| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 2,406,780 | IS1 (–) +8 bp | intergenic (‑139/‑774) | lrhA ← / → alaA | DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1978503 = | NA (NA) | 10 (0.800) | 8/308 | 0.3 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 2406787 | 0 (0.000) | intergenic (‑146/‑774) | lrhA/alaA | DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA | |||||
| * | ? | NC_000913 | = 1979270 | NA (NA) | 19 (1.510) | 15/310 | 0.0 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 2406780 = | 0 (0.000) | intergenic (‑139/‑781) | lrhA/alaA | DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA | |||||
CGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACCAACAGCAATGGTGAGGCGGCATCAAGAGCAGGGATCCGTCATTTATCCGAGCAT > NC_000913/2406551‑2407020 | atcaatgattttctggtgcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccacgggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTc < 1:141805‑M2/22‑1 (MQ=255) cagcaAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaactt < 1:152502‑M2/251‑18 (MQ=255) cGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAAGTCCATTTGTAATGTGCCGCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAAGGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgt > 1:120662‑M2/1‑216 (MQ=255) agaagcggtgtaattgaactgcagttgccttgttttacggcagtgagagcagagatagcgctgttggccggcggtgcttttgccgtttcgcaccaccccgtccgtagcttaacagtatggacatctgatataaacagaagccacttgagctcctcaaaaacaccatcatattctaaatcagtaagttggcagcagcaccAAAAAAGCGCCTCACATTGTTCCGTTATAATGCCTTAAGTAGATCACAGAat < 1:284918‑M2/52‑1 (MQ=255) cagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggtggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCatat > 1:66877‑M2/179‑251 (MQ=255) ccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgtcgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCg < 1:42984‑M2/24‑1 (MQ=255) nggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTactcac > 1:27875‑M2/163‑251 (MQ=255) gagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaaccggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCg > 1:228880‑M2/154‑221 (MQ=255) ggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactgcagcacctaaaaaacaccatcataaactaaatcagtaagttggcagcatcacaAAAAAAACGAATCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGtata > 1:249405‑M2/128‑250 (MQ=255) ggcggaTCATACTGAGCTGGTTCATGCAGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgccagcgacttccgtcccagccgtgccaggtgctg < 1:231991‑M2/251‑121 (MQ=255) ncgttacgcaccaccccgtcagtagctgaacaggagggaaagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATaaatgtaaatgt > 1:29207‑M2/118‑251 (MQ=255) accccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAGAAATGTAAATGTGAGTCCTTGTTc < 1:89753‑M2/146‑1 (MQ=255) ccccgtcagtagccgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttgtcagcatcaccAAAAAAGCGACTCACATTTTTCCGTTATAATGCCTGAAGTAGATCACAGAATAGATCTTCAGGGTGCGCAGATCTATTAAGTGACTCTCTCTTTGCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTcc < 1:189735‑M2/147‑1 (MQ=255) ctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaaggtggcagcatcaccAAAAAAGCGACGCGCATTGGTCCTTTATAATGCCTGAAGTATATCTCAGAATAGATCATCAGGGAGCGCAGATCTATGAAGTTACGCACTCGTTTCTATTTAGGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGt < 1:131707‑M2/144‑1 (MQ=255) gacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacacgaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATGAAGTTACTCACTCTTTTCTATTTATGACATGCGCGGGTTTGTATAAAGGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCa < 1:164750‑M2/171‑1 (MQ=255) nagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAg > 1:179064‑M2/79‑117 (MQ=255) cagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAg < 2:179064‑M2/39‑1 (MQ=255) gaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcataaccAAAAAAGCGCCTCACATTGTTCCGTTCTAATGCCTGAAGTAGCTCACAGAATATCTCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAac > 1:194648‑M2/64‑243 (MQ=255) ccTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgnnagtgtt < 2:13399‑M2/96‑30 (MQ=255) gagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGAc > 1:90761‑M2/54‑159 (MQ=255) gCAGTTTCATCCGGAACCCGTACTAAAGTAAAAATGCATATTAGGTGCACTAAAAAAGCggtaacgaccccaacttattgatagtgtgttattttcatattatgcacgatgacttggtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagc > 1:282575‑M2/1‑59 (MQ=255) tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATGTATTAAGTTACTCACTCTTTTCTATGGATGACATg < 1:239112‑M2/109‑1 (MQ=255) aaCCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttagtgatagtgttttatgttcagataatgcccgatgactgtgtcatgcagcgccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcagg > 1:131596‑M2/1‑45 (MQ=255) aaaaaTGCATATGAGTTGCACTAAAAAAGCggtaatnactccnantnnttnntagtgttt > 2:187356‑M2/1‑30 (MQ=255) cagtaagttggcagcatcaacAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACCAACAGCACTGGTGAGGCGGCATCAAGAGCAGGGATCCTTCAtt > 1:220990‑M2/22‑251 (MQ=255) caaatgagTTGCACTAAAAAAGCggtaatgactccnactnattgntantgttttatgttcaganaatgcccgatgactttgtcatgcagctccaccgattttgagaacnncnnngncttccgtc > 2:199617‑M2/4‑23 (MQ=255) caaatgagTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtc < 1:199617‑M2/121‑102 (MQ=255) nagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGAAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACCAACAGCAATGGTGAGGCGGCATCAAGAGCAGGGATCCGTCATTTATCCGAGCAt > 1:28791‑M2/11‑251 (MQ=255) nacTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgc < 1:232664‑M2/178‑168 (MQ=255) | CGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACCAACAGCAATGGTGAGGCGGCATCAAGAGCAGGGATCCGTCATTTATCCGAGCAT > NC_000913/2406551‑2407020 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |