Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_012971 1,100,143 G→A noncoding (76/88 nt) ECD_RS05485 ← tRNA‑Ser

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0129711,100,1430GA96.7% 183.7 / NA 61noncoding (76/88 nt)ECD_RS05485tRNA‑Ser
Reads supporting (aligned to +/- strand):  ref base G (2/0);  new base A (44/15);  total (46/15)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTTAAAAAATCGCGCGTTTATTCAAACTTCAATCAATATGCAGTTTTAATAAGCGAAATCTGCTTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCTTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCACAATGC  >  NC_012971/1099855‑1100437
                                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                                                         
aGTTGTCGAACCCCGGGCGGGGCTCCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTc                                                                                                                                                                                                                                                                                                    <  2:567826/296‑1 (MQ=255)
                        tctcATCCCCCCGGTGTGTGCAATATACGAAAAAAGAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCACCAGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTCCGGGTTTTTTTTTAAATACGGCGGTGAGGGAGGGGTTCGAACCCCCGATCCGTTGACGTATacacac                                                                                                                                                                                                                                                                       >  2:189492/1‑300 (MQ=21)
                        tctcATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATacac                                                                                                                                                                                                                                                                         >  1:242803/1‑299 (MQ=255)
                        tctcATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTAGTACGAGCTCTTCTTTAAATGTAGCGGTGCGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTCCGGGCTTTTTTTTAAATATGGCGGGGAGGGAGAGATTCGCACCCCCGAGACGTTGCCGTacacac                                                                                                                                                                                                                                                                         >  1:242984/1‑299 (MQ=21)
                        tctcATCCCCCAGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGATCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGCCGCCAGTTGTCGAACCCCGGTCGGGACTTCTCATCCCCACCGGTGTGTGCAATATACGAAAAAAAAGCCAGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGGGGGGTTCGAACCCACGATACGTTGCAGtatgccca                                                                                                                                                                                                                                                                        >  1:242563/1‑295 (MQ=21)
                            acccccccGGTGTGTGCAATAGACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGTAGGGATTCGAACCCCCGATACGTTGCCGTATacacac                                                                                                                                                                                                                                                                       <  2:10157/295‑1 (MQ=255)
                            aTCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACttt                                                                                                                                                                                                                                                                    >  1:489337/1‑300 (MQ=255)
                               cccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTATGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCa                                                                                                                                                                                                                                                                 >  1:83128/1‑300 (MQ=255)
                               cccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCATTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTAATCCACCCAGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTAAGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGCACCCCCGATACGTTGCCATATACACACTTTCCa                                                                                                                                                                                                                                                                 >  2:365274/1‑300 (MQ=21)
                               cccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTACATATGGCGGTGAGGGAGGGCTTCGACCCCCCGATACGTTGCCGTATACACACTTTCCa                                                                                                                                                                                                                                                                 >  2:365364/1‑300 (MQ=255)
                               cccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTATTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATCTGTCGGTGAGGGAGGGATTCGAACCCCCGATACTTTGcagt                                                                                                                                                                                                                                                                               >  2:365375/1‑283 (MQ=255)
                                    ggTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGTGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCNGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCg                                                                                                                                                                                                                                                             <  2:581577/299‑1 (MQ=255)
                                    ggTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCg                                                                                                                                                                                                                                                             <  1:216158/299‑1 (MQ=255)
                                     gtgtgtGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGTGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCCGGCGt                                                                                                                                                                                                                                                            >  2:728034/1‑299 (MQ=255)
                                                ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTNGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGcc                                                                                                                                                                                                                                                <  1:178695/300‑1 (MQ=255)
