New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012971	1099967 =	48 (0.500)	8 (0.080)	8/590	6.8	14.3%	intergenic (‑247/+164)	ECD_RS05470/ECD_RS05485	IS3‑like element IS3 family transposase/tRNA‑Ser
	?	NC_012971	1426589 =	NA (NA)					pseudogene (12/1965 nt)	tynA	primary‑amine oxidase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCATGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCC‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTT  >  NC_012971/1099674‑1100257                                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                                   gAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCATGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCC‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtc                                                                                                                                                                                                                                                                                               <  1:29668/299‑1 (MQ=255)               gggTTTTTTACTGGTTGATACTGTTTTTTCCATGTTAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCATGACTCGCTTCGCTCGCCCTGCGGGCAACCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCC‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGccc                                                                                                                                                                                                                                                                                  <  2:48824/298‑1 (MQ=255)                ggTTTTTTATTGGTTGATACTGTTTTTGTCATGCGAATTACCTCCTACTGAGGTTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCATGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCC‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGTCGTTGAGGGGGGGATTGACTCGCTTCGCTCGccc                                                                                                                                                                                                                                                                                  <  2:48796/297‑1 (MQ=21)                 gTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCATGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGGGGGAttcgaacccccgatacgttgcc                                                                                                                                                                                                                                                                                >  1:352222/1‑279 (MQ=17)                      ttACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCATGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGGGGGAttcgaacccccgatacgttgccgtatac                                                                                                                                                                                                                                                                          <  1:698881/300‑27 (MQ=17)                               gATACTGTCTTTGTCATGTTAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAGGATCATGGCTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCAGGCGGGGCTGCTCATCCTCCC‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGTGCAGCCCGTTCAc                                                                                                                                                                                                                                                                <  2:134047/300‑1 (MQ=25)                                     gTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCATGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCC‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGTTGACTCGCTTCGATCGCCCTGCGGGCAACCCGCTCCCTGCGtt                                                                                                                                                                                                                                                          >  1:285575/1‑300 (MQ=255)                                     gTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCATGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCC‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGtt                                                                                                                                                                                                                                                          <  1:716764/300‑1 (MQ=255)                                        tttGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCATGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCC‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTCCGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACCCGCTTCACTCGCCCCTTGGGCAGCCCTCTCACTGCGTTccc                                                                                                                                                                                                                                                       >  1:674244/1‑298 (MQ=21)                                           gTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCATGACTCGCTTCGCTCGCACTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGACAGTTGTCGAACCCCGGTCGGGGCTCCTCATCCCCCC‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTATTTCAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTACGTTCATGGt                                                                                                                                                                                                                                                    >  1:218225/1‑300 (MQ=255)                                            tCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCATGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCC‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTc                                                                                                                                                                                                                                                   <  1:578388/300‑1 (MQ=255)                                                  gAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCATGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCC‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCa                                                                                                                                                                                                                                             >  1:598045/1‑300 (MQ=255)                                                    gTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCATGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGCCGAACCCCGGTCGGGGCTTCTCATCCCCCC‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAAc                                                                                                                                                                                                                                           <  2:613444/300‑1 (MQ=255)                                                    atCACCTCTTACTGATACTTTACTCACTTAGCCGCGTATCCACTATTGCTGGTTAAGATCACGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGCCGAACCCCGGTCGGGGCGTCTCATCCCCCC‑GGTGTGTGCAATAGACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAAc                                                                                                                                                                                                                                           <  2:613436/299‑1 (MQ=21)                                                                tgaGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCATGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCC‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGcc                                                                                                                                                                                                                                <  1:731171/299‑1 (MQ=255)                                                                     gTTTACTCACTTAGCCNCGTGTCCACTATTGCTGGGTAAGATCATGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCC‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTNCGTTCACGGTCTGTCCAANTGGCTGTCGCCAGTTGt                                                                                                                                                                                                                          >  1:638853/1‑300 (MQ=255)                                                                                tAGCCGCGTGTCCACTATTGCTGGGTAAGATCATGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCC‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGt                                                                                                                                                                                                               <  1:358358/300‑1 (MQ=255)                                                                                      cgTGTCCACTATTGCTGGGTAAGATCATGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCA‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCATCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGc                                                                                                                                                                                                         >  1:366321/1‑300 (MQ=255)                                                                                         gtCCACTATTGCTGGGTAAGATTATGACTCGCTTCGCTCGCACTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCC‑GGTGTGTGCAATATACGAAACAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGTAGCCAGCTCACTGCGTTCGCGGTCTGTCAAACTGGCTGTCGCCAGCTGTCGACCACCGGTCGGGGCtt                                                                                                                                                                                                       >  2:104429/1‑299 (MQ=18)                                                                                             aCTATTGCTGGGTAAGATCATGACTCGCTTCACTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTTGCTGTCGCCAGTTGTCGAACCCCGGTCTGGGCTTCTCATCCCCCC‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTtctc                                                                                                                                                                                                    <  1:691091/298‑1 (MQ=255)                                                                                                      gggTAAGATCATGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCC‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTAATccccccc                                                                                                                                                                                           >  1:749927/1‑298 (MQ=255)                                                                                                       gttAAGATCATGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCC‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCgg                                                                                                                                                                                         <  1:489758/297‑1 (MQ=255)                                                                                                        gTAAGATCATTACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCTGGGCTTCTCATCCCCCC‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGCCCAACTGGCTGTCGCCAGTTGTAGACCCCCGGTCTGGGCTTCTCATCCCCCCCGgtg                                                                                                                                                                                       <  1:121758/300‑1 (MQ=255)                                                                                                        gTAAGATCATGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCC‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTAGACCCCCGGTCGGGGCTTCTCATCCCCCCCGgtg                                                                                                                                                                                       <  1:122071/300‑1 (MQ=255)                                                                                                                  gACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCC‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAatat                                                                                                                                                                             <  1:93335/300‑1 (MQ=255)                                                                                                                                gcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCC‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGcc                                                                                                                                                               >  1:308718/1‑300 (MQ=255)                                                                                                                                                     cTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCC‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCtttt                                                                                                                                          >  1:479928/1‑300 (MQ=255)                                                                                                                                                         gTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCC‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCtttttttt                                                                                                                                      >  1:466819/1‑300 (MQ=255)                                                                                                                                                         gTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCC‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGACAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCACGGTGTGTGCAATATACGAAAAAAAAGCCAGTACTTTCGTACGAGCtttttttt                                                                                                                                      >  1:686991/1‑300 (MQ=255)                                                                                                                                                                  cTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCC‑GGTGTGTGCAATATACGAAAAAAAAGCACGTACTTTCGTACGAGCTCTTCTTTAAATATGGAGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTNACTGCGTTCACGGTCTGTCGAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGTGGCTTCTCATACACCCCGGTGTGTGCAATATGCGaaaaaa                                                                                                                                                                    >  2:237929/1‑261 (MQ=21)                                                                                                                                                                                gTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCACC‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTCTTTAAATATGGCGGTGAGGGGGGGAtttacccgc                                                                                                                                                                                                                                                                                             >  2:109619/1‑119 (MQ=11)                                                                                                                                                                                  cGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCC‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAAACCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGa                                                                                                                        >  1:458770/1‑289 (MQ=255)                                                                                                                                                                                      aGTTGTCGAACCCCGTTCGTGGCTCCTCATCCCCCC‑GGTGTGTGCAATATACGAAAAAAAATCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCTGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGGGGGATTCGaa                                                                                                          <  1:716477/299‑1 (MQ=255)                                                                                                                                                                                          gTCGAACCCCGGTCGGGGCTTCTCATCCCCCC‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc                                                                                                      >  1:374770/1‑299 (MQ=255)                                                                                                                                                                                                      tttgtgctcctcATCCCCCC‑GTTGTGTGCAATATACTAAAGAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTTACTCTCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTTGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGGGGGATTc                                                                                                             <  2:468197/271‑1 (MQ=21)                                                                                                                                                                                                             ttcgcATCCCCCC‑TGTGGGTGCAAGATACGAAAAACAAGCCCGTAATGTCGTATGAGCTCCGCTTTAAAGATGACGGTGAGGGGGGGATTGACTCGTTGCGCTCGCCCTGCGGGCAACCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACTAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTGTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATacac                                                                                  <  2:292594/296‑1 (MQ=18)                                                                                                                                                                                                                 cATCCCCCC‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACtt                                                                              >  1:314289/1‑300 (MQ=255)                                                                                                                                                                                                                     ccccc‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCa                                                                          >  1:244845/1‑300 (MQ=255)                                                                                                                                                                                                                           ggTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGt                                                                     >  1:38431/1‑300 (MQ=255)                                                                                                                                                                                                                              gtgtgCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCCACTGGCTATCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCACCCCGGTGTGTGCAATATACGa                                                                                                                                                                         >  2:666713/1‑197 (MQ=255)                                                                                                                                                                                                                              gtgtgCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCt                                                                  >  1:658955/1‑300 (MQ=255)                                                                                                                                                                                                                                     atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCTTAAGGGCTTTTTTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCa                                                            >  1:311938/1‑299 (MQ=255)                                                                                                                                                                                                                                                aaaaGCCCGTACTTTCGTACGAGCTCTTCTTGAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGNGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGaca                                                <  1:556763/300‑1 (MQ=255)                                                                                                                                                                                                                                                                    gAGCTCTTCTTTAAATATGGTGGTGAGGGGGAGATTGACTCGCTTCGCTCGCCCTGCGGGCAGTACGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCACCGGTCGGGGCTTCTCATCCCACACGGTGTGTGCAATATACGAAAAAAAAGCCCGTATTTTCGTACGGGCttttttttgca                                                                                                                                   >  2:111086/1‑194 (MQ=17)                                                                                                                                                                                                                                                                    gAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCACCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACCCCCTTTCCCGGCGTGCTCATTCAGCCACTCGGACAACTCAACCAATTGTCGTTcc                            >  2:111102/1‑300 (MQ=18)                                                                                                                                                                                                                                                                     aGCTCTTCTTTAAATANGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGGGGGATTCGAAGCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCNTCAGCCACTCGGACACCTNCCCAAATTGTCGTTCCt                           >  1:643120/1‑300 (MQ=255)                                                                                                                                                                                                                                                                           tcttTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTCAATCTGGCGGTGAGGGGGGGATTCGAACCCCCGa                                                                                                   >  1:614621/1‑222 (MQ=255)                                                                                                                                                                                                                                                                            cgtgtccactattgctgggtaagatcatGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCC‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCt                   >  1:366477/28‑300 (MQ=14)                                                                                                                                                                                                                                                                                  atatGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAAc              >  1:237757/1‑300 (MQ=255)                                                                                                                                                                                                                                                                                      ggCGGTGGGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTTACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATcccc                                                                                                                                                                                              <  2:66129/120‑1 (MQ=255)                                                                                                                                                                                                                                                                                              gggggggATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCACCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTAGTACGGGCTTTTTTTTAAATCTGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAAttt  >  2:653763/1‑300 (MQ=255)                                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                                   GAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCATGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCC‑GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTT  >  NC_012971/1099674‑1100257

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.