Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 3,638,509 IS5 (–) +4 bp coding (868‑871/1500 nt) pitA → metal phosphate:H(+) symporter PitA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2288919 =NA (NA)57 (0.580) 42/586 1.0 100% noncoding (1195/1195 nt) IS5 repeat region
?NC_000913 = 3638512 0 (0.000)coding (871/1500 nt) pitA metal phosphate:H(+) symporter PitA
* ? NC_000913 = 2290113NA (NA)103 (1.060) 62/586 0.2 100% noncoding (1/1195 nt) IS5 repeat region
?NC_000913 3638509 = 0 (0.000)coding (868/1500 nt) pitA metal phosphate:H(+) symporter PitA

GCATCATCAAGCGACAGTTCGGCTTCGTGAAAGCCAGATACAAGGGGTTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2289207‑2288919
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACGGGTACGGGTGATTTCGTAGCCAGTGGCATTCATGTTCACCACGAAGCCTGCTGGCGCGACGCCAATCAATACCAACATAACCAGACCAATGCCTTTCTGACCATCGTTCGCGCCGTGCGAAAACGCCACGCCGATAGCGGAAAGGATCAGCGCAATACGCGTCCAGAACGGCGGCTTTTTCTTGCCGTCTTTCTTTTCACGCTCCGCTGGGGTC  <  NC_000913/3638512‑3638217
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
GCATCATCAAGCGACAGTGCGGCGTCGTGAAAGCCAGATACAAGGGGTGGCGGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGTGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGTAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATC                                                                                                                                                                                                                                                                                                <  2:489833/299‑1
     ATCAAGCGACAGTTCGGCTTCGTGAAAGCCAGATACAAGGGGTTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGNGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCAC                                                                                                                                                                                                                                                                                           <  2:580067/299‑1
                 TTCGGCTTCGTGAAAGCCAGATACAAGGGGTTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCC                                                                                                                                                                                                                                                                                   <  1:736180/295‑1
                     GCTTCGTGAAAGCCAGATACAAGTGTTTGCTGAAACACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGTATAGATCTCACTAAAAACTTGGGATAACGCCTTAAATGGCGAATAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATTAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTAGTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGC                                                                                                                                                                                                                                                                          <  2:68830/300‑1
                     GCTTCGTGAAAGCCAGATACAAGGGGTTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGTTGTCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGTGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGC                                                                                                                                                                                                                                                                          <  2:104367/300‑1
                     GCTTCGTGAAAGCCAGATACAAGGGGTTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGTATAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATTAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGC                                                                                                                                                                                                                                                                          <  2:314470/300‑1
                               AGCCAGATACAAGGGGTTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGAT                                                                                                                                                                                                                                                                <  1:603493/300‑1
                               AGCCAGATACAAGGGGTTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGAAGGAT                                                                                                                                                                                                                                                                <  1:769787/300‑1
                                   AGATACAAGGGGTTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATNACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCT                                                                                                                                                                                                                                                             >  2:631259/1‑299
                                   AGATACAAGGGGTTGCGGAAAAACGATAACCAACTTGCGATGTTATTCACGCTGTCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGGCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCGCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGC                                                                                                                                                                                                                                                              <  1:198268/298‑1
                                     ATACAAGGGGTTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTAGGAGAGATCTCACTAAAAACTGGTGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATCCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCT                                                                                                                                                                                                                                                          >  1:47354/1‑300
                                      TACAAGGGGTTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGNTACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTC                                                                                                                                                                                                                                                         <  1:580694/300‑1
                                      TACAAGGGGTTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGACGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCcc                                                                                                                                                                                                                                                         >  2:404484/1‑298
                                        CAAGGGGTTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCATAACTGATCAGCACTGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAA                                                                                                                                                                                                                                                       >  2:80861/1‑300
                                                            ATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGTGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTG                                                                                                                                                                                                                                   <  1:432492/300‑1
                                                              AACCAACTGGTGATGTTATTCACGCTTTCCAACCTGTTTCGGTCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAGTTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGAT                                                                                                                                                                                                                                 <  2:76340/300‑1
                                                              AACCAACTGGCGATGTTATGCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGTAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGTAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAACCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGAT                                                                                                                                                                                                                                 <  2:76253/300‑1
                                                                CCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTAAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGAT                                                                                                                                                                                                                                 >  2:684556/1‑298
                                                                  accttGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGATAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCTAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGC                                                                                                                                                                                                                              <  2:12812/294‑1
                                                                   attggcgagtTTATTCACGCTGGCCAACCTGTTTCATGCGGACTAAATAATACGTCAGTGGGAGAGATCTCACTAAAAACTTGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGC                                                                                                                                                                                                                              <  2:43651/288‑1
                                                                         GATGTTATTCACGATGGCCAACCTGTTTCGGGCGGACCAAATGATGCGTCAGTTGGATAGATCTCACTAAAAACTGGGGATAACGTCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGAGTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACACGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAACTTCCCCGCTTATTCGCACCTTCCCTAACCGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACGGG                                                                                                                                                                                                                      <  2:140222/300‑1
                                                                          ATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACGGGT                                                                                                                                                                                                                     >  1:11307/1‑300
                                                                           TGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATNAAATGACTGAGTCAGCCGAGAAGAATTTCCCCNCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACGGGTA                                                                                                                                                                                                                    <  2:604601/300‑1
                                                                                TTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACGGGTACGGGT                                                                                                                                                                                                               <  1:653306/300‑1
                                                                                        GGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACGGGTACGGGTGATTTCGT                                                                                                                                                                                                       >  1:89803/1‑300
                                                                                        GGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACGGGTACGGATGATTTCGT                                                                                                                                                                                                       >  2:141034/1‑300
                                                                                                                        GTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCATTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATAAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACGAGTACGGGTGATTTCGTAGCAAGTGGCATTCATGTTCACCACGAAGCCT                                                                                                                                                                       >  2:320036/1‑300
                                                                                                                          CAGTGGGAGAGTTCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACGGGTACGGGTGATTTCGTAGCCAGTGGCATTCATGTTCACCACGAAGCCTGC                                                                                                                                                                     >  1:461469/1‑300
                                                                                                                          CAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGAT                                                                                                                                                                                                                                                                <  2:10203/209‑1
                                                                                                                          CAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGAT                                                                                                                                                                                                                                                                >  1:467630/1‑209
                                                                                                                          CAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGAT                                                                                                                                                                                                                                                                <  2:467630/209‑1
                                                                                                                          CAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCATAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGAT                                                                                                                                                                                                                                                                >  1:10203/1‑209
                                                                                                                              GGGAGAGATCTAACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAGACGGTCTAAATAGGCTGATTAAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTACTCGCACCTTCACTANCTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCACAGTAAGCTTAGACGTTGTTGATGGCATCACGAGTACGGGTGATTTCGTAGCCCGTGGCATTCATACTCACCACGAAGCC                                                                                                                                                                        >  2:244429/1‑293
                                                                                                                               GGAGAGGTCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTCAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCACGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTAGACGTTGTTGATGGCATCACGGGTACGGGTGATTTCGTAGCCAGTGGCATTCATGTTCACCACGAAGCCTGCTGGC                                                                                                                                                                 >  2:362753/1‑299
                                                                                                                                                 ACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACGGGTACGGGTGATTTCGTAGCCAGTGGCATTCATGTTCACCACGAAGCCTGCTGGCGCGACGCCAATCAATACCA                                                                                                                                              >  1:619035/1‑300
                                                                                                                                                         TAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTGAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGTTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACGGGTACGGGTGATTTCGTAGCCAGTGGCATTCATGTTCACCACGAAGCCTGCTGGCGCGACGCCAATCAATACCAACATAACC                                                                                                                                      <  1:84831/300‑1
                                                                                                                                                           ACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACGGGTACGGGTGATTTCGTAGCCAGTGGCATTCATGTTCACCACGAAGCCTGCTGGCGCGACGCCAATCAATACCAACATAACCAG                                                                                                                                    <  1:232376/300‑1
                                                                                                                                                             GCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACGGGTACGGGTGATTTCGTAGCCAGTGGCATTCATGTTCACCACGAAGCCTGCTGGCGCGACGCCAATCAATACCAACATAACCAGAC                                                                                                                                  <  1:706743/300‑1
                                                                                                                                                                TTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACGGGTACGGGTGATTTCGTAGCCAGTGGCATTCATGTTCACCACGAAGCCTGCTGGCGCGACGCCAATCAATACCAACATAACCAGACC                                                                                                                                 <  1:527946/298‑1
                                                                                                                                                                       GCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACGGGTACGGGTGATTTCGTAGCCAGTGGCATTCATGTTCACCACGAAGCATGCTGGCGCGACGCCAATCAATACCAACATAACCAGACCAATGCCTTT                                                                                                                        >  2:686814/1‑300
                                                                                                                                                                             AAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATAGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACGGGTACGGGTGATTTCGTAGCCAGTGGCATTCATGTTCACCACGAAGCCTGCTGGCGCGACGCCAATCAATACCAACATAACCAGACCAATGCCTTTCTGACC                                                                                                                  <  1:3497/300‑1
                                                                                                                                                                                 GGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACGGGTACGGGTGATTTCGTAGCCAGTGGCATTCATGTTCACCACGAAGCCTGCTGGCGCGACGCCAATCAATACCAACATAACCAGACCAATGCCTTTCTGACCATC                                                                                                               >  1:289919/1‑299
                                                                                                                                                                                 GGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCATAACTGATCAGCACCGGTAGCCTGTTTGAGCCGCGCAGGATGCTGCTCCAAGTAAGCTTCGACGTTGTTGATGGCATCACGGGTACGGGTGATTTCGTAGCCAGTGGCATTCATGTTCACCACGAAGCCTGCTGGTGCGACGCCAATCAATACCAACATAACCAGACCAATGCCTTTCTGACCAcc                                                                                                               >  2:45736/1‑297
                                                                                                                                                                                      AAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGGCTGAGTCAGCCGAGGAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTNCGACGTTGTTGATGGCATCACGGGTACGGGTGATTTCGTAGCCAGTGGCATTCATGTTCACCACGAAGCCTGCTGGCGCGACGCCAATCAATACCAACATAAACAGACCAATGCCTCTCTGACCATCGTTCGC                                                                                                         >  2:259828/1‑300
                                                                                                                                                                                      AAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCAAGGGTACGGGTGATTTCGTAGCCAGTGGCATTCATGTTCACCACGAAGCCTGCTGGCGCGACGCCAATCAATACCAACATAACCAGACCAATGCCTTTCTGACCATCGTTCGC                                                                                                         >  1:66151/1‑300
                                                                                                                                                                                        ATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACGGGTACGGGTGATTTCGTAGCCAGTGGCATTCATGTTCACCACGAAGCCTGCTGGCGCGACGCCAATCAATACCAACATAACCAGACCAATGCCTTTCTGACCATCGTTCGCGC                                                                                                       <  1:530961/300‑1
                                                                                                                                                                                        ATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACGGGTACGGGTGATTTCGTAGCCAGTGGCATTCATGTTCACCACGAAGCCTGCTGGCGCGACGCCAATCAATACCAACATAACCAGACCAATGCCTTTCTGACCATCGTTCGCGC                                                                                                       <  2:377206/300‑1
                                                                                                                                                                                            GCTGATTCAAGGTATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATAACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACTGGTACGGGTGATTTCGTAGCCAGTGGCATTCATGTTCACCACTAAGCCTGCTGGCGCGACGCCAATCAATACCAACATAACC                                                                                                                                      <  2:155158/265‑1
                                                                                                                                                                                                        CATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACGGGTACGGGTGATTTCGTAGCCAGTGGCATTCATGTTCACCACGAAGCCTGCTGGCGCGACGCCAATCAATACCAACATAACCAGACCAATGCCTTTCTGACCATCGTTCGCGCCGTGCGAAAACGCCAa                                                                                       >  2:313557/1‑299
                                                                                                                                                                                                                                 AAACATGAAGAAATGANATGACTGAGTCAGCCGAGNAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACGGGTACGGGTGATTTCGTAGCCAGTGGCATTCATGTTCACCACGAAGCCTGCTGGCGCGACGCCAATCAATACCAACATAACCAGACCAATGCCTTTCTGACCATCGTTCGCGCCGTGCGAAAACGCCACGCCGATANCGGAAAGGATCAGCGC                                                               <  1:686943/299‑1
                                                                                                                                                                                                                                  AACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACGGGTACGGGTGATTTCGTAGCCAGTGGCATTCATGTTCACCACGAAGCCTGCTGGCGCGACGCCAATCAATACCAACATAACCAGACCAATGCCTTTCTGACCATTGTTCGCGCCGTGCGAAAACGCCACGCCGATAGCGGAAAGGATCAGCGCAc                                                             >  2:218386/1‑299
                                                                                                                                                                                                                                     ATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACGGGTACGGGTGATTTCGTAGCCAGTGGCATTCATGTTCACCACGAAGCCTGCTGGCGCGACGCCAATCAATACCAACATAACCAGACCAATGCCTTTCTGACCATCGTTCGCGCCGTGCGAAAACGCCACGCCGATAGCGGAAAGGATCAGCGCAATAC                                                          <  1:404484/300‑1
                                                                                                                                                                                                                                          GAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACGGGTACGGGTGATTTCGTAGCCAGTGGCATTCATGTTCACCACGAAGCCTGCTGGCGCGACGCCAATCAATACCAACATAACCAGACCAATGCCTTTCTGACCATCGTTCGCGCCGTGCGAAAACGCCACGCCGATAGCGGAAAGGATCAGCGCAATACGCGTC                                                     >  1:458256/1‑300
                                                                                                                                                                                                                                                                                    ATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACGGGTACGGGTGATTTCGTAGCCAGTGGCATTCATGTTCACCAAGAAGCCTGCTGGCGCGACGCCAATCAATACCAACATAACCAGACCAATGCCTTTCTGACCATCGTTCGCGCCGTGCGAAAACGCCACGCCGATAGCGGAAAGGATCAGCGCAATACGCGTCCAGAACGGCGGCTTTTTCTTGCCGTCTTTCTTTTCACGCTCC           >  2:23285/1‑300
                                                                                                                                                                                                                                                                                    ATTCGCACCTTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACGGGTACGGGTGATTTCGTAGCCAGTGGCATTCATGTTCAACACGAAGCCTGCTGGCGCGACGCAAATCAATACCAACATAACCAGACCAATGCCTTTCTGACCATCGTTCGCGCCGTGCGAAAACGCCACGCCGATAGCGGAAAGGATCAGCGCAATACGCGTCCAGAACGGCGGCTTTTTCTTGCCGTCTTTCTTTTCACGCTCC           >  2:161764/1‑300
                                                                                                                                                                                                                                                                                             TTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACGGGTACGGGTGATTTCGTAGCCAGTGGCATTCATGTTCACCACGAAGCCTGCTGGCGCGACGCCAATCAATACCAACATAACCAGACCAATGCCTTTCTGACCATCGTTCGCGCCGTGCGAAAACGCCACGCCGATAGCGGAAAGGATCAGCGCAATACGCGTCCAGAACGGCGGCTTTTTCTTGCCGTCTTTCTTTTCACGCTCCGCTGGGG    <  1:80861/298‑1
                                                                                                                                                                                                                                                                                             TTCCCTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCAAGGGTACGGGTGATTTCGTAGCCAGTGGCATTCATGTTCACCACGAAGCCTGCTGGCGCGACGCCAATCAATACTAACATAACCAGACCAATGCCTTTCTGACCATCGTTCGCGCCGTGCGAAAATGCCACGCCGATAGCGGAAAGGATCAGCGCAATACGCGTCCAGAACGGCGGCTTTTTCTTGCCGTCTTTCTTTTCACGCTCCGCTGGGGTC  >  2:342990/1‑300
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
GCATCATCAAGCGACAGTTCGGCTTCGTGAAAGCCAGATACAAGGGGTTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2289207‑2288919
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAACTGATCAGCACCGGTAGCCTGTTTGAGCAGCGCAGGATGCTGCTCAAAGTAAGCTTCGACGTTGTTGATGGCATCACGGGTACGGGTGATTTCGTAGCCAGTGGCATTCATGTTCACCACGAAGCCTGCTGGCGCGACGCCAATCAATACCAACATAACCAGACCAATGCCTTTCTGACCATCGTTCGCGCCGTGCGAAAACGCCACGCCGATAGCGGAAAGGATCAGCGCAATACGCGTCCAGAACGGCGGCTTTTTCTTGCCGTCTTTCTTTTCACGCTCCGCTGGGGTC  <  NC_000913/3638512‑3638217

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.