                                                        aaaaaGCCCTGAATTTCTTACAAGCTCTGCTTGAACTATGTCGGTGGGGGGGGGAGTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACTAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGTAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGac                                                                                                                                                                                                                                        <  2:768830/300‑1 (MQ=18)
                                                        aaaaaGCCCGTACTTTCGTACGATCTCTTCTTTACATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGac                                                                                                                                                                                                                                        <  2:768824/300‑1 (MQ=255)
                                                          aaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGGGTGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGCGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGacac                                                                                                                                                                                                                                      <  2:556592/300‑1 (MQ=255)
                                                                                   ttcttTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCt                                                                                                                                                                                                              <  1:329820/299‑1 (MQ=255)
                                                                                    tcttTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCtt                                                                                                                                                                                                             >  1:222751/1‑299 (MQ=255)
                                                                                    tcttTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCtt                                                                                                                                                                                                             >  1:524052/1‑299 (MQ=255)
                                                                                                     gAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTAATCCCACCAGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACTTTGCCGTATACCCACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTaa                                                                                                                                                                                          >  2:418648/1‑299 (MQ=255)
                                                                                                                      gcttcactCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGTTAGGGGCTTCTCATCCCCCCCGGTGTGGGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATTAcc                                                                                                                                                                       <  2:282862/300‑1 (MQ=255)
                                                                                                                                         cAGCCCGCTCACTGCGNTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGGCGCTANATTTAGGGAAATCATGACNCTGAGGTcaacgcaact                                                                                                                                                       >  1:666327/1‑294 (MQ=255)
                                                                                                                                           gCCCGCTCACTGCGTTCACGGTCTGTGCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCAACAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTTa                                                                                                                                                  >  2:765955/1‑300 (MQ=255)
                                                                                                                                               gCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCAACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCGACAAACTTTTTTaaaaa                                                                                                                                              >  1:807502/1‑300 (MQ=255)
                                                                                                                                                cTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTTaaaaaa                                                                                                                                             >  1:525133/1‑300 (MQ=255)
                                                                                                                                                       cGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGTCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCNTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTTAAAAAATcgcgc                                                                                                                                       >  1:591261/1‑299 (MQ=255)
                                                                                                                                                       cGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTCATTTCGGGAAATCATGACCTGAGGTCAACAAACTTTTTTCAAAAATcgcgc                                                                                                                                       >  1:720407/1‑299 (MQ=255)
                                                                                                                                                       cGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCAACAAATTGTCNTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTTAAAAAATcgcgc                                                                                                                                       >  1:590798/1‑299 (MQ=255)
                                                                                                                                                       cGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGTCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCNTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGAACTGAGGTCAAAAAACTTTTTTAAAAAATcgcgc                                                                                                                                       >  1:591273/1‑299 (MQ=255)
                                                                                                                                                         ttCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGATAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTTAAAAAATCGCGCGtt                                                                                                                                    >  1:359766/1‑300 (MQ=255)
