New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1299498	1 (0.090)	19 (1.630)	18/286	0.0	95.0%	intergenic (+253/‑69)	ychE/insH21	MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator
	?	NC_000913	= 1300693	NA (NA)					noncoding (1195/1195 nt)	IS5	repeat region

ACGGAGCTGCCATGCTCCGTTTACTTCGTCATTATTTTTACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCA  >  NC_000913/1299261‑1299744                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                       aCGGAGCTGCCATGCTCCGTTTACTTCGTCATTATTTTTACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaat                                                                                                                                                                                                                                           >  1:20422‑M1/1‑238 (MQ=255)                                                     gcAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaagaagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttg                                                                                                                                                                                       <  1:137699‑M1/251‑66 (MQ=255)                                                        gTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcattt                                                                                                                                                                                                       >  1:22634‑M1/1‑183 (MQ=255)                                                             caaaagcaaaagGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcat                                                                                                                                                                                                         <  1:96509‑M1/225‑48 (MQ=255)                                                                                                                                  cTTCTCCTCACCCTCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGACATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgcataagcggggaaattcttctcggctgactccgtcatttcatttcttcatgtttgagccgattttttc                                                                                                                                                                          >  1:149597‑M1/1‑109 (MQ=255)                                                                                                                                                 atGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcgggaaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatc                                                                                           <  1:38660‑M1/251‑158 (MQ=255)                                                                                                                                                            nccaCATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctc                                                                                         >  1:29989‑M1/2‑83 (MQ=255)                                                                                                                                                            gCCACNNCANNNTCNNGGGCTTGCTGAAGAATAATTGAANTGATATTATTAATTCCACTGCCTTTGGTANANGNAAGTNNTAANGAAGGTGCGANTAAgcgggg                                                                                                                                                                                                                                   >  2:210643/1‑99 (MQ=255)                                                                                                                                                            gCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGCAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcctttcttcatgtt                                                                                                                                                                                         >  1:294012‑M1/1‑83 (MQ=255)                                                                                                                                                            gCCACATCAGAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTTGTAGAGGAAAGTGCTAAggaaggtgcgaataagcgggg                                                                                                                                                                                                                                   <  1:210643‑M1/104‑22 (MQ=255)                                                                                                                                                             ccACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGACTTTGGAAGAGGACAGGGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactccgtcatttcatttcttcatgtttgagccgattttttc                                                                                                                                                                          >  1:167733‑M1/1‑82 (MQ=255)                                                                                                                                                                 atcatAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatgtcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcg                                                                                                                               <  1:289307‑M1/199‑122 (MQ=255)                                                                                                                                                                   catAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATCATTAATTCCACTGCCTTTGGTAAAGGCATGTGCTAAggaaggtgcgaataagaggggaaattcttctcggctgaatcagtcatttcctttcttcatgtttga                                                                                                                                                                                      >  1:44854‑M1/1‑76 (MQ=255)                                                                                                                                                                            gggCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcgtttcttcatgtttgagccgattttgtctcccgtaaatgccttgaatcagcctatttagaccgtgtcttcgccatttaagtcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtcc                                                                 <  1:203159‑M1/250‑184 (MQ=255)                                                                                                                                                                                  gCTGAAGAATAATTGAACTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTACggcaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccga                                                           >  1:61522‑M1/1‑61 (MQ=255)                                                                                                                                                                                     gaagaaTAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagcc                                                                                                                                                                                   >  1:129187‑M1/1‑58 (MQ=255)                                                                                                                                                                                                                   cACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaatcagcggggacattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtacatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaac                                                        >  1:111665‑M1/1‑28 (MQ=255)                                                                                                                                                                                                                    aCTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtat                                                                           >  1:272140‑M1/1‑27 (MQ=255)                                                                                                                                                                                                                      tGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgaatcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccctttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttggccagcgtg                                         >  1:159307‑M1/1‑25 (MQ=255)                                                                                                                                                                                                                                          gCTAAggaaggtgcgaataagcggggaaatccttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttggtcagcgtgaataacatcgccagttggttatcgtttttcagcaacccc  >  1:20171‑M1/1‑5 (MQ=255)                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                       ACGGAGCTGCCATGCTCCGTTTACTTCGTCATTATTTTTACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCA  >  NC_000913/1299261‑1299744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.