New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	168704 =	0 (0.000)	7 (0.420)	5/276	1.1	100%	coding (1221/2244 nt)	fhuA	ferrichrome outer membrane transporter/phage receptor
	?	NC_000913	182989 =	0 (0.000)					coding (527/1158 nt)	cdaR	DNA‑binding transcriptional activator CdaR

AGAATCTGCGTAAATATGGCGAACTGGTCTGCATGACGGCTGAAATGATGCTGGAACAGTCGCGGTTGATGCACTTGTTGGCGCAGGATAGCCGTTTGCGGGAAGAACTGGTGATGAACCTGATTCAGGCAGAGGAGAATACTCCCGCACTTACTGAATGGGCGCAACGGCTGGGGATCGATCTCAATCAACCGCGAGTGGTGGCTATTGTTGAGGTCGACAGCGGTCAGCTTGGCGTGGACAGCGCAATGGCGGAGTTACAACAACTGCAAAACGCGCTGACTACGCCCGAGCGTAATAATCTGGTGGCGATTGTCTCGCTAACCGAAATGGTGGTGTTGAAACCGGCGTTGAACTCTTTTGGGCGCTGGGATGCAGAAGATCATCGTAAGCGAGTTGAACAACTGATTACCCGCATGAAAGAGTACGGCCAGCTGCGTTTTCGCG  >  NC_000913/182758‑183204                                                                                                                                                                                                                                        |                                                                                                                                                                                                                        ccgcctagggtgaccagcactttatcccactgcgcctgatcctgaacataaacgcccgtttgtttctgtttattcagaatgcggtaagggccggagtttgccggatctttggcattgaagtcgaaatcggtattcaccggattgtacagattgagcagtggcacagagtcgtcgtaaccaaaccaggcgttgatgtcattacgcatacgcataaagtcgacaccggtcagcTTGGCGTGGACAGCGCAatn                                                                                                                                                                                                      <  1:359113‑M2/20‑2 (MQ=255)                                   nctgatcctgaacataaacgcccgtttgtttctgtttattcagaatgcggtaagggccggagtttgccggatctttggcattgaagtcgaaatcggtattcaccggattgtacagattgagcagtggcacagagtcgtcgtaaccaaaccaggcgttgatgtcattacgcatacgcataaagtcgacaccggtcagcTTGGCGTGGACAGCGCAATGGCGGAGTTACAACAACTGCAAAACGCGCTGACt                                                                                                                                                                     >  1:40830‑M2/198‑250 (MQ=255)                                      gatcctgaacataaacgcccgtttgtttctgtttattcagaatgcggtaagggccggagtttgccggatctttggcattgaagtcgacatcggtattcaccggattgtacagattgagcagtggcacagagtcgtcgtaaccaaaccaggcgttgatgtcattacgcatacgcataaagtcgacaccggtcagcTTGGCGTGGACAGCGCAATGGCGGAGTTACAACAACTGCAAAACGCGCTGACTACGc                                                                                                                                                                 >  1:445265‑M2/195‑251 (MQ=255)                                                                                                                gcattgaagtcgaaatcggtattcaccggattgtacagattgagcagtggcacagagtcgtcgtaaccaaaccaggcgttgatgtcattacgcatacgcataaagtcgacaccggtcagcTTGGCGTGGACAGCGCAATGGCGGAGTTACAACAACTGCAAAACGCGCTGACTACGCCCGAGCGTAATAATCTGGTGGCGATTGTCGCGCTAACCGAAATGGGGGTGTTGAAAc                                                                                                        <  1:136822‑M2/114‑1 (MQ=255)                                                                                                                                                              gtggcacagagtcgtcgtaaccaaaccaggcgttgatgtcattacgcatacgcatacagtcgacaccggtcagcTTGGCGTGGACAGCGCACTGGCGGAGTTACAACACATGCAAACCGCGCTGACTACGCCCGAGCGTAATAATCTGGTGGCGATTGTCTCGCTAAc                                                                                                                            >  1:365010‑M2/75‑168 (MQ=255)                                                                                                                                                                                                     cattacgcatacgcataaagtcgacaccggtcagcTTGGCGTGGACAGCGCAATGGCGGAGTTACAACAACTGCAAAACGCGCTGACTACGCCCGAGCGTAATAATCTGGTGGCGATTGTCTCGCTAACCGAAATGGTGGTGTTGAAACCGGCGTGGAACTCTGTTGGGCGCTGGTATGCAGAAGATCATCGTAATCGAGTTGAACAACTGATTACCCGCATGAAAGAGTACGGCCAGCTGCGTTTTcgcg  <  1:75733‑M2/216‑1 (MQ=255)                                                                                                                                                                                                                           gacaccggtcagcTTGGCGTGGACAGCGCCAAGGCGGCGTTACAACAACTGCACAACGCGCTGACTACGCCCGAGCGTACTCATCTGGTGGCGATTGTCTCGCTAACCGAAATGGTGGTGTTGAAACCGGCGTTGAACTCTTTTGGGCGCTGGGATGCAGAAGATCATCGTAAGCGAGTTGAACAACTGATTACCCGCatgacag                          >  1:387910‑M2/14‑202 (MQ=255)                                                                                                                                                                                                                                       cTTGGCGTGGACAGCGCAATGGCGGATTTACAACAACTGCAAAACGCGCTGACTACGCCCGAGCGTAATAATCTGGTGGCGATTGTCTCGCTAACCGAAAtggtgg                                                                                                                 <  1:288010/106‑1 (MQ=255)                                                                                                                                                                                                                                        |                                                                                                                                                                                                                        AGAATCTGCGTAAATATGGCGAACTGGTCTGCATGACGGCTGAAATGATGCTGGAACAGTCGCGGTTGATGCACTTGTTGGCGCAGGATAGCCGTTTGCGGGAAGAACTGGTGATGAACCTGATTCAGGCAGAGGAGAATACTCCCGCACTTACTGAATGGGCGCAACGGCTGGGGATCGATCTCAATCAACCGCGAGTGGTGGCTATTGTTGAGGTCGACAGCGGTCAGCTTGGCGTGGACAGCGCAATGGCGGAGTTACAACAACTGCAAAACGCGCTGACTACGCCCGAGCGTAATAATCTGGTGGCGATTGTCTCGCTAACCGAAATGGTGGTGTTGAAACCGGCGTTGAACTCTTTTGGGCGCTGGGATGCAGAAGATCATCGTAAGCGAGTTGAACAACTGATTACCCGCATGAAAGAGTACGGCCAGCTGCGTTTTCGCG  >  NC_000913/182758‑183204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.