                                                                                                                                                                 cTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTTAAAAAATCGCGCGTTTATTCaaa                                                                                                                            >  1:762667/1‑300 (MQ=255)
                                                                                                                                                                 cTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTTAAAAAATCGAGCGTTTATTCaaa                                                                                                                            >  2:786103/1‑300 (MQ=255)
                                                                                                                                                                   gTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGTTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTTCAAAAATCGCGCGTTTATTCCAACt                                                                                                                          >  1:489512/1‑300 (MQ=255)
                                                                                                                                                                               gTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTTAAAAACTCGCGCGTTTATTCAAACTTCAATCAatat                                                                                                               >  2:472826/1‑299 (MQ=255)
                                                                                                                                                                                  gCCAGTTGTCGACCCCCGTTCTGGGATTCTCAGCCCCCCCGATGTGTGCAATATACGAAAAAAGAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGAGTCGAACCCCCGATACGTTGCCGTATACACACTTTCCATGCGTGCTCCTTCATCCATTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTTGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGTTCAACAAACTTTTTTAAAAAATCGCGCGTTTATTCAAACTTCAATCAATATGCAg                                                                                                           <  2:780307/300‑1 (MQ=37)
                                                                                                                                                                                             aCCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTTAAAAAATCGCGCGTTTATTCAAACTTCAATCAATATGCAGTTTTAATAAGc                                                                                                >  1:630107/1‑300 (MQ=255)
                                                                                                                                                                                                    gTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGGTTCGAACCACCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTAAGCCACTCGGACACCTCAAAAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCCAGTTTAGGGAAATCATGAACCGAGGTCAACAAACTTTTTTAAAAAATCGCGCGTTTATTCAAACCTCAATCAATATGCAGTTTTACTAAGCGAAATc                                                                                          >  2:31683/1‑299 (MQ=37)
                                                                                                                                                                                                        gggCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTTAAAAAATCGCGCGTTTATTCAAACTTCAATCAATATGCAGTTTTAATAAGCGAAATCTGCtt                                                                                     >  1:265864/1‑300 (MQ=255)
                                                                                                                                                                                                           cTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTTAAAAAATCGCGCGTTTATTCAAACTTCAATCAATATGCAGTTTTAATAAGCGAAATCTGCttttt                                                                                  >  1:333584/1‑300 (MQ=255)
                                                                                                                                                                                                            ttCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTTAAAAAATCGCGCGTTTATTCAAAATTCAATCAATATGCAGTTTTAATAAGCGAAATCTGCtttttt                                                                                 >  2:725148/1‑300 (MQ=255)
                                                                                                                                                                                                             tctcATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTTAAAAAATCGCGCGTTTATTCAAACTTCAATCAATATGCAGTTTTAATAAGCGAAATCTGCttttttt                                                                                >  1:134239/1‑300 (MQ=255)
                                                                                                                                                                                                              ctcATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTTAAAAAATCGCGCGTTTATTCAAACTTCAATCAATATGCAGTTTTAATAAGCGAAGTCTGCtttttttt                                                                               >  1:43981/1‑300 (MQ=255)
                                                                                                                                                                                                                cATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACCCACTTTCCAGGCGTGCTCCTTAAGCCACTCGGACACCTCCCCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTTAAAAAATCGCGCGTTTATTCAAACTTAAATTAATATGCAGTTTTAATAAACGAAATCTGCTTTTTTTTGc                                                                             >  1:47439/1‑300 (MQ=255)
                                                                                                                                                                                                                   cccccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGNCGTATACACACTTTCCAGGCGTGCTCCTTCAGNCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTTAAAAAATCGCGCGTTTATTCAAACTTCAATCAATATGCAGTTTTAATAAGCGAAATCTGTTTTTTTTTGcccc                                                                          >  2:616342/1‑298 (MQ=255)
                                                                                                                                                                                                                   cccccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGNCGTATACACACTTTCCAGGCGTGCTCCTTCAGNCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTTAAAAAATCGCGCGTTTATTCAAACTTCAATCAATATGCAGTTTTAATAAGCGAAATCTGCTTTTTTTTGc                                                                             >  2:616348/1‑297 (MQ=255)
                                                                                                                                                                                                                     cccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTTAAAAAATCGCGCGTTTATTCAAACTTCAATCAATATGCAGTTTTAATAAGCGAAATCTGCTTTTTTTTGCCAcc                                                                         >  1:328911/1‑299 (MQ=255)
                                                                                                                                                                                                                     cccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCAACAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTTAAAAAATCGCGCGTTTATTCAAACTTCAATCAATATGCAGTTTTAATAAGCGAAATCTGCTTTTTTTTGCCAcc                                                                         >  2:728434/1‑299 (MQ=255)
                                                                                                                                                                                                                     cccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTAACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTTAAAAAATCGCGCGTTTATTCAAACTTCCATCAATATGCAGTTTTAATAAGCGAAATTTGCTTTTTTTTGCCAcc                                                                         >  2:484686/1‑299 (MQ=255)
                                                                                                                                                                                                                          ggTGTGTGTAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTTAAAAAATCGCGCGTTTATTCAAACTTCAATCAATATGCAGTTTTAATAAGCGAAATCTGCTTTTTTTTGCCACCGAacac                                                                   >  2:704020/1‑300 (MQ=255)
                                                                                                                                                                                                                          ggTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCGAAAAACTTTTTTAAAAAATCGCGCGTTTATTCAAACTTAAATCAATATGCAGTTTTAATAAGTGAAAGCTGCTTTTTTTTGCCCCCGACCa                                                                    >  2:703919/1‑299 (MQ=255)
                                                                                                                                                                                                                             gtgtgCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAAAAAACTTTTTTAAAAAACCGCGCGTTTATTCAAACTTCAATCAATATGCAGGTTTAATAAGCGAAATCTGCTTTTTTTTGCCACCGAACACGGa                                                                >  1:439825/1‑300 (MQ=255)
                                                                                                                                                                                                                                    atatACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTTGAACGNGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTTAAAAAATCGCGCGTTTATTCAAACTTCAATCAATATGCAGTTTTAATAAGCGAAATCTGCTTTTTTTTGCCACCGACCACGGATTTGTTa                                                         <  2:591754/300‑1 (MQ=255)
                                                                                                                                                                                                                                      ataCGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTTAAAAAATCGCGCGTTTATTCAAACTTCAATCAATATGCAGTTTTAATAAGCGAAATCTGCTTTTTTTTGCCACCGACCACGGATTTGTTATg                                                       <  2:103014/300‑1 (MQ=255)
                                                                                                                                                                                                                                                  aGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTTAAAAAATCGCGCGTTTATTCAAACTTCAATCAATATGCAGTTTTAATAAGCGAAATCTGCTTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCtttt                                           >  2:751642/1‑300 (MQ=255)
                                                                                                                                                                                                                                                       gTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGATGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTTAAAAAATCGCGCGTTTATTCAAACTTCAATCAATATGCAGTTTTAATAAGCGAAATCTGCTTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCTTTTGTAg                                       <  2:489337/299‑1 (MQ=255)
                                                                                                                                                                                                                                                                tatgtgCTTTTTTTTAAATATGGCGGTGATGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTTAAAAAATCGCGCGTTTATTCAAACTTCAATCAATATGCAGTTTTAATAAGCGAAATCTGCTTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCTTTTGTAGATCATAACGa                             <  2:328911/295‑1 (MQ=255)
                                                                                                                                                                                                                                                                          tttttCAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTTAACAAACTTTTTTAAAAAATCGCGCGTTTATTCAAACTTCGATCAATATGCAGTTTTAATAGGCGAAATCTGCTTTTTTTTGCCAACGAACACGGATTTGTCATGCTGGTGGCCTTTGTAGATCATAACGACAAGTGCGaa                   >  2:107975/1‑300 (MQ=38)
                                                                                                                                                                                                                                                                          tttttAAATATGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCATGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTTAAAAAATCGCGCGTTTATTCAAACTTCAATCAATATGTAGTTTTAATAAGCGAAATCTGCTTTTTTTTGCCAACGACCACGGATTTGTTATGCTGGTGGCTTTTGTAGATCATAACGATAAGTGCGaa                   >  2:108087/1‑300 (MQ=255)
                                                                                                                                                                                                                                                                               acatatGGCGGTGAGGGAGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTTAAAAAATCGCGCGTTTATTCAAACTTCAATCAATGTGCAGTTTTAATAAGCGAAATCTGCTTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCTTTTGTAGATCATAACGATAAGTGTGAATAAAt              >  2:404091/3‑300 (MQ=255)
                                                                                                                                                                                                                                                                                           gagggaggGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCNCCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTTAAAAAATCGCGCGTTTATTCAAACTTCAATCAATATGCAGTTTTAATAAGCGAAATCTGCTTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCTTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCACAATGc  <  1:593787/300‑1 (MQ=255)
                                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                                                         
AGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTTTTTTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAGGTCAACAAACTTTTTTAAAAAATCGCGCGTTTATTCAAACTTCAATCAATATGCAGTTTTAATAAGCGAAATCTGCTTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCTTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCACAATGC  >  NC_012971/1099855‑1100437

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: