New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979271 =	0 (0.000)	17 (1.350)	15/310	0.0	100%	intergenic (‑56/‑482)	insA5/uspC	IS1 family protein InsA/universal stress protein C
	?	NC_000913	= 2102947	NA (NA)					pseudogene (443/446 nt)	wbbL	interrupted rhamnosyltransferase WbbL

TCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATC  >  NC_000913/1979032‑1979514                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                    ggataaggtcgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgaaccttccttaaCATAAATg                                                                                                                                                                                                                                              <  1:3249‑M1/8‑1 (MQ=255)                     accagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagtggatgactcatgatgaaccctgttctatggctccagaggacaaacatgatctcatatcggtgacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTggg                                                                                                                                                                                                                      >  1:274608‑M1/220‑251 (MQ=255)                                 gtaaaacggctcgatgacttccaccatggtttgccatggcagaagctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtctgcgaaggtaagttgatgactcatgatgaaccctgttctatgtctccagatgacaaacatgatctcatatcagggacttgtgcgcaccttccttaaCATAAATGTATAAGTCATACTGTTGTTTTGGGTGTATTTCAATc                                                                                                                                                                                                          >  1:252975‑M1/208‑251 (MQ=255)                                                                                           gacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggcgccagatgacaaacattatctcatatcagtgacttgttcgcaccttccttaaCATAAATGTAGAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgc                                                                                                                                                                                        >  1:152669‑M1/150‑211 (MQ=255)                                                                                              aagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTgg                                                                                                                                                                                                                       >  1:80258‑M1/147‑177 (MQ=255)                                                                                                                         ngcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatataagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACttttgt                                                                                                                                                                                                                            <  1:169749‑M1/26‑1 (MQ=255)                                                                                                                          gcnnnnngctnaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagtgacttgttcgcaccttccttaaCATAAATGTATAAGTCATTCttttgt                                                                                                                                                                                                                            >  2:169749‑M1/119‑144 (MQ=255)                                                                                                                                 gctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaaaatgctctaatatcagggtcttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGgt                                                                                                                                                                                                                     <  1:97126‑M1/33‑1 (MQ=255)                                                                                                                                      attcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatcatc                                                                                                     >  1:168761‑M1/107‑251 (MQ=255)                                                                                                                                        tcactgtcggcgaaggtaagttgatgactcatgatgaaccatgttctatggctccagatgccaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAACATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATAATCTg                                                                                                   <  1:131354‑M1/147‑1 (MQ=255)                                                                                                                                             gtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacgtgttcgcaccttccgtaaCATAAATGTATAAGTCATACTTTTGTTTTGGgtg                                                                                                                                                                                                                    >  1:269364‑M1/100‑133 (MQ=255)                                                                                                                                                        taagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATc                                                                                       <  1:12614‑M1/159‑1 (MQ=255)                                                                                                                                                                  actcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGCTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAAt                                                                          <  1:267150‑M1/172‑1 (MQ=255)                                                                                                                                                                             accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCt                                                              <  1:148779‑M1/184‑1 (MQ=255)                                                                                                                                                                                                     caaacatgatctcatatcagggacttgttcgcacctttcttaaCATAAATGTATAAGTCATACTTTTGTTTTggg                                                                                                                                                                                                                      <  1:283791‑M1/32‑1 (MQ=255)                                                                                                                                                                                                                                    caccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGca        <  1:96227‑M1/238‑1 (MQ=255)                                                                                                                                                                                                                                          ncttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATc  <  1:176724‑M1/244‑1 (MQ=255)                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                    TCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATC  >  NC_000913/1979032‑1979514

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.