| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,883,678 | G→A | P18S (CCA→TCA) | dnaA ← | chromosomal replication initiator protein DnaA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,883,678 | 0 | G | A | 98.5% | 223.4 / ‑5.8 | 67 | P18S (CCA→TCA) | dnaA | chromosomal replication initiator protein DnaA |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (38/28); total (38/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
CGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGCCACCTGTGCAGGGGCCGCGACGTTGCTCGTCACTGCCGCTTGTGGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTGATATTATTAAGGTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGGTAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTG > NC_000913/3883391‑3883971 | cgTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGCCACCTGTGCAGGGGCCGCGACGTTGCTCGTCACTGCCGCTTGTGGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTGATATTATTAAGGTACTTGTCCAGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCt > 1:350472/1‑299 (MQ=255) tGCGGCTGCGTTTGCGCCACCTGTGCAGGGGCCGCGACGTTGCTCGTCACTGCCGCTTGTGGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTANCAGTCCATTGATATTATTAAGGTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACActgc < 2:185706/300‑1 (MQ=255) tGCGCCACCTGTGCAGGGGCCGCGACGTTGCTCGTCACTGCCGCTTGTGGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTGATATTATTAAGGTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCAAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGaa > 2:614690/1‑300 (MQ=255) gcCACCTGTGCAGGGGCCGCGACGTTGCTCGTCACTGCCGCTTGTGGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTGATATTATTAAGGTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAg < 2:291489/299‑1 (MQ=255) cACCTGTGCAGGGGCCGCGACGTTGCTCGTCACTGCCGCTTGTGGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTGATATTATTAAGGTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCATGCAATGGGTGTATCCACATACTGAATTCTGTGGCTGATAACTAATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGa > 2:40473/1‑300 (MQ=255) gtgCAGGGGCCGCGACGTTGCTCGTCACTGCCGCTTGTGGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTGATATTATTAAGGTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGACTTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGaaac > 2:95581/1‑295 (MQ=255) gtgCAGGGGCCGCGACGTTGCTCGTCACTGCCGCTTGTGGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTGATATTATTAAGGTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGacac > 1:147352/1‑298 (MQ=255) gtgCAGGGGCCGCGACGTTGCTCGTCACTGCCGCTTGTGGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTGATATTATTAAGGTACTTGTCCAGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCAAATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCAAAAGCGAAAGTGacac > 2:291381/1‑298 (MQ=255) gtgCAGGGGCCGCGACGTTGCTCGTCACTGCCGCTTGTGGCGTTTGCGTCAACGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTGATATTATTAAGGTACTTGTCCAGTACCCAATCGAGGACAAAAAGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGaca > 1:225584/1‑297 (MQ=255) gtgCAGGGGCCGCGACGTTGCTCGTCAATGCCGCTTGTGGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTGATATTATTAAGGTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGacac > 1:225631/1‑298 (MQ=255) aGGGGCCGCGACGTTGCTCGTCACTGCCGCTTGTGGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTGATATTATTAAGGTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACAcggcgg < 2:584743/299‑1 (MQ=255) gggCCGCTACGTTGCTCGTCACTGCCGCTTGTGGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTGATATTATTAAGGTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACt < 2:117141/300‑1 (MQ=255) ggCCGCGACGTTGCTCGTCACTGCCGCTTGTGGCGTTTGCGTCAACGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTGATATTATTAAGGTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTACCAAAGCGAAAGTGACACGGCGGACTc > 2:1618/1‑300 (MQ=255) ggCCGCGACGTTGCTCGTCACTGCCGCTTGTGGCGTTTGCGTCAACGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTGATATTATTAAGGTACTTGTCCAGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCACAAGCGAAAGTGACACGGCGGACTc > 1:291733/1‑300 (MQ=255) gcgACGTTGCTCGTCACTGCCGCTTGTGGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTGATATTATTAAGGTACTTGTNCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCGGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTcc < 2:199704/297‑1 (MQ=255) tCACTGCCGCTTGTGGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTGATATTATTAAGGTACTTGTCCCGTACCCAATCGAGGAGAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTc > 2:414137/1‑299 (MQ=255) tCACTGCCGCTTGTGGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTGATATTATTAAGGTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTc > 1:237505/1‑299 (MQ=255) ggCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTGATATTATTAAGGTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGc < 2:122554/300‑1 (MQ=255) gCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTGATATTATTAAGGTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGacg < 1:414137/300‑1 (MQ=255) aaCGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTGATATTATTAAGGTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAATTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGaaaa < 1:231445/300‑1 (MQ=255) aGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTGATATTATTAAGGTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGAcc < 2:424977/299‑1 (MQ=255) tcTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTGATATTATTAAGGTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATTATTGTTGACGTACGTCGAAAAGACCCt > 1:26617/2‑300 (MQ=255) gtgGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTGATATTATTAAGGTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCt > 1:469733/1‑300 (MQ=255) ggCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTGATATTATTAAGGTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTTGCTGATACCTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAg < 2:420087/300‑1 (MQ=255) aTCCGCTCCGCAGAAACTGGTTAGCAGTCCATTGATATTATTAAGGTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAggg < 1:480303/299‑1 (MQ=255) gctccgcAGAAACTGGTTAGCAGTCCATTGATATTATTAAGGTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGAc > 1:96253/1‑299 (MQ=255) aGAAACTGGTTAGCAGTCCATTGATATTATTAAGGTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGGGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAATTGACACGGCGGACTCCACTCGAACAAAAGTCGGTAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAAc < 2:172328/300‑1 (MQ=255) aaCTGGTTAGCAGTCCATTGATATTATTAAGGTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTNTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGGCGCACGAACCGc > 2:447242/1‑300 (MQ=255) cTGGTTAGCAGTCCATTGATATTATTAAGGAACTTGTCCCGTACCCACTCGAGGACACAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGACTTCTGTGGCTGATACCTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGa > 2:289765/1‑237 (MQ=255) ggTTAGCAGTCCATTGATATTATTAAGGTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCg > 1:189583/1‑295 (MQ=255) gCAGTCCATTGATATTATTAAGGTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGTGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCgg < 1:312099/300‑1 (MQ=255) aGTCCATTGATATTATTAAGGTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGt < 1:609530/299‑1 (MQ=255) aGTCCATTGATATTATNAAGGTACTTGTCCCGTACNCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACNAACCGCTGTCTGCGGt < 1:518597/299‑1 (MQ=255) gTCCATTGATATTATTAAGGTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTta > 2:139381/1‑300 (MQ=255) ccATTGATATTATTAAGGTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTtata > 1:27153/1‑300 (MQ=255) aTTGATATTATTAATGTGCTTGTCCCGTACCCAATTGAGGACAAAACGGTTTGGCGCGTACAGGTCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCAGCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGTTGACGCACGAACCGCTGTCTGCGGTta < 2:113799/296‑1 (MQ=255) tGATATTATTAAGGTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGcc < 1:592830/300‑1 (MQ=255) tGATATTATTAAGGGACGTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGcc < 2:299229/300‑1 (MQ=255) atatTATTAAGGTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGccc > 1:5331/1‑299 (MQ=255) atatTATTAAGGTACTTGTCCAGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGccc > 1:3720/1‑299 (MQ=255) attaAGGTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATcca > 2:409894/1‑298 (MQ=255) gTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTNTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCt > 1:112435/1‑300 (MQ=255) tACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCATGAACCGCTGTCTGCGGTTCTATGTCCGATCAAGATCCt > 2:203021/1‑299 (MQ=255) gTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTAGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCaaaa > 2:116115/1‑300 (MQ=255) gAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCgg < 1:27466/300‑1 (MQ=255) aaaaCGGTTTGGCACGTACAGGGCCAGCGGGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACGCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGGACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATAGGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCAt < 1:289765/299‑1 (MQ=255) aaaCGGTTTGGCACGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATa > 2:12924/1‑299 (MQ=255) ttGGCGCGTACAGGGCCAGCTTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATAATGAATTCTGTTGCTGATAACTCATCCTGCAATCGGGCAAGACACGGCTGCCAAAGCGAAAGTTACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCGGCTTTAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAAc < 2:277787/300‑1 (MQ=255) ttGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCTTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAAc < 1:89587/300‑1 (MQ=255) ttGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTTGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAAc < 2:579978/300‑1 (MQ=255) ttGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAAc < 1:293088/300‑1 (MQ=255) ggCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCAAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACt > 2:12485/1‑299 (MQ=255) aGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAagag < 1:291381/299‑1 (MQ=255) gggCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAt > 1:39774/1‑300 (MQ=255) gCGTGTTATCGCTCAGNTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACNGCGGATCATAGCCTAAACNGCGCAAGAGAtcttct > 1:507129/1‑299 (MQ=255) tgtTATCGCTCAGTTCCTCCTGCAATGGGCGTATCCACATACTGAATTCTGTTGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAACGCGAAATCGACACGGCGGACTCCACTCGAGCAAAAGGCGATAATGACTAAGGCTGAAACAGTCATGATTGTTGACGTACGTCGAAGAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCAATCAAGATCCTGCAAAACGATCGGGGCCACGGATCATAGCCTAAAc < 2:247918/279‑1 (MQ=255) gCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTcaca > 2:587622/1‑299 (MQ=255) tCAGTTCCGCCTGCAATGGGCGTATTCACATACTGAATTCTTTTGCTGGTAACTCATCCTGCAATAGGGCAAGACACTTCTGCCAGGGCGAAAGTGACACGGCGAACTCCACTCAAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATAATTGTTGACGTACTTTGAAAAGGCCTTGCTTGAGGTTGACGCACGAACCGCTGTTGGCGGTTATATGCCCGATCAAGATCCTGCAAAGCGATCGGGACCGCGGATCATAACCTAAAc < 2:42839/270‑1 (MQ=255) gCAATGGGCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTa > 1:14265/1‑300 (MQ=255) ggCGTATCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTAACAGATTTTCCCGATTTATCcaca > 2:48634/1‑300 (MQ=255) aTCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCAGATTTATCCACAGGACt > 1:70645/1‑300 (MQ=255) tCCACATACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCAGATTTATCCACAGGACtt > 2:587880/1‑300 (MQ=255) cacaTACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGNGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTc > 1:446880/1‑300 (MQ=255) atattaaaTTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAATAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAg < 2:45530/294‑1 (MQ=255) aTACTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCa > 2:555299/1‑299 (MQ=255) aCTGAATTCTGTGGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGaa > 1:167972/1‑300 (MQ=255) tgGCTGATAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAATAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAgtg < 1:95581/300‑1 (MQ=255) | CGTAGAAGGCGCAGCACGTTGCGGCTGCGTTTGCGCCACCTGTGCAGGGGCCGCGACGTTGCTCGTCACTGCCGCTTGTGGCGTTTGCGTCACCGGTTTGGTGCCGACTTCAAAACGCAGCTGTGGGGCATCCGCTCCGCAGAAACTGGTTAGCAGTCCATTGATATTATTAAGGTACTTGTCCCGTACCCAATCGAGGACAAAACGGTTTGGCGCGTACAGGGCCAGCGTGTTATCGCTCAGTTCCGCCTGCAATGGGCGTATCCACATACTGAATTCTGTGGCTGGTAACTCATCCTGCAATCGGGCAAGACACTGCTGCCAAAGCGAAAGTGACACGGCGGACTCCACTCGAACAAAAGTCGATAATGACTAAGGCTGAAACATTCATGATTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGATCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTG > NC_000913/3883391‑3883971 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |