| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 3,822,651 | (CAGGAT)1→2 | coding (252/2109 nt) | spoT → | bifunctional (p)ppGpp synthase/hydrolase SpoT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3822646 = | 0 (0.000) | 20 (1.140) | 17/292 | 0.1 | 100% | coding (247/2109 nt) | spoT | bifunctional (p)ppGpp synthase/hydrolase SpoT |
| ? | NC_000913 | = 3822651 | 0 (0.000) | coding (252/2109 nt) | spoT | bifunctional (p)ppGpp synthase/hydrolase SpoT | |||||
AAAGCCTGAATCAACTGATTCAAACCTACCTGCCGGAAGACCAAATCAAGCGTCTGCGGCAGGCGTATCTCGTTGCACGTGATGCTCACGAGGGGCAAACACGTTCAAGCGGTGAACCCTATATCACGCACCCGGTAGCGGTTGCCTGCATTCTGGCCGAGATGAAACTCGACTATGAAACGCTGATGGCGGCGCTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGGGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGTGCAGGATATCCGCGTCATCCTCATCAAACTTGCCGACCGTACCCACAACATGCGCACGCTGGGCTCACTTCGCCCGGACAAACGTCG > NC_000913/3822413‑3822866 | tgaatcaactgattcaaacctacctgccggaagaccaaatcaagcgtctgcggcaggcgtatcgcgttgcacgtgatgctcacgaggggcaaacacgttcaagcggtgaaccctatatcacgcacccggtagcgggtgcctgcattctggccgagatgaaactcgactatgaaacgcggatggcggcgctgctgcatgacgtgattgaagatgctcccgccacctaccaggatCAGGATATgg > 1:179767‑M1/234‑243 (MQ=255) tGAATCAACTGATTCAAACCTACCTGCCGGAAGACCAAATCAAGCGTCTGCGGCAGGCGTATCGCGTTGCACGTGATGCTCACGAGGGGCAAACACGTTCAAGCGGTGAACCCTATATCACGCACCCGGTAGCGGGTGCCTGCATTCTGGCCGAGATGAAACTCGACTATGAAACGCGGATGGCGGCGCTGCTGCATGACGTGATTGAAGATGCTCCCGCCACCTACCAGGATcaggatatgg > 1:179767‑M2/1‑233 (MQ=255) acaACTGATTCAAACCTCCCTGCCGGAAGACCAAATCAAGCGTCTGCGGCAGGCGTATCTCGTTGCACGTGATGCTCACGAGGGGCAAACACGTTCAAGCGGTGAACCCTATATCACGCACCCGGTAGCGGTTGCCTGCATTCTGGCCGAGATGAAACTCGACTATGAAACGCTGATGGCGGCGCTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATcagga > 1:32342‑M2/2‑229 (MQ=255) gccggaagaccaaatcaagcgtctgcggcaggcgtatctcgttgcacgtgatgctcacgaggggcaaacacgttcaagcggtgaaccctatatcacgcacccggtagcggttgcctgcattctggccgagatgaaactcgactatgaatcgctgatggcggcgctgctgcatgacgtgattgaagatactcccgccacctaccaggatCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTgg < 1:450955‑M1/43‑1 (MQ=255) gCCGGAAGACCAAATCAAGCGTCTGCGGCAGGCGTATCTCGTTGCACGTGATGCTCACGAGGGGCAAACACGTTCAAGCGGTGAACCCTATATCACGCACCCGGTAGCGGTTGCCTGCATTCTGGCCGAGATGAAACTCGACTATGAATCGCTGATGGCGGCGCTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATcaggatatggaacagctttttggtaaaagcgtcgccgagctgg < 1:450955‑M2/251‑44 (MQ=255) gcgtctgcggcatgcgtatctctttgcacgtgatgctcacgaggggcaaacccgttcaagcggtgaaccctatatcacgcacccggtagcggttgcctgcattctggccgagatgaaactcgattatgaaacgctgagggcggcgctgctgcatgacgtgattgaagatactcccgccacctaccaggatCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGTGGGTGTCGAAAc > 1:307712‑M1/191‑251 (MQ=255) gCGTCTGCGGCATGCGTATCTCTTTGCACGTGATGCTCACGAGGGGCAAACCCGTTCAAGCGGTGAACCCTATATCACGCACCCGGTAGCGGTTGCCTGCATTCTGGCCGAGATGAAACTCGATTATGAAACGCTGAGGGCGGCGCTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATcaggatatggaacagctttttggtaaaagcgtcgccgagctggtagagtgggtgtcgaaac > 1:307712‑M2/1‑190 (MQ=255) acgtatctcgttgcacgtgatgctcacgcggttcaaacacgttcaagcggagaacactatatcacgcacccggtagcggttgcctgcattctggcagagatgacactagactatgaacagctgatggcggcgctgctggatgacgtgattgaagatactcccgccacctaccaggatCAGGCTATGAAACCACTTTTTGGTAAAAGCGTCGCCGCGCTGGTAGAGGGGGTGTCGAAACTTGATAAACTCa < 1:338839‑M1/73‑1 (MQ=255) acgTATCTCGTTGCACGTGATGCTCACGCGGTTCAAACACGTTCAAGCGGAGAACACTATATCACGCACCCGGTAGCGGTTGCCTGCATTCTGGCAGAGATGACACTAGACTATGAACAGCTGATGGCGGCGCTGCTGGATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATcaggctatgaaaccactttttggtaaaagcgtcgccgcgctggtagagggggtgtcgaaacttgataaactca < 1:338839‑M2/249‑74 (MQ=255) gtgaaccctatatcacgcacccggtagcggttgcctgctatatggccgagatgaaaatcgagtctgacaagctgatggcggcgctgctgcatgccgtgattgaagatactcccgccacctcacaggatCAGGAAATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGAAGAGGGGGTGTCGAAACTTGATAAAc < 1:241251‑M1/70‑1 (MQ=255) accctatatcacgcacccggtagcggttgcctgcattctggccgagatgaaactcgactatgaaacgctgatggcggcgctgctgcatgacgtgattgatgatactcccgccacctaccaggatCAGGATATGGAACAGCTTTTTGGTTAAAGCGTCGCCGAGCTGGTAGAGGGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAgat < 1:439527‑M1/119‑1 (MQ=255) gTGAACCCTATATCACGCACCCGGTAGCGGTTGCCTGCTATATGGCCGAGATGAAAATCGAGTCTGACAAGCTGATGGCGGCGCTGCTGCATGCCGTGATTGAAGATACTCCCGCCACCTCACAGGATcaggaaatggaacagctttttggtaaaagcgtcgccgagctggaagagggggtgtcgaaacttgataaac < 1:241251‑M2/198‑71 (MQ=255) aCCCTATATCACGCACCCGGTAGCGGTTGCCTGCATTCTGGCCGAGATGAAACTCGACTATGAAACGCTGATGGCGGCGCTGCTGCATGACGTGATTGATGATACTCCCGCCACCTACCAGGATcaggatatggaacagctttttggttaaagcgtcgccgagctggtagagggggtgtcgaaacttgataaactcaagttccgcgataagaaagaggcgcaggccgaaaactttcgcaagat < 1:439527‑M2/243‑120 (MQ=255) ttcctgcattctggccgagatgaaactcgactatgaagcgctgatggcggagatgccgaatgacgtgattgaagatactcctgccacctaccaggatCAGGATATGGAAAAGCTTTTTGGTAAAAGCGTCg < 1:420781‑M1/34‑1 (MQ=255) gcctgcattctggccgagatgaaactcgactatgaaacgctgatggcggcgcggctgcatgacgtgatggaagatactcccgccacctaccaggatCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAggggg > 1:240314‑M1/97‑148 (MQ=255) cctgcattctggccgagatgaaactcgactatgaaacgctgctggcggcgctgctgcatgacgtgattgaagatactcccgccacctaccaggatCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGGGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGTGCAGGATATc < 1:444749‑M1/144‑1 (MQ=255) ctgcattctggccgagatgaaactcgactatgaaaagctgatggcggcgcagctgcatgacgtgattgacgatactcccgccacctaccaggatCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGGGGGTGTc < 1:396718‑M1/56‑1 (MQ=255) ttcctgCATTCTGGCCGAGATGAAACTCGACTATGAAGCGCTGATGGCGGAGATGCCGAATGACGTGATTGAAGATACTCCTGCCACCTACCAGGATcaggatatggaaaagctttttggtaaaagcgtcg < 1:420781‑M2/129‑35 (MQ=255) gCCTGCATTCTGGCCGAGATGAAACTCGACTATGAAACGCTGATGGCGGCGCGGCTGCATGACGTGATGGAAGATACTCCCGCCACCTACCAGGATcaggatatggaacagctttttggtaaaagcgtcgccgagctggtagaggggg > 1:240314‑M2/1‑96 (MQ=255) ccTGCATTCTGGCCGAGATGAAACTCGACTATGAAACGCTGCTGGCGGCGCTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATcaggatatggaacagctttttggtaaaagcgtcgccgagctggtagagggggtgtcgaaacttgataaactcaagttccgcgataagaaagaggcgcaggccgaaaactttcgcaagatgattatggcgatggtgcaggatatc < 1:444749‑M2/239‑145 (MQ=255) cTGCATTCTGGCCGAGATGAAACTCGACTATGAAAAGCTGATGGCGGCGCAGCTGCATGACGTGATTGACGATACTCCCGCCACCTACCAGGATcaggatatggaacagctttttggtaaaagcgtcgccgagctggtagagggggtgtc < 1:396718‑M2/150‑57 (MQ=255) ggccgagatgaaactcgactatgaaacgctgatggcggcgctgctgcatgacgtgattgaagatactcccgccacctaccaggatCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGGGGGTGTCGAAACTTGATAAACTCAAGTTCcgc > 1:157523‑M1/86‑166 (MQ=255) ggCCGAGATGAAACTCGACTATGAAACGCTGATGGCGGCGCTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATcaggatatggaacagctttttggtaaaagcgtcgccgagctggtagagggggtgtcgaaacttgataaactcaagttccgc > 1:157523‑M2/1‑85 (MQ=255) ctgctgcatgacgtgattgaagatactcccgccacctaccaggatCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGGGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGAtaagan < 2:271130‑M1/89‑2 (MQ=255) gatgtattgacgtgattgaagatactcccgccacctaccaggatCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGGGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGTGCAGGATATCCGCGTCATCCTCATCAAACTTGc > 1:222163‑M1/45‑211 (MQ=255) gctgcatgacgtgattgaagatactcccgccacctaccaggatCAGGATATGGAACAGCTTTTTAGTAAAAGCGTCGCCGAGCTGGTAGAGGGGGTGTCGTAACTTGAGAAACTCAAGTTCCGCTATAAGAAAGAGGCGCAGGACGAAAACTGTCGCAAGATGATGACGGCGGTGGGGCAGGATATCCGCGCCATCCGCATCAAACTTTCCGACCGTACCCACAACATTCGCACGCTGGGCTCACTTCg > 1:437796‑M1/44‑249 (MQ=255) gctgcatgacgtgattgaagatacgccctccacctaccaggatCAGGATATGGAACAGCTTTTTGGTAAAATCGTCGCCGAGCTGGTAGAggg > 1:407748‑M1/44‑93 (MQ=255) ctgcatgacgtgattgaagatactcccgccacctaccaggatCAGGATATGGAACAGCTTTTTGGTAAAAGCGCCGCCGAGCTGGTAGAGGGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTAGCAAGCTGATTATGGCGATGGTTCAGGATATCCGCGTCATCCTCATCAAACTTGCCGACCGGACCCACAACATGCGCACGCTGTGCTCacttccgat < 1:322296‑M1/209‑5 (MQ=255) ctgctgCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATcaggatatggaacagctttttggtaaaagcgtcgccgagctggtagagggggtgtcgaaacttgataaactcaagttccgcgataagan < 2:271130‑M2/134‑90 (MQ=255) gatgtattgacgtgaTTGAAGATACTCCCGCCACCTACCAGGATcaggatatggaacagctttttggtaaaagcgtcgccgagctggtagagggggtgtcgaaacttgataaactcaagttccgcgataagaaagaggcgcaggccgaaaactttcgcaagatgattatggcgatggtgcaggatatccgcgtcatcctcatcaaacttgc > 1:222163‑M2/8‑44 (MQ=255) gctgcATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATcaggatatggaacagctttttagtaaaagcgtcgccgagctggtagagggggtgtcgtaacttgagaaactcaagttccgctataagaaagaggcgcaggacgaaaactgtcgcaagatgatgacggcggtggggcaggatatccgcgccatccgcatcaaactttccgaccgtacccacaacattcgcacgctgggctcacttcg > 1:437796‑M2/1‑43 (MQ=255) gctgcATGACGTGATTGAAGATACGCCCTCCACCTACCAGGATcaggatatggaacagctttttggtaaaatcgtcgccgagctggtagaggg > 1:407748‑M2/1‑43 (MQ=255) ctgcATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATcaggatatggaacagctttttggtaaaagcgccgccgagctggtagagggggtgtcgaaacttgataaactcaagttccgcgataagaaagaggcgcaggccgaaaactttagcaagctgattatggcgatggttcaggatatccgcgtcatcctcatcaaacttgccgaccggacccacaacatgcgcacgctgtgctcacttccgat < 1:322296‑M2/251‑210 (MQ=255) acgtgattgaagatactcctgccacctaccaggatCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGCGGGAGCGTCGAAACTTGCTAAACTCAAGTTCCGCGATAAGAAAGACGCGCAGCCCGAAAACTTTCGCAAGATGATTATGGCGATGGTGCAGGATATCCGCGTCATCCTCATCAAACTTGCCGACCGTACCCACAACATGAGCACGCTGGGCTCACTTCgcccggccaa < 1:392160‑M1/215‑5 (MQ=255) nattgaagatactcccgccacctaccaggatCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGGGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGcc < 1:40566‑M1/102‑1 (MQ=255) aCGTGATTGAAGATACTCCTGCCACCTACCAGGATcaggatatggaacagctttttggtaaaagcgtcgccgagctggtagcgggagcgtcgaaacttgctaaactcaagttccgcgataagaaagacgcgcagcccgaaaactttcgcaagatgattatggcgatggtgcaggatatccgcgtcatcctcatcaaacttgccgaccgtacccacaacatgagcacgctgggctcacttcgcccggccaa < 1:392160‑M2/250‑216 (MQ=255) natTGAAGATACTCCCGCCACCTACCAGGATcaggatatggaacagctttttggtaaaagcgtcgccgagctggtagagggggtgtcgaaacttgataaactcaagttccgcgataagaaagaggcgcaggcc < 1:40566‑M2/132‑103 (MQ=255) ggatCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTCGAgg < 1:366724‑M1/49‑1 (MQ=255) ggatcaggatatggaacagctttttggtaaaagcgtcgccgagctggtcgagg < 1:366724‑M2/53‑50 (MQ=255) | AAAGCCTGAATCAACTGATTCAAACCTACCTGCCGGAAGACCAAATCAAGCGTCTGCGGCAGGCGTATCTCGTTGCACGTGATGCTCACGAGGGGCAAACACGTTCAAGCGGTGAACCCTATATCACGCACCCGGTAGCGGTTGCCTGCATTCTGGCCGAGATGAAACTCGACTATGAAACGCTGATGGCGGCGCTGCTGCATGACGTGATTGAAGATACTCCCGCCACCTACCAGGATATGGAACAGCTTTTTGGTAAAAGCGTCGCCGAGCTGGTAGAGGGGGTGTCGAAACTTGATAAACTCAAGTTCCGCGATAAGAAAGAGGCGCAGGCCGAAAACTTTCGCAAGATGATTATGGCGATGGTGCAGGATATCCGCGTCATCCTCATCAAACTTGCCGACCGTACCCACAACATGCGCACGCTGGGCTCACTTCGCCCGGACAAACGTCG > NC_000913/3822413‑3822866 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |