Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,287,0400GA73.2% 95.8 / 28.9 58intergenic (+56/+26)ychS/rttRputative uncharacterized protein YchS/small RNA RttR
Reads supporting (aligned to +/- strand):  ref base G (11/4);  new base A (24/17);  total (36/22)
Fisher's exact test for biased strand distribution p-value = 3.66e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

TTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCAGGGGTA  >  NC_000913/1286745‑1287335
                                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                                         
ttCGCCCTTCGGTTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGTGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGagag                                                                                                                                                                                                                                                                                                       <  1:21005/300‑1 (MQ=255)
ttCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTAagag                                                                                                                                                                                                                                                                                                       <  1:76081/300‑1 (MQ=255)
          gggTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAG‑TTCAGGGAc                                                                                                                                                                                                                                                                                             <  1:56575/299‑1 (MQ=255)
                  gcttgatgtaaCGCTCTCGCGCTGGCGCTCAAATCTAACCTGGGGCGGAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATGTGATGGCGGATTCGTGTGAGAAGTCCGTGGCTTTTGAAATTGATAGTGTTGGGGGAAGGATTACTCAGCGCGGCGCGCTTCGCCCTTCGGGTCGTGGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGTCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGTCAGAATATTTGATTGCGGATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAg                                                                                                                                                                                                                                                                                    <  2:116988/291‑1 (MQ=255)
                         gCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGAtgg                                                                                                                                                                                                                                                                              <  1:742930/299‑1 (MQ=255)
                              gCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCTCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGAtggtggt                                                                                                                                                                                                                                                                          >  1:617687/1‑298 (MQ=255)
                                   ctcGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCCTCCGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGaa                                                                                                                                                                                                                                                                   >  2:689218/1‑300 (MQ=255)
                                            gcTCAAGTCTAACCTTGGTCGAAGCTTCTTCCCCTTCCCCGCTTTGGCAGAATATTTGATTGCTGATTCGTTTGAGAATTCCGGTGCTTGCGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTgggg                                                                                                                                                                                                                                                                      <  1:454114/288‑1 (MQ=17)
                                            gatCAAGTCGAACTTTGGGCGAAGTTTCTCATCCTTACCCGCTGGGGCAGAGTATGGGATTGTTGATTCGTGTGAGAATTTTGGGGCTTGGGGAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGTAAGGATTA‑CTc                                                                                                                                                                                                                                                         <  1:33354/298‑1 (MQ=17)
                                                 aGTCGAACCTTGGTCGANGCTTCTCATCCTTCCCCGNTTGGGCAGAATATTTGATTGCGGATTCGTTGGAGAATTCCGGGGCTTGTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGNAAGGATTA‑CTCAgcgc                                                                                                                                                                                                                                                    <  1:629139/300‑1 (MQ=255)
                                                 aGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAGTTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAgcgc                                                                                                                                                                                                                                                    <  1:15560/300‑1 (MQ=255)
                                                 aGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAgcgc                                                                                                                                                                                                                                                    <  1:697519/300‑1 (MQ=255)
                                                      aacttgggTCGAAGCTTCGCATCCTTCCCCGCGTGGGCAGAATATGTGATTTCGGATTAGTGGGAGAATTCCGGTGTTTTGGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTgcgc                                                                                                                                                                                                                                               <  2:640950/294‑1 (MQ=17)
                                                                                    gCTTGGGTAGAATATTTGATTGCGGATTCGTTTGAGAATGCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGAGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTTGTGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGc                                                                                                                                                                                                                  <  1:690134/299‑1 (MQ=255)
                                                                                               atatTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGCCGAAGCTTCTAATCCTTACCCGAATGGGCAGAATATTTGATTGCGGATTCGCTTCAGGG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCtctctc                                                                                                                                                                                                       >  2:348294/1‑299 (MQ=255)
                                                                                                    tGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTAAAAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTAACCCA‑TGCTGAGCGCTTAGCGCTTAGGGTCTTTGCCTGCGGACCCGCTCTCTCGCTGgc                                                                                                                                                                                                 >  2:173992/1‑300 (MQ=17)
                                                                                                            gATTCGTGGGAGAATTCCGTGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGAtggtgg                                                                                                                                                                                                                                                                           <  2:269073/219‑1 (MQ=255)
                                                                                                                cGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTAGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTAAAAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCCACGCTGCGCGCTTCGCACTCCGGTTCGTTGCCt                                                                                                                                                                                                                       >  2:2144/1‑266 (MQ=17)
                                                                                                                                   ttttGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGTTTCTCACCCTTCCCCGCCTGGGTCGATTATTTACTTGTAAATTCACGCGAGAA‑TTCAGGGATTTTTGAAGGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAAAATTGGTCGAAGCTTCTCa                                                                                                                                                                  >  1:395944/1‑300 (MQ=14)
                                                                                                                                         aagcgATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGAGTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAt                                                                                                                                                                                                                                                               <  2:84213/198‑1 (MQ=255)
                                                                                                                                                ggtggtggttgaataaTTACTCATCGCTGCGCGCTTCGCCCTTCTGGTTGTTGCCGGCGGCAACGCTCTCTCTCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTCATTGCGGATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCAt                                                                                                                                                     <  2:617687/285‑1 (MQ=17)
                                                                                                                                                 gtggtggGTGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGTTCGTTGCCTGCTGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCGCATCCCTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGcc                                                                                                                                                                                                                        <  2:787/232‑1 (MQ=14)
                                                                                                                                                    gtggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTAGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCAt                                                                                                                                                     >  1:64134/1‑296 (MQ=255)
                                                                                                                                                    gtggGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTAGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGc                                                                                                                                                 >  1:471470/1‑300 (MQ=255)
                                                                                                                                                        gggAAGGATTACTCAGCGCTACGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTTACGCTCGAGCCGAACCTTAGTCTAATCTTCTCACCCCCCCCCTCTTGTGCAAAATATTCGATTGCTTATCCACTCCAGGGGTCCTCGGTGGTTTGGA‑GGGATGGAGGAGGGGTAGGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAAcc                                                                                                                                                                                   <  1:595417/262‑1 (MQ=9)
                                                                                                                                                             ggATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGTCTGATGG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGTAAGGATTA‑ACCCGCGCTGCGTGTTTAGCACTTAGGGTCGTTGCATGTGGCAACGATATCTCGATGGCGCTCGAGTTGGAAATTGGCCGAAGCTTCTCATCCtcccacggatgagccgaactttt                                                                                                                                        >  2:61722/1‑278 (MQ=14)
                                                                                                                                                             ggATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTNCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATAttt                                                                                                                                        >  1:548109/1‑300 (MQ=255)
                                                                                                                                                             ggATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTC‑CTCCGtgctgc                                                                                                                                                                                                                                                 >  1:126842/1‑195 (MQ=255)
                                                                                                                                                             ggATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATAttt                                                                                                                                        >  1:225945/1‑300 (MQ=255)
                                                                                                                                                             ggATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGACTCGGTTGAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGCCGTTGCCTGTGTCAACGTTCTCTAGCTTTCGCTCAAATCGCACCTTAGTCGACGGTTCTAACCCTTCCCCgataagtgcacaccttc                                                                                                                                        >  2:516735/1‑284 (MQ=14)
                                                                                                                                                                ttACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAAt                                                                                                                                     >  1:730322/1‑300 (MQ=255)
                                                                                                                                                                  aCTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGTCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGTTGGGGGAAGGATTA‑CTCCGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGTTTCTCATCCTTCCCCGCATGGGCAGAATATTTAAtt                                                                                                                                    >  1:12558/1‑299 (MQ=255)
                                                                                                                                                                  aCTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGAAGAACATTTAAtt                                                                                                                                    >  1:11864/1‑299 (MQ=255)
                                                                                                                                                                       gcgcTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGAt                                                                                                                              >  1:37296/1‑300 (MQ=255)
                                                                                                                                                                                                           gccccGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCCACGCTCTCTCGCTGGCGCTCGAGTAGAACCTTGGTCGCAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGAtggt                                                                                          >  1:489963/5‑300 (MQ=255)
                                                                                                                                                                                                              aCGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGAtggtggt                                                                                       >  1:520437/1‑300 (MQ=255)
                                                                                                                                                                                                              aCGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGAATGGGAAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGAtggtggt                                                                                       >  1:425225/1‑300 (MQ=255)
                                                                                                                                                                                                                     ctcGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTACCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGTTTCTCATCCTTCACATACTGGGAAAAGTATTCAATTGCGGATTCGCTGGGAAGGTCAGGGACGTTTGAAAGTGATGGTGGTgggggga                                                                                >  2:371453/1‑298 (MQ=17)
                                                                                                                                                                                                                             cGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGa                                                                        >  1:445657/1‑300 (MQ=255)
                                                                                                                                                                                                                                   aGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGTGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTc                                                                  >  1:668694/1‑300 (MQ=255)
                                                                                                                                                                                                                                   aGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTAAAAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGAtt                                                                                                                                                                                                                                                              >  1:668703/1‑113 (MQ=255)
                                                                                                                                                                                                                                               gTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTgggg                                                                                   >  1:36141/1‑271 (MQ=255)
                                                                                                                                                                                                                                               gTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGAc                                                      <  1:689218/300‑1 (MQ=255)
                                                                                                                                                                                                                                               gTCGAAGCTCCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTAAGAG‑TTCATGGACTTTTGAAATTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTgggg                                                                                   <  2:36141/271‑1 (MQ=255)
                                                                                                                                                                                                                                                       ttCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCCGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGCAGTCGATGACGGCAGAtt                                              >  1:65646/1‑300 (MQ=255)
                                                                                                                                                                                                                                                       ttCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTAGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGAtt                                              >  2:631235/1‑300 (MQ=255)
                                                                                                                                                                                                                                                       ttCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTAGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTAATCCTTACCCGAATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAATGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGAtt                                              >  2:399040/1‑300 (MQ=255)
                                                                                                                                                                                                                                                               cTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCACCGCTCTCTCGCTGGCGCTCGAGTAGAACCTTGGTCGAAGCTTCTAATCCTTCCCCGCATGGGCAGGACATTTAACTGCGGATTCGTTGGGACGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGCCGATGACGGCAGATTTACATTCt                                      >  2:82955/1‑300 (MQ=18)
                                                                                                                                                                                                                                                               cTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTAGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCACGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAAGATTCAAACCTTCGCAGTCGATGACGGCAGATTTACAGTCt                                      >  2:82947/1‑300 (MQ=255)
                                                                                                                                                                                                                                                                          gggCAGAATATTTGATTGCGGATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCttt                             >  1:711507/1‑298 (MQ=255)
                                                                                                                                                                                                                                                                           ggCAGAATATTTGATTGCGGATTCGCGTAAGAG‑TTCATGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGc                          <  1:290215/300‑1 (MQ=255)
                                                                                                                                                                                                                                                                               gAATATTTGATTGCGGATTCGTTTGAGAA‑TTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGNAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGc                          >  1:151560/1‑296 (MQ=255)
                                                                                                                                                                                                                                                                               gAATATTTGATTGCGGAGTCGTTTGAGAA‑TTCCTGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGc                          <  2:151560/296‑1 (MQ=17)
                                                                                                                                                                                                                                                                                 atatTTGATTGCGGATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTAAGCGCTGCGCGCTTAGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAGGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTc                     >  2:115093/1‑299 (MQ=255)
                                                                                                                                                                                                                                                                                       gATTGCGGATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTTGCCGCTCGGGAAcc              >  1:350774/1‑300 (MQ=255)
                                                                                                                                                                                                                                                                                       gATTGCGGATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAAcc              >  1:350808/1‑300 (MQ=255)
                                                                                                                                                                                                                                                                                              gATTCGCTTAAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCAg       <  1:65256/300‑1 (MQ=255)
                                                                                                                                                                                                                                                                                                   gCTTAAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCAGGGGTa  >  1:178162/1‑300 (MQ=255)
                                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                                         
TTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCAAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAG‑TTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTA‑CTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGGCGCTCGAGTCGAACCTTGGTCGAAGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTAATTGCGGATTCGTTGGGAAGTTCAGGGACTTTTGAAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCAGGGGTA  >  NC_000913/1286745‑1287335

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