| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,466,438 | 0 | T | G | 31.8% | 98.4 / 41.4 | 63 | pseudogene (1047/2518 nt) | ydbA | putative outer membrane protein, N‑terminal fragment |
| Reads supporting (aligned to +/- strand): ref base T (22/21); new base G (13/7); total (35/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.15e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCAC‑CGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAA > NC_000913/1466149‑1466709 | aGGACTGCGATCTGGATGGCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGAc < 2:304289/299‑1 (MQ=255) ggATGTCAGTGGCGGCGGTCACGGTATTGATGTCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGGGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATg < 2:178644/299‑1 (MQ=255) ggTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCAc > 1:626316/1‑300 (MQ=255) ggTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGTCGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCAGCACCAACTGTGGCACCGAAACCCAGATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGt < 1:555341/297‑1 (MQ=255) aTTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGCCCGACGGCGACAAAGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCAAACAGATTAATGGTGATGAAG‑CAAAGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGAAAGGATTCCAACGGTAAGGAAATCGATGGTAATAACGGGAAAGTGATTCAGGACGGCGACCTGGATGTCAGCGGCGGCGGTCGCAGTATTgct > 2:352211/1‑298 (MQ=14) aTTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATCGACGGCAATAACGGAAAAGTGATTCAGGATGGCGATCTGGGTGTCGGCGGCGGCGGTAACGGTATTGat > 2:140863/1‑300 (MQ=255) ttGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGTTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGata < 1:686347/300‑1 (MQ=255) ttGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGata < 2:626316/300‑1 (MQ=255) ttGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGata < 1:685931/300‑1 (MQ=255) tGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGATGGCGATCTGGCTGTCAGCGGCGGTGGTCACGGTATTGattccaaatacaaca > 1:372476/1‑286 (MQ=11) gACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGTTGATGACG‑CCACGGCAAACAACAACTGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACgg < 1:166729/299‑1 (MQ=255) aCGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCCAATCGACGGTGACAAGACCATCGTCAATAATGAAGGTGAGAGCACCATCACTAACGGTGGCACCGACACGCAAGTTAACGGTGATGACG‑CCGCGGCAAACAACAACGGCAAA‑ACCA‑CTGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAGGGTGATTCAGGAAGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCa > 2:101811/1‑280 (MQ=11) aCGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGGTCGACGGCGCCAAGGCCATCGTCAATAACGACGGCGAGAGCGCCATCACCACCGGTGGCACCTGCACACCGATTACCGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATCGACGGCAATAACGGGAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCCCAGGCGACAGCGAAACGGt > 2:100615/1‑299 (MQ=14) aCGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCGCCATCAACAACGGTGGCACCGGCACGCAGATTAACGGTGATGACG‑ACAAGGCGAACAACAACGGCACA‑AACA‑CCGTTGACGGCAAGGATTCCAACGGTACGGAAATTGCCGGTAATAACGGGGAGGTGATTAAGGACGGCGATCTGGGTGTCAGCGGCGGCGGTCACGGTATTGATATCCACGGCGACAGCGCAACGGt > 2:100507/1‑299 (MQ=11) ggggATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGAt < 1:360316/298‑1 (MQ=255) gTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCGCCGGCACCCAGATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGAt < 1:360312/300‑1 (MQ=255) gTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGGTTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGAt < 1:360322/300‑1 (MQ=255) cAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACG‑CCACGGCAAATAACAACGGCAACCACC‑‑CCGTCTACACCCCTAATCACCCCTGTGCGAGCTTCGACTATAGTGGCGGAAAAGTTATTCAGGACGGCGATATGGATGTAGGCGGCGGAGGTCACGGTATTGATATTAACGGCGACAGCGCAACGGTGGATaataa > 1:189804/1‑294 (MQ=12) cAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCNGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAACGGCGACAGCGCAACGGTGGATAACaa > 1:516217/1‑297 (MQ=255) ccATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGa > 1:125244/1‑300 (MQ=255) gATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCNGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCAC‑CGATc < 2:516217/298‑1 (MQ=255) gATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAACGGCGACAGCGCAAAGGTGGATAAAAAGGGCACCATGACCGTCAA‑CGATcc > 1:21375/1‑299 (MQ=255) gTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGCTATCCCTCCCACCCACGTCGACACCGACAATCAGATTAATATTACTACCG‑CCCCAACCCACCACAACTCCAAA‑CCCC‑CCATTTACGGCAAGGATTCAAATGGTACGGAAATCGACGGTAATAACGGAAAAGTGAGTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCGACGGCGACAGCGCAACGGTGGATAACAAGGGTACCATGACCGT‑ACACGATCCGGAGTCCa > 2:356890/1‑299 (MQ=2) gTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGCTAGCGCCCCCACCCACGTCGAAAAAGACAACCAGATGAAGAGTAAT‑ACGACCCCAACAAACCACAAATGCAAACACC‑‑CCACTGACAGCAAAAACTCCAACGGTAAGGAAATCAACGGTAATAACGGAAAAGTTATTAAGGAAGGAGATCTGGAGGTCAGCGGCGGCGGTAAAGGTATTGACATCAAAGGCGAAAGCGCAACGGTGGATAACAAGGGCAccctgcacagcaccaatccagagtccgt > 2:356853/1‑274 (MQ=255) gTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGTAATAACGGGAAGGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACaa > 2:653831/1‑267 (MQ=255) gTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATc < 1:416593/238‑1 (MQ=14) gTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATc > 2:416593/1‑238 (MQ=14) ccATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTCATGATACTGACG‑CAACGGCAAACAACCACGG‑AAA‑ACCAACCGTTGCATACAAGTATTCCAAAGGTAGGGAAATAAAAGGTAATAACGGAAAAGTGGTTCAGGATGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTCTTGATATCAACGGCGACAGCGCAACGGTGGATAACAAGGGCACCCTGACTGTCGC‑CGATCCGGAGTCCATc > 2:397745/1‑299 (MQ=17) aTGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCAC‑CGATCCGGAGTCCATCgg < 1:101811/299‑1 (MQ=11) tGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACG‑CCACGGGAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCAC‑CGATCCGGAGTCCATCGGTa > 2:692605/1‑300 (MQ=11) ggTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAgc < 2:699776/207‑1 (MQ=11) ggTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAgc > 1:699776/1‑207 (MQ=11) gTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATCACCGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAAccctggcaccatacacgtccccaat > 2:267349/1‑257 (MQ=255) gTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCAACAACGGTGGCACCGGCACCCAGATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAACGGCGACAGCGCAACGGTGGATAAc > 2:622324/1‑257 (MQ=11) gTATCCAGATCGACGGTGACAAGGCCATCGGCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAAc < 1:622324/257‑1 (MQ=11) aGATCGACGTTGACAAGGCCATCGGCAATAACGAAGGCGAGAGCACCATCACCAACTGTGGCACCGGCACCTAGATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGTAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCAC‑CGATCCGGAGTCCATCGGTATCCAGGTTg < 1:377496/300‑1 (MQ=255) aTCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATNGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCAC‑CGATCCGGAGTCCATCGGTATCCAGGTTGAc < 1:137619/300‑1 (MQ=255) cGTCAATAACGAAGGCGAGAGCACCATCAACAACGGTGGCACCGGCACCCAGATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAACGGCGACAGCGCAAAGGTGGATAACAAGGGCACCATGAACGTCAC‑CGATCCGGAGTCCATCGGTATCCAGATTGAAGGCGAACAGGccattattaa > 2:117345/1‑291 (MQ=11) cACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCANCATGACCGTCAC‑CGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCAATCGTCAACAACGAAGGCGAGAGCACCATCACCaa > 2:571579/1‑300 (MQ=255) aCCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCAC‑CGATCCGGAGTCCATCGTTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAAc < 2:125244/300‑1 (MQ=255) cGGTGGCACCGGCACCCAGATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCAC‑CGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGt > 1:583644/1‑298 (MQ=255) cGGTGGCACCGGCACCCAGATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCAC‑CGATCAGGAg < 1:185181/226‑1 (MQ=255) cGGTGGCACCGGCACCCAGATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCAC‑CGATCAGGAg > 2:185181/1‑226 (MQ=255) atttggATTAATGGTGATAATG‑CCACGGTAAACAACAATGGCAAA‑ACCA‑CCGTTGACGGTAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGTCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCAC‑CGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTaac < 2:319483/250‑1 (MQ=14) ggATTAAGGGTGATGATG‑CCACGGTAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTc < 2:191931/124‑1 (MQ=11) gATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCAC‑CGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCAgtttct > 2:687677/1‑244 (MQ=255) gATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCAACGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCAC‑CGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACC‑‑GCGGTTGTTCACACAGAAAGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATCAAc > 1:258114/1‑299 (MQ=18) gATTAAGGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAcc < 2:429440/154‑1 (MQ=255) aTTAATGGTGATGACG‑CCACGGTAAACAACAATGGCAAA‑ACCA‑CCGTTGACGGTAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGata < 1:685844/148‑1 (MQ=255) aTTAAGGGTGATGATG‑CCACAGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCAC‑CGATCCGGAGTCCATCgg < 2:117399/215‑1 (MQ=255) ggTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCAC‑CGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCAATCGTCAACAACGAAGGCGAGAgcacacc > 1:563874/1‑258 (MQ=255) ggTGATAATG‑CCACAGTAAACAACAATGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCAC‑CGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACgg > 1:697028/1‑272 (MQ=255) ggTGATAATG‑CCACAGTAAACAACAATGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCAC‑CGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACgg < 2:697028/272‑1 (MQ=255) gtaaaCAACAATGGCAAA‑ACCA‑CCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCAC‑CGATCCGGAGTCCATAGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAaac > 1:196345/3‑300 (MQ=255) gCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCAA‑CGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCAACAACGGTGGCACCGGCa > 2:178286/1‑268 (MQ=255) ggCAAA‑ACCA‑CCGTTGACGGTAAAGATTCCAACGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCAC‑CGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGAACAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCAACAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCaaa > 1:289282/1‑300 (MQ=255) aaagATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGTTCACGGTATTGATATCACCTGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCAC‑CGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCTGTTGGTAACAACGAAGGCGAGAGCGCCATCACAAAAGGGGACAACGGCACGCGGATGAACGGTGATGATGTCACGGTAAACAACAACGGCAAAACCACCGTTGACGGCAAGGa < 2:196345/296‑1 (MQ=17) gATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCAC‑CGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCACCATCACCAATGGTGGCACCGGCACGCatgttca > 2:136209/1‑236 (MQ=255) gATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCAC‑CGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCGATTGTTAACAACGAAGGCGAGAGCACCATCACCAATGGCGGCACCGGCACTCAGATTAACGGTGATGACGCCACAGCAAACAACAACGGCaaaaaca > 2:275571/1‑277 (MQ=14) gAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCAC‑CGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAgg > 1:636286/1‑185 (MQ=255) gAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCAC‑CGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAgg < 2:636286/185‑1 (MQ=255) aaTCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCAC‑CGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCCCCGTTGACGGCAAGGATTCCACCGGTACGGaaa > 2:244481/1‑296 (MQ=255) aaTCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCAC‑CGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGaaa < 1:244481/296‑1 (MQ=255) | AGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACG‑CCACGGCAAACAACAACGGCAAA‑ACCA‑CCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCAC‑CGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAA > NC_000913/1466149‑1466709 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |