New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 366466	11 (0.630)	11 (0.630)	8/292	0.6	66.7%	coding (1045/1083 nt)	lacI	DNA‑binding transcriptional repressor LacI
	?	NC_000913	1308785 =	0 (0.000)					intergenic (‑140/‑3)	clsA/yciY	cardiolipin synthase A/uncharacterized protein YciY

TTGTAAAACGACGGCCAGTGAATCCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGGGCGCCAGGGTGGTTTTTCTTTTCACCAGTGAGACGGGCAACAGCTGATTGCCCTTCACCGCC‑TGGCCCTGAGAGAGTTGCAGCAAGCGGTCCACGCTGGTTTGCCCCAGCAGGCGAAAATCCT  >  NC_000913/366267‑366639                                                                                                                                                                                                        |                                                                                                                                                                               gcaggtcgacggatccggggaattcgtaatcatggtcatAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAAGGAGTGGGCTAACTCACATTAATTGCGTTGCACTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGaacatgaagcggagtagaacgga                                                                                                                                                         <  1:421441‑M1/204‑24 (MQ=255)  tGTAAAACGACGGCCAGTGAATCCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGcc                                                                                                                                                             <  1:384303/218‑1 (MQ=255)                                    tCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGaacatgaagcggagtagaacggaagtggggcgctggcgcatgcagcgtcaggn                                                                                                                           <  1:39859‑M1/218‑54 (MQ=255)                                                     gtgAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGaacatgaagcggagtagaacggaagtggggcgctggcgcatgcagcgtcaggctagc                                                                                                                       <  1:413837‑M1/205‑58 (MQ=255)                                                             gTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATCAAGTGTAAAGCATGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGCAACCTGTCGTGCCAGaacatgaagcggagtagaacggaagtggggcgctggcgca                                                                                                                                        >  1:235623‑M1/1‑140 (MQ=255)                                                             gTTATCCGCTCACAATTCCACACAACAGGCGAGCC‑GAAGCATAAATTTTAAAGCCTGGGGTTCCTAATGAGTGAGCTAACTCACATTAATTGCGTGGCGCTCACTTCCCGCTTTCCAGTCTGGAAACCTGTCGTGCCAGatcatgaagcggagtagaac                                                                                                                                                            <  1:400955‑M1/159‑21 (MQ=255)                                                              ttATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATGGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGGGCGCCAGGGTGGTTTTTCTTTTCACCAGTGAGACGGGc                                                                                        <  1:74852/227‑1 (MQ=255)                                                                  ccgctctcaaaaccACACAACAGACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGATCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTGCCAGGCGGGAAACCTGGCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGt                                                                                                                                   <  1:209277/168‑1 (MQ=255)                                                                                     acaTGCGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGaacatgaagcggagtagaacggaagtggggcgctggcgcatgcagcgtcaggctagccgacgtaaatcgcgttggcttgaggggcaatcg                                                                                      <  1:185210‑M1/206‑91 (MQ=255)                                                                                              ccGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGGGCGCCAg                                                                                                                       <  1:97034/164‑1 (MQ=255)                                                                                                                  gCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGGGCGCCAGGGTGGTTTTTCTTTTCACCAGTGAGACGGGCAACAGCTGATTGCCCTTCACCGCC‑TGGCCCTGAGAGAGTTGCAGCAAGCGGTCCACGCTGGTTTGCCCCAGCAGGc           <  1:200586/251‑1 (MQ=255)                                                                                                                      ggggTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGGCGGGAAACCTGTCGTGCCAGaacatgaagcggagtagaacggaagtggggcgctggcgcatgcagcgtcaggctagccgacgtaaatcgcgttggcttgaggggcaatcgcgccgaaatatgcg                                                                        <  1:139491‑M1/187‑105 (MQ=255)                                                                                                                        ggggcctAATGAGTGAGCTAACTCACATTAATTGCGTTGAGATCACTGCCCGATTTCAAGTCGGGAAACCTGTAGTGCCAGaaaatgaagcggagtagaacggaagtggggcgatggcgcatgtagcgtcaggctagccgacgtacatagcgttggcttgaggggcaatcgcgccgagatatgcgtatacacagcatccggaagagcattctcaacaaacagcgtaactcgttattgtttgcgatctaca       >  1:295262‑M1/4‑81 (MQ=255)                                                                                                                         gTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCACACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGACTCGGCCAACGCGCGGGGAGAgg                                                                                                                                             >  1:438924/1‑115 (MQ=255)                                                                                                                           gCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGTGTATTTGGGGCCCGGGGGGGTTTTTTTTTCACCAGGGAGACGGGGAACAGCTGATTGCCCTTCACCGCCCTGGCCC‑GAGAGAGTTGCAGGAAGCGGGCCACGCCGGGTTGCCCCCGCCGGCGgaaaaccc  >  1:12179/1‑247 (MQ=255)                                                                                                                                   agtgagCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGaacatgaagcggagtagaacggaagtggggcgctggcgcatgcagcgtcaggctagccgacgtaaatcgcgttggattgcggggcaatcgcgccgaaatatgcgtatccacagcatcaggaagtgcattctaaacaaacagc                                  >  1:233347‑M1/1‑70 (MQ=255)                                                                                                                                    gtgagCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGaacatgaagcggagtagaacggaagtggggcgctggcgcatgcagcgtcaggctagccgac                                                                                                                   <  1:342759‑M1/130‑62 (MQ=255)                                                                                                                                                                 cTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAAGCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGGGCGCCAGGGTGGTttttcttttc                                                                                                       <  1:60406/113‑1 (MQ=255)                                                                                                                                                                                   nnnnnnnnnncTNNNNNGCCNGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGGGCGCCAGGGTGGTTTTTCTTTTCACCAGTGAGACGGGCAACAGCTGATTGCCCTTCACCGCC‑TGGCCCTGAGAGAGTTgcag                                           <  2:279351/144‑1 (MQ=255)                                                                                                                                                                                     cGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCgggg                                                                                                                                                  <  1:16853/50‑1 (MQ=255)                                                                                                                                                                                     cGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCgggg                                                                                                                                                  >  2:16853/1‑50 (MQ=255)                                                                                                                                                                                                 cGTGCCAGaacatgaagcggagtagaacggaagtggggcgctggcgcatgccgagtcaggctagccgacgtacctcgcgttggcttgaggggcaatcg                                                                                      >  1:439297‑M1/1‑8 (MQ=255)                                                                                                                                                                                                        |                                                                                                                                                                               TTGTAAAACGACGGCCAGTGAATCCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGGGCGCCAGGGTGGTTTTTCTTTTCACCAGTGAGACGGGCAACAGCTGATTGCCCTTCACCGCC‑TGGCCCTGAGAGAGTTGCAGCAAGCGGTCCACGCTGGTTTGCCCCAGCAGGCGAAAATCCT  >  NC_000913/366267‑366639

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.