breseq  version 0.39.0   mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	annotation	gene	description
MC JC	257,908	Δ776 bp		insB9–[crl]	insB9, insA9, [crl]
RA	366,254	C→A	E18* (GAA→TAA)	lacZ ←	beta‑galactosidase
JC JC	371,758	IS30 (+) +2 bp	coding (520‑521/867 nt)	mhpC →	2‑hydroxy‑6‑ketonona‑2,4‑dienedioate hydrolase
RA	803,662	C→A	L54I (CTT→ATT)	ybhJ →	putative hydratase YbhJ
MC JC	1,299,499	Δ1,199 bp		insH21	insH21
RA	1,905,761	G→A	G25D (GGT→GAT)	mntP →	Mn(2(+)) exporter
MC JC	1,978,503	Δ776 bp		insB5–insA5	insB5, insA5
RA	2,173,363	Δ2 bp	intergenic (‑490/+918)	gatD ← / ← gatB	galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component
RA	3,560,455	+G	intergenic (+589/+167)	rtcR → / ← glpG	DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG
RA	4,296,381	+GC	intergenic (+587/+55)	gltP → / ← yjcO	glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3423807–3424232	3424508–3424239	8–702	32 [31]	[31] 34	[rrlD]	[rrlD]

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1207790 =	77 (0.800)	53 (0.590)	35/556	1.3	43.0%	coding (290/630 nt)	ycfK	protein StfP
	?	NC_000913	1209619 =	68 (0.750)					intergenic (‑500/‑66)	tfaE/pinE	putative tail fiber assembly protein TfaE/site‑specific DNA recombinase
*	?	NC_000913	= 1207805	78 (0.810)	26 (0.290)	21/556	2.9	26.8%	coding (305/630 nt)	ycfK	protein StfP
	?	NC_000913	= 1209602	68 (0.750)					intergenic (‑483/‑83)	tfaE/pinE	putative tail fiber assembly protein TfaE/site‑specific DNA recombinase