAACACGCTGTTGCTGAcc < 1:300840/251‑1 (MQ=255) nccTGNTGNAGGAAAATGACATGANTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTATCACCNNGNNNTNCCCCtctt < 2:314884/84‑1 (MQ=255) cccTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTATCACCATGGTTTTCCCCtctt > 1:314884/1‑85 (MQ=255) ccTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTATCACCATGGTTTTCCCCTCTTCTGCCAGTTTCTGCATAATACGCAACACTTCGCCGACCan < 1:112318/124‑2 (MQ=255) gACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTATCACCATGGTTTTCCCCTCTTCTGCCAGTTGCTGCATAATACGCAACACTTCGCCTACCAGTTCAGGATCGAGCGCCGAGGTAGGTncatnnnnn > 2:267941/1‑137 (MQ=255) gACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTATCACCATGGTTTTCCCCTCTTCTGCCAGTTGCTGCATAATACGCAACACTTCGCCTACCAGTTCAGGATCGAGCGCCGAGGTAGGTTCATCAAACAGTAAAACTTCCGGTTCCATCGCCAGCGCCCGCGCGATAGAAACACGCTGTTGCTGAcn < 1:267941/201‑2 (MQ=255) gTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTATCACCATGGTTTTCCCCTCTTCTGCCAGTTGCTGCATAATACGCAACACTTCGCCTACCAGTTCAGGATCGAGCGCCGAGGTAGGTTCATCAANCAGNNNNNCtnnnnnnnnnn > 2:272143/1‑144 (MQ=255) gTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTATCACCATGGTTTTCCCCTCTTCTGCCAGTTGCTGCATAATACGCAACACTTCGCCTACCAGTTCAGGATCGAGCGCCGAGGTAGGTTCATCAAACAGTAAAACTTCCGGTTCCATCGCCAgcgcn < 1:272143/165‑2 (MQ=255) | CAGCGGAAGCTGACTCGCAAATTCCCCATGAAAATACTCCGGCAGCGTTAGCCACCGGAGAGGAAATTATTTCAGCGATCCCTTAAGGAACCGTTGCAGACGAGGGCTTTGCGGGTTGCCAAATAACTGCTCCGGCGCGCCCTCTTCTTCTATTTTCCCCTGATGGAGGAAAATGACATGAGTAGAAACATGGCGAGCAAAGCCCATTTCGTGAGTCACTACCACCATGGTTTTCCCCTCTTCTGCCAGTTGCTGCATAATACGCAACACTTCGCCTACCAGTTCAGGATCGAGCGCCGAGGTAGGTTCATCAAACAGTAAAACTTCCGGTTCCATCGCCAGCGCCCGCGCGATAGAAACACGCTGTTGCTGACC > NC_000913/2423670‑2424044 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |