| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1979271 = | 0 (0.000) | 19 (1.080) | 15/292 | 0.1 | 100% | intergenic (‑56/‑482) | insA5/uspC | IS1 family protein InsA/universal stress protein C |
| ? | NC_000913 | = 2102947 | NA (NA) | pseudogene (443/446 nt) | wbbL | interrupted rhamnosyltransferase WbbL | |||||
GCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGC > NC_000913/1979076‑1979477 | gatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGtt < 1:342605‑M1/56‑1 (MQ=255)gataacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatccgggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGtt < 1:342595‑M1/56‑1 (MQ=255) ccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcagatcagggacgtgttcgcgccttccttaaCATAAATGGATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgc > 1:338887‑M1/185‑251 (MQ=255) gctccatgcgggacaagaaagtctcttttctggtctgacggcgcttactgctcaattccctgtcggcgaaggtaggttgatgcctaatgatgaatcctgttctatggccccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAACTGTATAAGTCATACTTTTGTTTTGGGTGTATTTCATTCTGTTAAAAAGTTTttcgat < 1:230806‑M1/63‑3 (MQ=255) ctcttttctggtctgacggcgcttaatgctgaattcactgtctgcgaaggtaagttgatgactcatgatgaaacctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaagc < 1:261549‑M1/75‑1 (MQ=255) gcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagctgtcaaacatgatctcatatcagggacttgatcgcaccttccctacCATAAATGTATACGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTAGCTACGCTag < 1:21972‑M1/70‑1 (MQ=255) gaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacctgctctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAc < 1:175662‑M1/131‑1 (MQ=255) ggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgactaacatgatctcatatcagggacttgttcgcaccttccttaaCATACATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTc < 1:229760‑M1/60‑1 (MQ=255) ggcgaaggtaagttgatgacgcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTGTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcg > 1:296806‑M1/97‑157 (MQ=255) gtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTc < 1:154747‑M1/60‑1 (MQ=255) gttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatctcaaggccttgttcgcaccttccttccCATAAATGCATAAGTCCTACTTTTGTCTTGGGCGTATTTCAATCTGTTAAAAAGttt < 1:437975‑M1/57‑1 (MQ=255) catgatgaatcctgttctatggctccagatgacaaacatgatctcatagcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaagc > 1:165265‑M1/76‑150 (MQ=255) gctccagatgacaaacatgatctcatatcagtgacttgttctcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGtttt > 1:305509‑M1/55‑112 (MQ=255) gctccagangnnnannatgatctcatatcagggacttgttcgcaccttccttaaCATAAANGTATAAGTCATACTTNTGNTTTGNGTGNATTTCAATCTGTTAAAAAGtttt < 2:305509‑M1/58‑1 (MQ=255) naaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGc < 1:38380‑M1/207‑1 (MQ=255) caggganntgttcgcactttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTACAATCAGTTAAAAAGTTTTtcgcgacgctaa > 2:21972‑M1/27‑95 (MQ=255) tcgcaccttccttaaCATAAATGTATAAGTCATAATTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAAc < 1:381356‑M1/86‑1 (MQ=255) cgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTTAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATCAATAATCACTTTCATGCAATAc < 1:203063‑M1/174‑1 (MQ=255) ncaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGctatac < 1:78649‑M1/153‑2 (MQ=255) cATAAATGTATAAGTCCTACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAACGTTCTTCGCTACGATTGAAAGCTAAAATGTAACAAGAATAATCGAAATGGGATGTTGCGCACTGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATc > 1:64613/1‑159 (MQ=255) | GCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGC > NC_000913/1979076‑1979477 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |