mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| JC | 59,092 | (15-bp)2→1 | coding (619‑633/651 nt) | yabP → | putative uncharacterized protein YabP |
| RA | 100,946 | T→C | M61T (ATG→ACG) | murC → | UDP‑N‑acetylmuramate‑‑L‑alanine ligase |
| RA | 175,520 | A→G | T138T (ACA→ACG) | clcA → | chloride:H(+) antiporter ClcA |
| RA | 192,701 | T→C | intergenic (+121/‑171) | pyrH → / → frr | UMP kinase/ribosome‑recycling factor |
| RA | 246,747 | G→T | S12S (TCG→TCT) | yafL → | NlpC/P60 family protein YafL |
| RA | 284,535 | T→G | A445A (GCT→GCG) | yagF → | D‑xylonate dehydratase |
| RA | 313,543 | G→A | intergenic (‑301/‑1748) | ykgR ← / → insE1 | putative membrane protein YkgR/IS3 element protein InsE |
| MC JC | 366,181 | Δ93 bp | coding (33‑125/3075 nt) | lacZ ← | beta‑galactosidase |
| RA | 367,573 | G→A | intergenic (‑63/+14) | lacI ← / ← mhpR | DNA‑binding transcriptional repressor LacI/DNA‑binding transcriptional activator MhpR |
| RA | 480,295 | 2 bp→AA | coding (13‑14/219 nt) | hha ← | hemolysin expression‑modulating protein Hha |
| RA | 497,853 | (C)5→4 | intergenic (+34/‑202) | adk → / → hemH | adenylate kinase/ferrochelatase |
| JC JC | 606,417 | IS4 (–) +12 bp | coding (956‑967/1119 nt) | ybdK ← | putative glutamate‑‑cysteine ligase 2 |
| RA | 632,017 | (G)7→8 | intergenic (+18/‑165) | cstA → / → ybdD | pyruvate transporter CstA/PF04328 family protein YbdD |
| RA | 637,705 | (T)7→8 | intergenic (‑87/+122) | ybdO ← / ← dsbG | putative LysR family DNA‑binding transcriptional regulator YbdO/protein sulfenic acid reductase and chaperone DsbG |
| RA | 647,220 | G→A | A97V (GCT→GTT) | citG ← | triphosphoribosyl‑dephospho‑CoA synthase |
| RA | 655,829 | T→C | H47R (CAC→CGC) | dcuC ← | anaerobic C4‑dicarboxylate transporter DcuC |
| RA | 657,294 | G→A | M1M (ATG→ATA) † | cspE → | transcription antiterminator and regulator of RNA stability CspE |
| RA | 696,470 | C→T | noncoding (35/75 nt) | glnX ← | tRNA‑Gln |
| RA | 697,144 | (T)8→7 | intergenic (‑11/+369) | metT ← / ← asnB | tRNA‑Met/asparagine synthetase B |
| RA | 754,452 | G→T | A6E (GCA→GAA) | gltA ← | citrate synthase |
| RA | 770,307 | T→C | V777A (GTG→GCG) | mngB → | alpha‑mannosidase |
| JC JC | 788,785 | IS1 (+) +9 bp | coding (45‑53/1041 nt) | galM ← | galactose‑1‑epimerase |
| RA | 822,692 | T→G | T350P (ACC→CCC) | clsB ← | cardiolipin synthase B |
| RA | 856,914 | A→G | N318D (AAC→GAC) | ybiT → | putative ATP‑binding protein YbiT |
| RA | 868,422 | (C)8→7 | coding (903/1872 nt) | gsiA → | glutathione ABC transporter ATP binding subunit GsiA |
| RA | 927,416 | Δ1 bp | coding (17/705 nt) | aat ← | leucyl/phenylalanyl‑tRNA‑‑protein transferase |
| RA | 951,274 | A→G | *761Q (TAA→CAA) | pflB ← | pyruvate formate‑lyase |
| RA | 1,001,251 | A→C | Q679P (CAA→CCA) | elfC → | putative fimbrial usher protein ElfC |
| RA | 1,002,278 | (G)5→6 | coding (472/1071 nt) | elfG → | putative fimbrial‑like adhesin protein |
| RA | 1,059,179 | A→G | T366A (ACC→GCC) | torC → | cytochrome c menaquinol dehydrogenase TorC |
| RA | 1,069,182 | C→T | G220R (GGA→AGA) | rutG ← | pyrimidine:H(+) symporter |
| RA | 1,076,155 | A→G | F910L (TTC→CTC) | putA ← | fused DNA‑binding transcriptional repressor/proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase PutA |
| RA | 1,105,528 | G→T | E39* (GAA→TAA) | ymdA → | uncharacterized protein YmdA |
| RA | 1,126,796 | Δ2 bp | coding (640‑641/648 nt) | yceH → | DUF480 domain‑containing protein YceH |
| RA | 1,140,055 | T→A | M8K (ATG→AAG) | flgL → | flagellar hook‑filament junction protein 2 |
| RA | 1,148,972 | C→T | Q72* (CAG→TAG) | fabH → | 3‑oxoacyl‑[acyl carrier protein] synthase 3 |
| RA | 1,168,050 | A→G | Q151R (CAG→CGG) | ycfJ → | PF05433 family protein YcfJ |
| RA | 1,169,836 | A→G | L180P (CTG→CCG) | ldtC ← | L,D‑transpeptidase LdtC |
| RA | 1,189,980 | A→G | T156T (ACT→ACC) | phoP ← | DNA‑binding transcriptional dual regulator PhoP |
| RA | 1,238,882 | A→G | T2A (ACC→GCC) | dadX → | alanine racemase 2 |
| RA | 1,277,831 | T→C | intergenic (‑213/‑126) | narX ← / → narK | sensor histidine kinase NarX/nitrate:nitrite antiporter NarK |
| RA | 1,287,040 | G→A | intergenic (+56/+26) | ychS → / ← rttR | putative uncharacterized protein YchS/small RNA RttR |
| RA | 1,291,196 | T→C | W319R (TGG→CGG) | rssB → | regulator of RpoS |
| RA | 1,301,992 | A→T | N271Y (AAT→TAT) | oppA → | oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,303,148 | T→A | Y84K (TAT→AAA) | oppB → | murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppB |
| RA | 1,303,150 | T→A | Y84K (TAT→AAA) | oppB → | murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppB |
| RA | 1,306,736 | T→G | S325A (TCC→GCC) | oppF → | murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppF |
| RA | 1,336,674 | G→A | G282R (GGG→AGG) | acnA → | aconitate hydratase 1 |
| RA | 1,337,394 | A→G | S522G (AGC→GGC) | acnA → | aconitate hydratase 1 |
| RA | 1,339,315 | C→T | intergenic (‑155/‑15) | ribA ← / → pgpB | GTP cyclohydrolase 2/phosphatidylglycerophosphatase B |
| RA | 1,358,859 | T→C | Y110C (TAT→TGT) | puuP ← | putrescine:H(+) symporter PuuP |
| RA | 1,443,229 | C→T | P60L (CCC→CTC) | ydbH → | putative phospholipid transport factor YdbH |
| RA | 1,494,914 | G→T | T53N (ACT→AAT) | ydcI ← | DNA‑binding transcriptional dual regulator YdcI |
| RA | 1,525,172 | C→T | G270D (GGC→GAC) | ansP ← | L‑asparagine transporter |
| RA | 1,547,958 | G→T | M186I (ATG→ATT) | fdnG → | formate dehydrogenase N subunit alpha |
| RA | 1,563,394 | (G)5→4 | coding (2340/2400 nt) | dosP ← | oxygen‑sensing c‑di‑GMP phosphodiesterase DosP |
| RA | 1,567,604 | A→G | V407A (GTG→GCG) | digH ← | divisome localized glycosyl hydrolase |
| JC JC | 1,633,132 | IS5 (+) +4 bp | coding (61‑64/234 nt) | ydfK → | cold shock protein YdfK |
| RA | 1,643,679 | A→T | L209Q (CTG→CAG) | ydfU ← | protein YdfU |
| RA | 1,652,331 | T→C | intergenic (+2346/+397) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| RA | 1,656,954 | G→A | S168S (AGC→AGT) | ynfC ← | PF06788 family lipoprotein YnfC |
| RA | 1,677,320 | T→C | D195G (GAC→GGC) | pntA ← | pyridine nucleotide transhydrogenase subunit alpha |
| RA | 1,726,152 | T→C | S44P (TCC→CCC) | nemR → | DNA‑binding transcriptional repressor NemR |
| RA | 1,819,269 | T→C | N60S (AAC→AGC) | chbR ← | ChbR |
| RA | 1,829,887 | G→A | A293A (GCC→GCT) | astA ← | arginine N‑succinyltransferase |
| RA | 1,834,235 | C→A | D40E (GAC→GAA) | ydjY → | 4Fe‑4S ferredoxin‑type domain‑containing protein YdjY |
| RA | 1,847,424 | T→C | K195K (AAA→AAG) | selD ← | selenide, water dikinase |
| RA | 1,894,839 | T→C | L12P (CTC→CCC) | pabB → | aminodeoxychorismate synthase subunit 1 |
| RA | 1,964,698 | A→T | L118H (CTC→CAC) | flhA ← | flagellar biosynthesis protein FlhA |
| RA | 2,000,613 | C→A | E138* (GAA→TAA) | fliZ ← | DNA‑binding transcriptional regulator FliZ |
| RA | 2,001,675 | C→A | V39L (GTG→TTG) | fliA ← | RNA polymerase sigma factor FliA |
| RA | 2,040,433 | C→A | A319D (GCC→GAC) | msrP → | protein‑L‑methionine sulfoxide reductase catalytic subunit MsrP |
| RA | 2,042,171 | G→A | intergenic (+146/‑197) | zinT → / → yodB | metal‑binding protein ZinT/putative cytochrome b561 YodB |
| RA | 2,044,642 | T→C | intergenic (+18/‑296) | asnT → / → yeeJ | tRNA‑Asn/inverse autotransporter adhesin |
| RA | 2,075,599 | A→G | K274R (AAA→AGA) | yeeR → | inner membrane protein YeeR |
| RA | 2,111,259 | Δ1 bp | coding (718/900 nt) | rfbD ← | dTDP‑4‑dehydrorhamnose reductase |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 2,173,448 | C→T | intergenic (‑575/+834) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| JC JC | 2,174,205 | IS1 (+) +9 bp | intergenic (‑1332/+69) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| JC JC | 2,187,650 | IS1 (–) +9 bp | coding (757‑765/1035 nt) | yehA ← | putative fimbrial adhesin YehA |
| RA | 2,237,235 | C→T | Q173Q (CAG→CAA) | mglC ← | D‑galactose/methyl‑galactoside ABC transporter membrane subunit |
| RA | 2,277,933 | A→G | V102A (GTG→GCG) | yejG ← | protein YejG |
| RA | 2,331,496 | C→A | intergenic (‑1699/+2840) | yfaQ ← / ← yfaT | tandem DUF2300 domain‑containing protein YfaQ/DUF1175 domain‑containing protein YfaT |
| RA | 2,360,846 | (C)5→4 | coding (569/1206 nt) | rhmD ← | L‑rhamnonate dehydratase |
| RA | 2,411,538 | C→T | P184P (CCG→CCA) | hxpA ← | hexitol phosphatase A |
| JC JC | 2,468,298 | IS3 (+) +3 bp | coding (85‑87/921 nt) | yfdH → | bactoprenol glucosyl transferase |
| RA | 2,477,987 | Δ1 bp | coding (141/1338 nt) | dsdX → | D‑serine transporter |
| RA | 2,499,978 | C→T | D436D (GAC→GAT) | pyrS → | sensor histidine kinase PyrS |
| RA | 2,512,963 | T→C | intergenic (‑187/‑79) | ypeD ← / → nupC | protein YpeD/nucleoside:H(+) symporter NupC |
| MC JC | 2,558,699 | Δ6,790 bp | intZ–[eutA] | intZ, yffL, yffM, yffN, yffO, yffP, yffQ, yffR, yffS, [eutA] | |
| RA | 2,587,112 | C→T | A461V (GCA→GTA) | narQ → | sensor histidine kinase NarQ |
| RA | 2,636,695 | C→T | R221H (CGT→CAT) | der ← | 50S ribosomal subunit stability factor |
| RA | 2,636,813 | A→G | F182L (TTT→CTT) | der ← | 50S ribosomal subunit stability factor |
| RA | 2,641,929 | T→A | I306F (ATC→TTC) | rodZ ← | cytoskeleton protein RodZ |
| RA | 2,795,610 | (A)5→4 | coding (1358/1401 nt) | gabP → | 4‑aminobutanoate:H(+) symporter |
| RA | 2,834,224 | C→G | L105V (CTG→GTG) | norW → | NADH:flavorubredoxin reductase |
| RA | 2,857,607 | G→A | R172H (CGC→CAC) | mutS → | DNA mismatch repair protein MutS |
| RA | 2,867,455 | G→A | Q33* (CAG→TAG) | rpoS ← | RNA polymerase sigma factor RpoS |
| RA | 2,877,914 | C→G | intergenic (+296/+655) | iap → / ← cas2 | alkaline phosphatase isozyme conversion protein/CRISPR‑associated endoribonuclease Cas2 |
| RA | 2,915,958 | C→T | S301L (TCA→TTA) | barA → | sensor histidine kinase BarA |
| RA | 2,917,324 | (A)5→4 | coding (2268/2757 nt) | barA → | sensor histidine kinase BarA |
| RA | 2,926,772 | C→A | G155G (GGC→GGA) | ppnN → | nucleotide 5'‑monophosphate nucleosidase |
| RA | 3,067,097 | (T)6→7 | coding (77/897 nt) | ygfI ← | putative DNA‑binding transcriptional regulator YgfI |
| RA | 3,152,494 | G→T | A87S (GCG→TCG) | metC → | cystathionine beta‑lyase/L‑cysteine desulfhydrase/alanine racemase |
| RA | 3,153,055 | G→A | A274T (GCT→ACT) | metC → | cystathionine beta‑lyase/L‑cysteine desulfhydrase/alanine racemase |
| RA | 3,160,200 | T→C | H316R (CAC→CGC) | ygiQ ← | radical SAM superfamily protein YgiQ |
| RA | 3,166,341 | (T)5→4 | coding (1378/1608 nt) | ygiS ← | putative deoxycholate binding periplasmic protein |
| RA | 3,207,549 | Δ1 bp | coding (179/606 nt) | ttdB → | L(+)‑tartrate dehydratase subunit beta |
| RA | 3,218,794 | C→T | V95M (GTG→ATG) | aer ← | aerotaxis receptor |
| RA | 3,219,128 | G→A | intergenic (‑52/‑366) | aer ← / → patA | aerotaxis receptor/putrescine aminotransferase |
| RA | 3,257,679 | +C | coding (332/1332 nt) | cyuP ← | cysteine detoxification protein CyuP |
| RA | 3,266,159 | A→C | C303G (TGT→GGT) | tdcA ← | DNA‑binding transcriptional activator TdcA |
| RA | 3,266,469 | C→A | L199F (TTG→TTT) | tdcA ← | DNA‑binding transcriptional activator TdcA |
| RA | 3,316,056 | A→G | F491L (TTC→CTC) | nusA ← | transcription termination/antitermination protein NusA |
| RA | 3,318,016 | (C)5→4 | intergenic (‑10/+197) | rimP ← / ← metY | ribosome maturation factor RimP/tRNA‑Met |
| RA | 3,329,743 | G→T | D261Y (GAT→TAT) | dacB → | peptidoglycan DD‑endopeptidase DacB |
| RA | 3,350,184 | (C)7→8 | coding (276/654 nt) | elbB ← | low activity glyoxalase ElbB |
| JC JC | 3,350,556 | IS1 (–) +8 bp | intergenic (‑97/‑14) | elbB ← / → arcZ | low activity glyoxalase ElbB/small regulatory RNA ArcZ |
| RA | 3,388,041 | T→G | T50P (ACG→CCG) | aaeB ← | aromatic carboxylic acid efflux pump subunit AaeB |
| JC JC | 3,429,988 | IS3 (–) +3 bp | coding (34‑36/258 nt) | yrdB ← | DUF1488 domain‑containing protein YrdB |
| RA | 3,539,535 | G→A | L717L (CTG→CTA) | yhgF → | putative RNA‑binding protein YhgF |
| RA | 3,560,443 | C→G | intergenic (+577/+179) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,622,299 | G→A | T1036T (ACG→ACA) | rhsB → | rhs element protein RhsB |
| RA | 3,635,603 | G→A | A255T (GCT→ACT) | yhiM → | inner membrane protein YhiM |
| RA | 3,686,620 | T→C | T852A (ACA→GCA) | bcsC ← | cellulose synthase outer membrane channel |
| RA | 3,707,883 | G→A | intergenic (‑178/+733) | dppA ← / ← proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| RA | 3,707,900 | Δ1 bp | intergenic (‑195/+716) | dppA ← / ← proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| RA | 3,707,947 | C→A | intergenic (‑242/+669) | dppA ← / ← proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| RA | 3,725,176 | T→G | E48A (GAG→GCG) | glyQ ← | glycine‑‑tRNA ligase subunit alpha |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,828,830 | T→C | intergenic (‑165/‑115) | gltS ← / → xanP | glutamate:sodium symporter/xanthine:H(+) symporter XanP |
| RA | 3,856,886 | G→A | intergenic (+22/+25) | yidI → / ← yidJ | putative inner membrane protein YidI/putative sulfatase/phosphatase YidJ |
| RA | 3,872,217 | T→C | H261R (CAC→CGC) | dgoD ← | D‑galactonate dehydratase |
| RA | 3,902,329 | (C)5→4 | coding (1373/1413 nt) | bglB ← | 6‑phospho‑beta‑glucosidase B |
| RA | 4,073,736 | A→G | intergenic (‑165/‑3) | yihU ← / → yihV | 3‑sulfolactaldehyde reductase/6‑deoxy‑6‑sulfofructose kinase |
| MC JC | 4,124,266 | Δ103 bp | coding (89‑191/1026 nt) | cytR ← | DNA‑binding transcriptional repressor CytR |
| RA | 4,137,832 | C→A | intergenic (‑175/+100) | yijF ← / ← gldA | DUF1287 domain‑containing protein YijF/L‑1,2‑propanediol dehydrogenase/glycerol dehydrogenase |
| RA | 4,143,377 | C→T | S283L (TCA→TTA) | frwC → | putative PTS enzyme IIC component FrwC |
| RA | 4,193,996 | T→G | D70A (GAT→GCT) | thiE ← | thiamine phosphate synthase |
| RA | 4,212,959 | G→C | intergenic (+13/‑81) | rrlE → / → rrfE | 23S ribosomal RNA/5S ribosomal RNA |
| RA | 4,212,973 | Δ1 bp | intergenic (+27/‑67) | rrlE → / → rrfE | 23S ribosomal RNA/5S ribosomal RNA |
| RA | 4,223,638 | T→C | intergenic (‑10/‑190) | iclR ← / → metH | DNA‑binding transcriptional repressor IclR/cobalamin‑dependent methionine synthase |
| RA | 4,239,328 | T→C | S565S (AGT→AGC) | yjbH → | putative lipoprotein YjbH |
| RA | 4,277,898 | A→G | T144A (ACC→GCC) | soxR → | DNA‑binding transcriptional dual regulator SoxR |
| RA | 4,293,781 | 2 bp→AT | coding (239‑240/597 nt) | nrfG → | putative formate‑dependent nitrite reductase complex subunit NrfG |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,325,644 | C→T | S33N (AGC→AAC) | yjdN ← | PF06983 family protein YjdN |
| RA | 4,392,725 | C→T | intergenic (+67/‑167) | glyY → / → yjeV | tRNA‑Gly/uncharacterized protein YjeV |
| RA | 4,400,254 | C→T | intergenic (+52/‑34) | miaA → / → hfq | tRNA dimethylallyltransferase/RNA‑binding protein Hfq |
| RA | 4,410,053 | (T)9→8 | intergenic (+47/‑80) | rlmB → / → yjfI | 23S rRNA 2'‑O‑ribose G2251 methyltransferase/DUF2170 domain‑containing protein YjfI |
| RA | 4,423,337 | C→T | S164S (TCC→TCT) | ulaE → | L‑ribulose‑5‑phosphate 3‑epimerase UlaE |
| RA | 4,449,586 | G→A | P23S (CCG→TCG) | ppa ← | inorganic pyrophosphatase |
| RA | 4,473,900 | C→T | G52R (GGA→AGA) | bdcA ← | c‑di‑GMP‑binding biofilm dispersal mediator protein |
| RA | 4,475,493 | T→C | F19F (TTT→TTC) | yjgL → | protein YjgL |
| RA | 4,510,238 | T→G | intergenic (+445/+452) | insO → / ← fecE | IS911B regulator fragment/ferric citrate ABC transporter ATP binding subunit |
| RA | 4,514,559 | T→C | S707G (AGT→GGT) | fecA ← | ferric citrate outer membrane transporter |
| RA | 4,532,409 | T→G | intergenic (‑758/+28) | sgcX ← / ← yjhP | putative endoglucanase with Zn‑dependent exopeptidase domain/putative methyltransferase YjhP |
| JC JC | 4,541,967 | IS5 (–) +4 bp | intergenic (+408/‑67) | fimB → / → fimE | Type 1 fimbriae regulatory protein FimB/regulator for fimA |
| RA | 4,546,601 | C→T | I502I (ATC→ATT) | fimD → | type I fimbriae usher protein |
| RA | 4,599,224 | A→G | V73A (GTC→GCC) | opgB ← | phosphoglycerol transferase I |
| RA | 4,614,321 | 2 bp→GT | intergenic (+61/+358) | yjjV → / ← yjjW | putative metal‑dependent hydrolase YjjV/putative glycyl‑radical enzyme activating enzyme YjjW |
| RA | 4,614,343 | G→A | intergenic (+83/+337) | yjjV → / ← yjjW | putative metal‑dependent hydrolase YjjV/putative glycyl‑radical enzyme activating enzyme YjjW |
| RA | 4,614,346 | T→C | intergenic (+86/+334) | yjjV → / ← yjjW | putative metal‑dependent hydrolase YjjV/putative glycyl‑radical enzyme activating enzyme YjjW |
| RA | 4,636,925 | G→C | R77P (CGC→CCC) | creC → | sensory histidine kinase CreC |
| RA | 4,638,240 | G→A | L21L (TTG→TTA) | creD → | putative inner membrane protein CreD |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 226817–226968 | 228819–226988 | 21–2003 | 27 [25] | [25] 26 | [rrlH]–[rrfH] | [rrlH],[rrfH] |
| * | * | ÷ | NC_000913 | 1978503–1979270 | 1979336 | 67–834 | 72 [2] | [0] 76 | insB5–insA5 | insB5,insA5 |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 244134 = | 165 (1.160) | 98 (0.710) | 87/452 | 0.6 | 38.2% | intergenic (+13/‑193) | gmhA/yafJ | D‑sedoheptulose 7‑phosphate isomerase/putative glutamine amidotransferase YafJ |
| ? | NC_000913 | = 377392 | 159 (1.160) | intergenic (+81/+143) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 256107 | 76 (0.530) | 136 (0.990) | 114/454 | 0.2 | 64.7% | coding (131/459 nt) | gpt | xanthine‑guanine phsophoribosyltransferase |
| ? | NC_000913 | 371382 = | 75 (0.540) | coding (144/867 nt) | mhpC | 2‑hydroxy‑6‑ketonona‑2,4‑dienedioate hydrolase | |||||
| * | ? | NC_000913 | 1207790 = | 66 (0.460) | 43 (0.320) | 40/438 | 2.2 | 44.9% | coding (290/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | 1209619 = | 44 (0.330) | intergenic (‑500/‑66) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
| * | ? | NC_000913 | = 1207805 | 63 (0.440) | 97 (0.730) | 86/438 | 0.6 | 65.4% | coding (305/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | = 1209602 | 44 (0.330) | intergenic (‑483/‑83) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
| * | ? | NC_000913 | = 1299498 | 2 (0.010) | 58 (0.410) | 52/462 | 1.7 | 98.3% | intergenic (+253/‑69) | ychE/insH21 | MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1397241 | NA (NA) | 57 (0.530) +59 bp |
53/352 | 1.0 | 97.4% | intergenic (+149/‑124) | insH4/ynaJ | IS5 family transposase and trans‑activator/DUF2534 domain‑containing protein YnaJ |
| ? | NC_000913 | = 1978502 | 2 (0.010) | intergenic (‑305/+16) | flhD/insB5 | DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB | |||||
| * | ? | NC_000913 | 1979337 = | 0 (0.000) | 76 (0.530) | 72/470 | 1.0 | 100% | intergenic (‑122/‑416) | insA5/uspC | IS1 family protein InsA/universal stress protein C |
| ? | NC_000913 | = 2102943 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 3728111 = | 40 (0.280) | 39 (0.280) | 32/460 | 2.9 | 52.6% | coding (1261/1455 nt) | xylB | xylulokinase |
| ? | NC_000913 | = 3728113 | 31 (0.220) | coding (1259/1455 nt) | xylB | xylulokinase | |||||
| * | ? | NC_000913 | 4542682 = | 22 (0.150) | 32 (0.230) | 32/452 | 2.9 | 47.7% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 49 (0.360) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||