New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1299499 =	NA (NA)	17 (1.460)	14/286	0.0	100%	noncoding (1/1195 nt)	IS5	repeat region
	?	NC_000913	1300694 =	0 (0.000)					intergenic (+147/‑488)	insH21/oppA	IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein

AAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGTCAATAAAAGAGAATTGCTTAACAATTTTGCAAAATGTATTGGCGAGTAAGAACCGCATTTGGTACTTTCCGGGCAA  >  NC_000913/1300459‑1300916                                                                                                                                                                                                                                            |                                                                                                                                                                                                                               ngataaggtcgccggccattaccagccttggggtaaaacggctcgatgacttccacaatgatttgccatcgccgaatctgatcaatgagggacaagaaaatctattttctggtctgaaggcgcttactgctgacttacctgtcagcgcaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAAt                                                                                                                                                                                                                 >  1:32823‑M2/236‑251 (MQ=255)      aggtcgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATc                                                                                                                                                                                                                    <  1:20644‑M2/13‑1 (MQ=255)                ccattaccagcattggggtaaatcggctcgatgacttccaccatgttttgccatggcagaatctgcgccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgcggaattcactggcggcgaagggaagttgatgactcatgatgaaccctgttctatggctccagatgtcaaacattatctcatatcagggacgtgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATtgtg                                                                                                                                                                                                  <  1:36176‑M2/31‑1 (MQ=255)                                                                                                        cttttttggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcaggggcttgtgctcaccttccCTAAATAATAATCAAGTGTTAAATGATTGTGCATTTCACTACGGGAACTGTAATCAGAAAGGATAGACATGCTTATCCATCCTTTATTTTAGTGAATTGAAAGATGTTTGTTAAgg                                                                                                             <  1:184755‑M2/116‑1 (MQ=255)                                                                                                                                 gctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATAc                                                                                 >  1:205388‑M2/108‑251 (MQ=255)                                                                                                                                               nggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATttgatt                                                                                                                                    >  1:174715‑M2/94‑186 (MQ=255)                                                                                                                                                           gttgatgactcatgatgaaccctgatctatggctcccgatgacaaacatgatatcctctcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCa                                                                                                           >  1:236473‑M2/82‑199 (MQ=255)                                                                                                                                                                 gactcatgatgaaccctgttctatggatccagatgccaaacatgatctcatatcagggacttgttcacaccttccCTAAATAATAATCAAGTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGTCAATAAAAGAGAATTGCTTAACAATTTTg                                                 >  1:252847‑M2/76‑251 (MQ=255)                                                                                                                                                                     catgatgaaccctgttctatggctccagctgacaaacatgctctcatatcagcgacttgttcgccccttccCTACATAATCATCCATTGTTAAATTATTGTGCATTTCCCTACTGGAACTGTCATCAGAAAAGATACACATGCTTAGCCAATCTCTCTTTGATTGCCTTGAAAGATATTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGTCAATAAACGAGACTTGCTTAACAAttt                                                   >  1:148918‑M2/72‑245 (MQ=255)                                                                                                                                                                              ccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGAGTGAATTGAAAGAGGTGTGTTAAGGCATTGATGCAAGCTATAGAGTCTGATACGGTCAATAAAAGAGAATTGCTTAACAATTTTGCAAAATGTATTgg                                    <  1:191124‑M2/189‑1 (MQ=255)                                                                                                                                                                                   nnnnnnggnnnnngatnacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATttgatt                                                                                                                                    <  2:174715‑M2/93‑1 (MQ=255)                                                                                                                                                                                         ggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCGATGTGATTGAATTGAAAGATGTTTGTTAAGGGATGGATGGAAGCTATAGATGCTGATAGTGTCAATAAAAGAGAAGTGCTTAACAATTTTGCAAAATGTATTGGCGAGTAAGAAc                         <  1:45400‑M2/200‑1 (MQ=255)                                                                                                                                                                                                  tgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGAATTTCCCTACTGGAACTGTAATCCGATAAGATAGACATGCTTAGCAAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTCTAGATTCTGATACGGTCAATAAAAGAGAATTGCTTAccaattttgcaaaatgtattgttaagaagcagattgcgctg                 >  1:284101‑M2/43‑230 (MQ=255)                                                                                                                                                                                                          atgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATNNGAAaagnn                                                                                                                                                                 >  2:4701‑M2/35‑96 (MQ=255)                                                                                                                                                                                                              tctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGANNAGATAg                                                                                                                                                               >  2:13428‑M2/31‑96 (MQ=255)                                                                                                                                                                                                              tctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGTc                                                                             <  1:13428‑M2/148‑1 (MQ=255)                                                                                                                                                                                                                 catatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGTCAATAAAAGAGAATTGCTTAACAATTTTGCAAAATGTATTGGCGAGTAAGAACCGCATTTGGTACTTTCCGGGCaa  <  1:4701‑M2/223‑1 (MQ=255)                                                                                                                                                                                                                               cntCNNACCTNCCCTAAATAATCATCAATTATTAANTTAGTGTGCATGTCACTACTGGAACTGTAATNANAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATNTTTGTTAAGGNATGNNTGCANGNTNTAGAGTCTGATACGGTCAATAAAAGAGAANTGCTTAACAATTTTGCAAAAGGTNNTGNNNAGNNAGAAc                         <  2:208247/211‑1 (MQ=255)                                                                                                                                                                                                                                           ncTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTa                                                                                                                >  1:179330/2‑114 (MQ=255)                                                                                                                                                                                                                                           ccTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTa                                                                                                                <  2:179330/114‑1 (MQ=255)                                                                                                                                                                                                                                            |                                                                                                                                                                                                                               AAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGTCAATAAAAGAGAATTGCTTAACAATTTTGCAAAATGTATTGGCGAGTAAGAACCGCATTTGGTACTTTCCGGGCAA  >  NC_000913/1300459‑1300916

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.