| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,793,377 | Δ1 bp | coding (182/750 nt) | btuD ← | vitamin B12 ABC transporter ATP binding subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,793,377 | 0 | T | . | 92.9% | 89.8 / 1.0 | 28 | coding (182/750 nt) | btuD | vitamin B12 ABC transporter ATP binding subunit |
| Reads supporting (aligned to +/- strand): ref base T (0/2); new base . (10/16); total (10/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.24e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01 | |||||||||||
ACCGCCGGAAAGTTGATTGGTGCTACGTCCGAGTTTGTCATCAAGAGCCAGCGCCCCTGCGACATCATTCAGTAGTTCGGTACGCGTTTTATCGTGCTGATGCAGTGTCAGGTAGTGCCAGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCACCAGGTGCAGGATCTCCCCAGCCCGAACCTCGCCAGAAAGCGGCCCCAGGCGGGTAGATTCCGCAACATCTTGTAACTGCATCACAATAGACATTATTTTGCCAACGCCAGTTTAATGCTTTCCATCACAATGGGATCTTCCGGCGTCATATC > NC_000913/1793169‑1793617 | aCCGCCGGAAAGTTGATTGGTGCTACGGCCGAGTTTGTCATCAAGAGCCAGCGCCCCTGCGACATCATTCAGTAGTTCGGTACGCGTTTTATCGTGCTGATGCAGTGTCAGGTAGTGCCAGACCGGCGTTGCAAACGGCGGCTTCTGCTGGTGTGAAAGATAAGCGCGGCGCAGCGCGAGGTCTGGAGCGGACCATGCTTCCAGTGGT‑GCCCCGGGAACTGAATGCTTCCCTTACCGCTGGTCATTCCgcc < 1:415047/251‑3 (MQ=255) gATTGGTGCTACGTCCGAGATTGTCATCAAGAGCCAGCGCCCCTGCGACATCATTAAGTAGCTCGGTACGCGTTTTATAGTGCTTATGCAGTGTCCGGTAGTGCCAGACCGGCGTTGCACACGGCGGCGTCTGCTGTTGTGAAAGATATGCGCGATGCCGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGT‑GCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCCTTCGCGCCAGt > 1:431145/1‑250 (MQ=255) cGTCCGAGTTTGTCATCAAGAGCCAGCGCCCCTGCGACATCATTCAGTAGTTCGGTACTCGTTTTATCGTGCTGATGCCGTGTCAGGTCGTGCCAGACCTGCGTTGCAAACGGCGTCGTCTGCTGTTGTGCAAGATCGGCGCGATGCCGCGCGCGTTTTGTTGCGGACCATGCTTCCAGTGGT‑GCCCCGCGACCTGAATGCTTCCCTTACCGCTGTTCATTCCGGCCATTCGCGCCAGtcagttcctctt > 1:75143/1‑239 (MQ=255) nccGAGTTTGTCATCAAGAGCCAGCGCCCCTGCGACATCATTCAGTAGTTCGGTACGCGTTTTATCGTGCTGATGCAGTGTCAGGTAGTGCCAGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGG‑GCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTAATCTTAcc > 1:45862/2‑251 (MQ=255) caAGAGCCAGCGCCCCTGCGACATCATTCAGTAGTTCGGTACGCGTTTTATCGTGCTGATGCAGTGTCAGGTAGTGCCAGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTTGT‑GCCCCGCTAGCTGAATGCTTCCCTTACCGGTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCggn < 1:93419/250‑2 (MQ=255) gagCCAGCGCCCCTGCGACATCATTCAGTAGTTCGGTACGCGTTTTATCGTGCTGATGCAGTGTCAGGTAGTGCCAGACCGTCTTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCAGGCTTCCAGTGGT‑GCCCCGCGAACTTAATGCTTCCCTTACCGCTTGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCcca < 1:397061/251‑1 (MQ=255) cgcCCCTGCGACATCATTCAGTAGTTCGGTACGCGTTTTATCGTGCTGATGCAGTGTCAGGTAGTGCCAGACCGGCGTTGCAAACGGCGGCATCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGT‑GCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGTCAGTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGc < 1:437939/240‑1 (MQ=255) ccccTGCGACATCATTCAGTAGTTCGGTACGCGTTTTATCGTGCTGATGCAGTGTCAGGTAGTGCCAGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTG‑TTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCccac < 1:363027/243‑1 (MQ=255) cccTGCGACATCATTCAGTAGTGCGGTACGCGTTTTATCGTGCTGATGCAGTGTCAGGTAGTGCCAGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATTCTTACAGTGGT‑GCCCCGCGAACTGAATGCTTCCCTTACCGCTGTTCATGCCGGCCAGTCGCGCCAGTAAGCTACTCGTACCCGCGCCATTCGGCCCCACCAGGTGCAg < 1:286269/251‑1 (MQ=255) atcatTCAGTAGTTCGGTACGCGTTTTATCGTGCTGATGCAGTGTCAGGGAGTGCCAGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGGTTTGTTGCGGACCTTGCTTCCAGTGGT‑GCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCAGTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCACCAGGTGCAGGATCTcccn < 1:52864/251‑2 (MQ=255) aTCGTGCTGATGCAGGTTCAGGTGGTGCCAGGCCGGCGTTGCAAGCGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGG‑GCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCTATTCGGCCACACCAGGTGCAGGATCTCCCCAGCCCGAACCTCGCCAGAAAGCggac < 1:425416/250‑3 (MQ=255) tAGTGCCAGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGT‑GCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCACCAgn < 1:279808/188‑2 (MQ=255) tAGTGCCAGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGT‑GCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATNCCGNNNNNTcnn > 2:279808/1‑144 (MQ=255) gTGCCAGTCCGGCGTAGCCAACGGCGGCGTCGTCTGTTGTGAAAGAGAGGCTCGTTGCAGCGCGAGTTTTGTTGCGGACCAGGTTTCCAGTGGTT‑CACGGCGGACTGAATGCGGCCCTTACCGTTGGTCATTCCGGCCATGCGCGCCAGTATGTTACTCTTAcc < 1:433445/164‑1 (MQ=255) gCAAACGGCGGCGTCTGCTGTTGTGGAAGATAGGCGCGATCCAGCGCGAGTTTTGTTGCGGACCCTGCTTCCCGTGGT‑GCCCCGCGAACTGAATGCTTCCCTTACCGCTGGGAATTCCCGCCCTTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCACCAGGGGCAGGATCTCCCCAGCCCGAACCTCGCCAGACAACCGCCCCAGCCGGGTCGAATTCGCCACATCTTGTAACTTCATcacc > 1:407421/1‑250 (MQ=255) cAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGT‑GCCCCGCGAACTGAATGCTTCCCTTAcc < 1:299203/105‑1 (MQ=255) gttgtGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGT‑GCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCACCAGGTGCAGGATCTCCCCAGCCCGAACCTCGCCAGAAAGCGGCCCCAGGCGGGTAGATTCCGCAACATCTTGTAACTGCATCACAAGAGACATTATTTTGcc < 1:357080/249‑1 (MQ=255) gAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCCTGCTTCCAGTGGT‑GACCCGCGAACTGAATGCTTACCTTACCGATGGCCATTCCGGCCATTCGAGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCACCAGGTg > 1:317495/1‑148 (MQ=255) gAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGT‑GCCCCNCTANCTGANTGNTTCCCTTACCGCTGGNCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATNNGNNNCNACCAGGTg < 2:317495/148‑1 (MQ=255) aaaGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGT‑GCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCACCAgg < 1:178221/145‑1 (MQ=255) ggCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGT‑GCCCCGCGCTCTGAATGCCTCCCTTACCGCTGGTAATTCCGGCCATTCGCGCCAGTAACGACCTCTTAcc > 1:70827/1‑116 (MQ=255) cgATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGT‑GCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCACCAGGTGCAGGATCTCCCCAGCCCGAACCTCGCCAGAAAGCGGCCCCAGGCGGGTAGATTCCGCAACATCTTGTAACTGCATCACAATAGACATTATTTTNc < 1:347978/231‑1 (MQ=255) cgATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGT‑GCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCACCAGGTGCAGGATCTCCCCAGCCCGAACCTCGCCAGAAAGCGGCCCCAGGCGGGTAGATTCCGCAACATCTTGTAACTGCATCACAATAGACATTATTTTGCCAAAGCCAGTTTAATACttt > 1:169825/1‑251 (MQ=255) cgATGCAGCGCGAGCTTTGTTGCGGACCATGCTTCCAGTGGT‑GCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGATACTCTTACCCGCGCCATTCGGCCCCACCAGGTGCAGGATCTCCCCAGCCCGAACCTCGCCAGAAAGCGGCCCCAGGCGGGTAGa > 1:375707/1‑187 (MQ=255) cGGACCATGCTTCCAGTGGT‑GCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCACCAGGTGCAGGATCTCCCCAGCCCGAACCGCGCCAGAAAGCGGCCCCAGGCGGGTAGATTCCGCAACATCTTGTAACTGCATCACAATAGACATTATTTTGCCAACGCCAGTTTAATGCTTTCCATCACAATGGGATCTTCCgn < 1:90825/251‑2 (MQ=255) ggACCNNGCNNNCANNGGT‑GCCCCGAGAACTGAATGCTTNCCTTCCCGCTGGTCATTCCGGCCCTTCGCNCNANTAAGNNACTNTTACCTGCGCNATTCGGCCCCACCAgg > 2:322573/1‑111 (MQ=255) ggACCATGCTTCCAGTGGT‑GCCCCGCGAACTGAATGCTTCCCTTACCGCTGTTCATTCCGGCCATTCGCGCCAGTAAGGTACTCGTACCCGCGCCATTCGGCCCCACCAgg < 1:322573/111‑1 (MQ=255) tCCAGTGGT‑GCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCACCAGGTGCAGGATCTCCCCAGCCCGAACCTCGCCAGAAAGCGGCCCCAGGCGGGTAGATTCCGCAACATCTTGTAACTGCATCACAATAGACATTATTTTGCCAACGCCAGTTTAATGCTTTCCATCACAATGGGATCTTCCGGCGTCATATc < 1:356995/249‑1 (MQ=255) ggtGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCNNCCAGGtnn > 2:12734/3‑96 (MQ=255) tGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGGAAGGTACTCTTACCCGCGCCATTCGGCCCCACCAGGTGCAGGATCTCCCCAGCCCGAACCTCGCCAGAAAGCGGCCCCAGGCGGGTAGATTCCGCAACATCTTGTAACTGCATCACAATAGACATTATTTTGCCAACGCCAGTTTAATGCTTTCCATCACAATGGGATCTTCCg < 1:66441/231‑1 (MQ=255) | ACCGCCGGAAAGTTGATTGGTGCTACGTCCGAGTTTGTCATCAAGAGCCAGCGCCCCTGCGACATCATTCAGTAGTTCGGTACGCGTTTTATCGTGCTGATGCAGTGTCAGGTAGTGCCAGACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCACCAGGTGCAGGATCTCCCCAGCCCGAACCTCGCCAGAAAGCGGCCCCAGGCGGGTAGATTCCGCAACATCTTGTAACTGCATCACAATAGACATTATTTTGCCAACGCCAGTTTAATGCTTTCCATCACAATGGGATCTTCCGGCGTCATATC > NC_000913/1793169‑1793617 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |