| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,818,331 | G→A | intergenic (‑57/+142) | argY ← / ← argV | tRNA‑Arg/tRNA‑Arg |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,818,331 | 0 | G | A | 84.9% | 109.5 / 19.6 | 58 | intergenic (‑57/+142) | argY/argV | tRNA‑Arg/tRNA‑Arg |
| Reads supporting (aligned to +/- strand): ref base G (0/5); major base A (22/23); minor base T (5/3); total (27/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.04e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.94e-01 | |||||||||||
ATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑TTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCG‑GTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑CTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATC‑AAGTAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTGCCTGCGGTTATTACCGCCACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCAAATGGCGGTGAGGCGGGGATTCGAACCCCGGATGCAGCTTTTGACCGCATACTCCCTTAGCA > NC_000913/2818056‑2818612 | atatGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑TTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCG‑GTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑CTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGACGTATC‑AAATAAGAAA‑TGGTGCATCCGggagga > 1:530635/1‑300 (MQ=255)atatGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑TTTATTTTACTGCTGATATTGATACCGCTACCAAAGCAATATCCCGTAAGAGCTGGTGCATCCGGGAGGATTCGAACCCCCGCTCGCTCG‑GTTCGTAGCAGAGTACTCTATCCAGCTGGGCTACGGATTCATCTGGAGG‑CTTGTTTTACTGCAGCTTTTCTGATACCGCTACTAAAGACGTATC‑AAATAAGAGA‑TGGTGCGTCCGggaggc > 2:331265/1‑299 (MQ=18) gggAGGAGTCGAACCTCCGACCACTCGGTTCGTAACCGAATACCCTATCCAGCCGAACTACGGAGGCAGCGGGAAAACTTATTCTACTGCTGATATTGATACCGCTACTAAAGCCATATCAATTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCG‑GTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑CTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGcc < 1:372967/297‑1 (MQ=21) aCCTCCGATCGCGTGGTTCGGAGCCGAGTACTCTATCCAACTGAGCTACAGATGCATCGGGAAA‑TGTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCG‑GTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑CTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATC‑AAATAagag < 2:124028/257‑1 (MQ=25) ttCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑TTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCG‑GTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑CTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTGGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGc < 1:18176/300‑1 (MQ=255) gCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑TTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCG‑GTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑CTTACTTTACTGCAGATTTTTTGCTACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGccc > 2:423862/1‑275 (MQ=255) gCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑TTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCG‑GTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑CTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGccc < 1:423862/275‑1 (MQ=255) gCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑TTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCG‑GTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑CTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGtt > 1:332891/1‑300 (MQ=255) agtgctctATCCAGCGTAGCTACAGATGCATCGGGAAA‑TTTATTTTACGGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGTAGGATTCGAACCTCCGACCGCTCG‑GTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCTTGAAA‑CTTACTTTACTGCGGATTTGTTGATACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTAtcc < 2:429899/296‑1 (MQ=21) aGCTACGGATGCATCGGGAAA‑TTTATTTTACTTTTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGATCACTCG‑GGTCGTAGCCGAGTAGGCTGTCAAGTGGGGCTACGGATGTATAGGGGAA‑CTTGCTTGACTGCGGATTTTTTGATATCGTTACTAAAGCCGTATC‑AAGTAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGc < 2:657645/273‑1 (MQ=21) gCTATGGATGCATCGGGAAA‑TTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCG‑GTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGCAA‑CTTACTTTAATGCAGATTTTTTGATACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCAATGGTGCCTGCGGtt > 1:607090/1‑300 (MQ=255) gCTACGGATGCATCGGGAAA‑TTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCG‑GTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑CTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTGCCTGCGGtt > 1:607076/1‑300 (MQ=255) ggATGCATTGGGGAA‑TTTATTTTACTGCTGATATTAGTACCTCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGTATTCGAACCTCCGACCGCTCT‑TTTCGTAGCCGAGTACTCTATCCAGATGAGCTACGGATGCATCGGGAAA‑CCCACTTTACTGCAGATTTTTCGATACCGCTACTAAAGCCGGAGC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTGCCTGCGGTTATTAc < 2:98672/300‑1 (MQ=18) ttttACTGCTGATATTGATACCTCTACTAAAGCCATATCAAGTAATAGATGGTGCATCCGGGAGGAGTCGAACCTCTGACTGCTCGTGTT‑GTAGTAGAGTGCTCTATCCGGCTGAGCTACGGGGGCAGCGGGAAA‑ACTACCTTACTGCAGATGTTTTGATACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTGCCTGCGGTTATTACCGCCACCTCTTCCATACCt < 1:491817/300‑1 (MQ=18) ttttACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAATAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCG‑GTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑CTTACTTTACTGCAGAGTTGTTGATACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTGCCTGCGGTTATTACCGCCACCTCTTCCATACCt < 1:205211/300‑1 (MQ=255) ttttACTGCCTATATTGATACCGCTACTAAATCCATATCAAGTAAGAGATGGTGCAGCCGGGAGGATTCGAACCTCCGACTGTTTG‑GTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑CTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGc < 2:9219/248‑1 (MQ=18) gatgtggataagaaacagaggttaatgaaGATATGGTGCATCCGGGAGGAGTCGAACCTCCTACCGCTCG‑GTTCTTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑CTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTGCCTGCGGTTATTACCGCCAcc < 2:420094/245‑1 (MQ=17) gctgaaggttacggagaataTGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCG‑GTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑CTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTa > 1:439738/20‑215 (MQ=11) gctgaaggttacggagaataTGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCG‑GTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑CTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTa < 2:439738/196‑1 (MQ=11) tCAAGTAAGAAATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCG‑GTTCTGAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCTGGAAA‑CTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTg < 1:73147/230‑1 (MQ=255) agggaaGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCG‑GTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑CTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCg < 2:644916/158‑1 (MQ=255) aaggaaGAGATGGTGCATCCGGGAGGATTCGAACCTCCTACCGCTCG‑GTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGTAAA‑CTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTGCCTGCGGTTATTACCGCCACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGggag < 2:165853/296‑1 (MQ=255) aaGTAATAGATGTTGCATCCGGTAGGATTCGAACCTCCGACCGCTCG‑GTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACAGATGCACTGGTAAA‑CCTACTTCACTGCAGGTTTTTTGATACCAATACTAAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTGCCTGCGGTTATTACCGCCACATCTTCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGggag < 1:560691/300‑1 (MQ=18) aaGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCG‑GTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑CTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTGCCTGCGGTTATTACCGCCACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGgga > 1:679501/1‑299 (MQ=255) gTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCG‑GTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑CTTACTTTAATGCAGATTTTTTGATACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTGCCTGCGGTTATTACCGCCACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGggagga > 1:661797/1‑300 (MQ=255) gaataTGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCG‑GTTNGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑CTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGTTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTGCCTGCGGTTATTACCGCCACCTCTTCCATAcc < 2:555898/251‑1 (MQ=255) gaataTGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCG‑GTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑CTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGTTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTGCCTGCGGTTATTACCACCACCTCTTCCATAcc > 1:555898/5‑255 (MQ=255) agaTGGTGCATCCTGGAGGATTCGAACCTCCGACCGCTCG‑GTTCGTAGCCGAGTNCTTTATCCAGCTGAGCTACGGATGCATCGGGAAA‑ATTACTTTACGGCAGATTTTTTGATACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTg < 2:213385/221‑1 (MQ=255) aTCCGGGAGGATTCGAACCTCCGACCGCTCG‑GTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑CTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTGCCTGCGGTTATTACCGCCACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGAc > 1:470358/1‑300 (MQ=255) gggAGGATTCGAACCTCCGACCGCTCG‑GTTCGTAGCCGAGGACTCTATCCAGCTGAGCTGCGGATGCATCTGGAAA‑CTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTg < 2:181623/208‑1 (MQ=255) aTTCGAACCTCCGACCGCTCG‑GTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑CTCACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTGCCTGCGGTTATTACCGCCACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCGCGGTTc > 2:483200/1‑300 (MQ=255) g‑gTTCGTAGCCGAGTACTCTATCCAGCTTAGCTACGGATGCATCGGGAAA‑CCTTCTTTACCTCATACTTTTTAATCCCCCGCCTAAAACCTCATC‑AAGTAAGAGA‑TGGTACATCCGGGAGAATTACCCCCCTTTCGTCCCTCCCTCCGGTCCTTTTCTAAACCAACGTTACCCCCCCCGTTGCCTTCGTTCATTACCCCCACCCCTTCCACACCTTCATCCCTAAAATTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATcc < 1:550470/299‑1 (MQ=12) gTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑CTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTGCCTGCGGTTATTACCGCCACCTCTTCCATACCTTCATCGATGCAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCa > 2:439870/1‑299 (MQ=255) gTTCGTAGCCAAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑CTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTGCCTGCGGTTATTACCGCCACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCa > 1:627833/1‑299 (MQ=255) gCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑CTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTGCCTGCGGTTATTACCGCCACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCt > 1:490660/1‑300 (MQ=255) cGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑CTTACTTTCCTGCCGATTTTTTGCTCCCGCTACTAAAGCCGTATC‑AAATAAG‑GAGTGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTCTCCTCCCTGGTGCCTGTGGTTATTACCGCCACCTCTTCCATAc > 2:682470/1‑203 (MQ=18) aCTCTATCCAGCTGAGCTACGGATGCATCGGGAAAACTTATTCTACTGCTGATATT‑‑GATACCGCTACTAAAGCCATATC‑AATTAAGAGA‑TGGTGCATCGGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTGCCTGCGGTTATTACCGCCACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGc < 1:249274/286‑1 (MQ=11) aCTCTATCCAGCTGAGCTACGGATGCATCGGGAAAACTTATTCTACTGCTGATATT‑‑GATACCGCTACTAAAGCCATATC‑AATTAAGAGA‑TGGTGCATCGGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTGCCTGCGGTTATTACCGCCACCTCTTCCATACCTTCATCGATGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGc > 2:249274/1‑286 (MQ=11) aCTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑CTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCAATGGTGCCTGCGGTTATTACCGCCACCTCTTCCCTACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTTGTAGCCGAGTACTCTATCTCGCTGAGCt > 2:16579/1‑293 (MQ=255) tGAGCTGCGGATGCATCTGGAAA‑CTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTg < 2:206785/155‑1 (MQ=255) gCTACGGATGCATCGGGAAAACTTATTCTACTGCTGATATT‑‑GATACCGCTACTAAAGCCATATC‑AATTAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTGCCTGCGGTTATTACCGCCACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAat < 1:463142/207‑1 (MQ=11) gCTACGGATGCATCGGGAAAACTTATTCTACTGCTGATATT‑‑GATACCGCTACTAAAGCCATATC‑AATTAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTGCCTGCGGTTATTACCGCCACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAat > 2:463142/1‑207 (MQ=11) gCTACGGATGCATCGGGAAA‑CTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAANGTTATCCTCCCTGGTGCCTGCGGTTATTACCGCCACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCAAATGGCGGTGa > 2:498323/1‑298 (MQ=255) ggAAA‑CCTACGTTACGGTAGATGTGTTGATACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTGCCTGCGGTTATTACCGCCACCTCTTCCATAc < 1:682477/168‑1 (MQ=17) ttatgttgcgggtgttGATACCGCTACTAAAGCCATATC‑AAGTAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTGCCTGCGGTTATTACCGCCACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAat < 1:463333/168‑1 (MQ=255) agatctcttGATACCGCTACTAAAGCCGTATC‑AAATAATAGA‑TGGTGCATCCTTGAGGATTACTCGTCTTGTGGATCGTTATGAGGGACGGTGCTAAAGCAACGCTATCCACCCGGGTGTAGGCGGTTGTTACTGCTGATTCTGCTATACCTGCATCGTTTAAAGTACGTAGGATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCAAATGGCGGTGAGGCGGGGATTCGAACCCCGGATGCAGCTTTTGAc < 1:90945/292‑1 (MQ=16) ggtattGATACCGCTACTAAAGCCATATC‑AAGTAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTg < 2:206826/112‑1 (MQ=255) gatattGATACCGCTACTAAAGCCATATC‑AATTAAGAGA‑TGGTTCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTGCCTGCGGTTATTACCGCCACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAat > 1:200578/5‑172 (MQ=255) gatattGATACCGCTACTAAAGCCATATC‑AATTAAGAGA‑TGGTTCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTGCCTGCGGTTATTACCGCCACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAat < 2:200578/168‑1 (MQ=255) gatattGATACCGCTACTAAAGCCATATC‑AATTAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTGCCTGCGGTTATTCCCGCCACCTCTTCCATACCTTCATCGCTGAAAGt > 2:253353/5‑163 (MQ=255) tttttGATACCGCTACTAAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTGCCTGCGGTTATTACTGCTGCCTCTTCTATACTTACATCGCTGAAAGTGCTGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGAc < 1:604196/203‑1 (MQ=14) ttGATACTGCTACTAAAGCCATATCGAAGTAAGAGA‑TGGTGCATCCGGGAGGATTACTc < 2:237013/59‑1 (MQ=255) gCTACTAAAGCCGTATC‑AAATAAGAGA‑TGGTACATCCGGGAGTATTACTCGCCTTTCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGTTGCCTGCGGTTATTACCGCCACCTCTGACATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCAAATGGCGGTGAGGCGGGGATTCGAACCCCGGATGCAGCTTTTGACCGCATACTCCCTTAGc < 2:627833/300‑1 (MQ=255) gctaAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTGCCTGCGGTTATTACCGCCACCTCTTCCATACCTTCATCGCTGAAAGTAAGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCAAATGGCGGTGAGGCGGGGATTCGAACCCCGGATGCAGCTTTTGACCGCATACTCCCTTAGCa > 1:663890/2‑298 (MQ=255) actaAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTGCCTGCGGTTATTACCGCCACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGCCCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCCAATGGCGGTGAGGCGGGGATTCGAACCCCGGATGCAGCTTTTGACCGCATACTCCCTTAGCa > 2:170776/1‑298 (MQ=255) actaAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTGCCTGCGGTTATTACCGCCACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCAAATGGCGGTGAGGCGGGGATTCGAACCCCGGATGCAGCTTTTGACCGCATACTCCCTTAGCa > 1:648273/1‑298 (MQ=255) actaAAGCCGTATC‑AAATAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTG‑TGCCTGCGGTTATTACCGCCACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCAAATGGCGGTGAGGCGGGGATTCGAACCCCGGATGCAGCTTTTGACCGCATACTCCCTTAGCa > 1:333064/1‑297 (MQ=255) actaAAGCCATATC‑AATTAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTGCCTGCGGTTATTCCCGCCACATCTTCCCTACCTTCATCGCTGaaggt > 2:560691/1‑145 (MQ=14) | ATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑TTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCG‑GTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAA‑CTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATC‑AAGTAAGAGA‑TGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCTGGTGCCTGCGGTTATTACCGCCACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCAAATGGCGGTGAGGCGGGGATTCGAACCCCGGATGCAGCTTTTGACCGCATACTCCCTTAGCA > NC_000913/2818056‑2818612 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |