Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,808,138	2 bp→TA	intergenic (‑40/+27)	waaQ ← / ← rirA	lipopolysaccharide core heptosyltransferase 3/small regulatory RNA RirA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,808,138	0	C	T	100.0%	115.2 / NA	34	intergenic (‑40/+28)	waaQ/rirA	lipopolysaccharide core heptosyltransferase 3/small regulatory RNA RirA
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (11/23);  total (11/23)
*	NC_000913	3,808,139	0	G	A	100.0%	115.2 / NA	34	intergenic (‑41/+27)	waaQ/rirA	lipopolysaccharide core heptosyltransferase 3/small regulatory RNA RirA
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (11/23);  total (11/23)

AAGTTCCCGCACCTTTATTGCTTATCCCATAGAGCGCATTAATTTCCGGGTTTTCAGACAAAATAGGGATGGTGTCCTGATAAAGCAGCATATCGATTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCTTTT‑GT‑GT‑GATTGTCTGGTTAAG‑TTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTA  >  NC_000913/3807927‑3808306                                                                                                                                                                                                                    ||                                                                                                                                                                            atgcttttgcttttttattttttatgccgtAGAGCGCGTTAATCTCTGGATTTTCAGACAGGATCGGGATGGTGTCCTGATAAAGCAGCACATCGATTTTTGCGTCAGGGTAATTTTTTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGTTGA‑GATTATCCGATTAAGGTGAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATac                                                                                    <  2:163030/271‑2 (MQ=255) atgcttttacttttttattttttatgccgtAGAGCGCTTTAATCTCTGGATTTTCAGACAGGATCGGGATGGTGTCCTGATAAAGCAGCACATCGATTTTTGCGTCAGGGTAATTTTTTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGTTGA‑GATTATCCGATTAAGGTGAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATac                                                                                    <  2:281364/271‑2 (MQ=255) aggcttttgcttttttattttttatgccgtAGAGCGCGTTAATCTCTGGATTTTCAGACAGGATCGGGATGGTGTCCTGATAAAGCAGCACATCGATTTTTGCGTCAGGGTAATTTTTTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGTTGA‑GATTATCCGATTAAGGTGAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATac                                                                                    <  1:88137/271‑2 (MQ=255)      ttttcttttttattttttatgccgtAGAGCGCTTTAATCTCTGGATTTTCAGACAGGATCGGGATGGTGTCCTGATAAATCAGCACATCGNTTTTTGCGTCAGGGTAATTTTTTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGTTGA‑GATTATCCGATTAAGGTGAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATACCGCac                                                                               <  2:546744/276‑1 (MQ=255)           ttttttattttttatgccgtAGAGCGCGTTAATCTCTGGATTTTCAGACAGGATCGGGATGGTGTCCTGATAAAGCAGCACATCGATTTTTGCGTCAGGGTAATTTTTTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGTTGA‑GATTATCCGATTAAGGTGAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATACCGCactgata                                                                          <  1:279091/281‑5 (MQ=255)            tttttattttttatgccttAGAGCGCGTTAATCTCTGGATTTTCAGACAGGATCGGGATGGTGTCCTGATAAAGCAGCACATCGATTTTTGCGTCAGGGTAATTTTTTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGTTGA‑GATTATCCGATTAAGGTGAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATACCGCactgatat                                                                         <  1:703081/282‑6 (MQ=255)            tttttattttttatgccgtAGAGCGCGTTAATCTCTGGATTTTCAGACAGGATCGGGATGGTGTCCTGATAAAGCAGCACATCGATTTTTGCGTCAGGGTAATTTTTTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGTTGA‑GATTATCCGATTAAGGTGAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATACCGCactgatat                                                                         <  1:430736/282‑6 (MQ=255)            tttttattttttatgccgtAGAGCGCGGTAATCTCTGGATTTTCAGACAGGATCGGGATGGTGTCCTGATAAAGCAGCACATCGATTTTTGCGTCAGGGTAATTTTTTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGTTGA‑GATTATCCGATTAAGGTGAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATACCGCactgatat                                                                         <  2:145659/282‑6 (MQ=255)              tttattttttatgccgtAGAGCGCGTTAATCTCTGGATTTTCAGACAGGATCGGGATGGTGTCCTGATAAAGCAGCACATCGATTTTTGCGTCAGGGTAATTTTTTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGTTGA‑GATTATCCGATTAAGGTGAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATACCGCactgatattg                                                                       <  1:107323/284‑8 (MQ=255)              tttattttttatgccgtAGAGCGCGTTAATCTCTGGATTTTCAGACAGGATCGGGATGGTGTCCTGATAAAGCAGCACATCGATTTTTGCGTCAGGGTAATTTTTTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGTTGA‑GATTATCCGATTAAGGTGAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATACCGCactgatatt                                                                        >  2:664272/17‑293 (MQ=255)               ttattttttatgccgtAGAGCGCGTTAATCTCGGGATTTTCAGACAGGATCGGGATGGTGTCCTGATAAAGCAGCACATCGATTTTTGCGTCAGGGTAATTTTTTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCGTGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGTTGA‑GATTATCCGATTAAGGTTAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATACCGCactgatattga                                                                      <  2:167420/285‑9 (MQ=255)                tattttttatgccgtAGAGCGCGTTAATCTCTGGATTTTCAGACAGGATCGGGATGGTGTCCTGATAAAGCAGCACATCGATTTTTGCGTCAGGGTAATTTTTTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGTTGA‑GATTATCCGATTAAGGTGAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATACCGCactgatattgac                                                                     <  1:72533/286‑10 (MQ=255)                tattttttatgccgtAGAGCGCGTTAATCTCTGGATTTTCAGACAGGATCGGGATGGTGTCCTGATAAAGCAGCACATCGATTTTTGCGTCAGGGTAATTTTTTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGT‑TTAGATTATCCGATTAAGGTGAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATACCGCactgatattgac                                                                     <  1:280959/286‑10 (MQ=255)                 attttttatgccgtAGAGCGCGTTAGTCTCTGGATTTTCAGACAGGATCGGGATGGTGTCCTGATAAAGCAGCACATCGATTTTTGCGTCAGGGTAATTTTGTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAAGTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGTTGA‑GATTATCCGATTAAGGTGAAGCAGAGAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATACCGCactgatattg                                                                       <  2:76601/284‑8 (MQ=255)                          gccgtAGAGCGCGTTAATCTCTGGATTTTCAGACAGGATCGGGATGGTGTCCTGATAAAGCAGCACATCGATTTTTGCGTCAGGGTAATTTTTTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGTTGA‑GATTATCCGATTAAGGTGAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATACCGCACTGATATTGACGCGCTAgtgt                                                           >  1:26913/5‑300 (MQ=255)                          gccgtAGAGCGCGTTAAGCTCTGGATTTTCAGACAGGATCGGGATGGTGTCCTGATAAAGCAGCACATCGATTTTTGCGTCAGGGTAATTTTTTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGTTGA‑GATTATCCGATTAAGGTGAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATACCGCACTGATATTGACGCGCTAgtgt                                                           <  2:411117/296‑1 (MQ=255)                             gtAGAGCGCGTTAATCTCTGGATTTTCAGACAGGATCGGGATGGTGTCCTGATAAAGCAGCACATCGATTTTTGCGTNAGGGTAATTTTTTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGTTGA‑GATTATCCGATTAAGGTGAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATACCGCACTGATATTGACGCGCTAGTGTAt                                                         <  1:134566/298‑1 (MQ=255)                             gtAGAGCGCGTTAATCTCTGGATTTTCAGACAGGATCGGGATGGTGTCCTGATAAAGCAGCACATCGATTTTTGCGTCAGGGTAATTTTTTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGTTGA‑GATTATCCGATTAAGGTGAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATACCGCACTGATATTGACGCGCTAGTGTAt                                                         <  1:286701/298‑1 (MQ=255)                              tAGAGCGCGTTAATCTCTGGATTTTCAGACAGGATCGGGATGGTGTCCTGATAAAGCAGCACATCGATTTTTGCGTCAGGGTAATTTTTTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGTTGA‑GATTATCCGATTAAGGTGAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATACCGCACTGATATTGACGCGCTAGTGTATCa                                                       <  1:219784/300‑1 (MQ=255)                              tAGAGCGCGTTAATCTCTGGATTTTCAGACAGGATCGGGATGGTGTCCTGATAAAGCAGCACATCGATTTTTGCGTCAGGGTAATTTTNTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGT‑TTAGATTATCCGATTAAGGTGAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATACCGCACTGATATTGACGCGCTAGTGTAt                                                         <  2:553618/298‑1 (MQ=255)                               agagCGCGTTAATCTCTGGATTTTCAGACAGGATCGGGATGGTGTCCTGATAAAGCAGCACATCGATTTTTGCGTCAGGGTAATTTTTTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGTTGA‑GATTATCCGATTAAGGTGAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATACCGCACTGATATTGACGCGCTAGTGTATCac                                                      <  1:177070/300‑2 (MQ=255)                               agaacgcgttaatctctggattttCAGACAGGATCGGGATGGTGTCCTGATAAAGCAGCACATCGATTTTTGCGTCAGGGTAATTTTTTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGTTGA‑GATTATCCGATTAAGGTGAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATACCGCACTGATATTGACGCGCTAGTGTATCac                                                      <  1:264301/280‑2 (MQ=255)                                 agCGCGTTAATCTCTGGATTTTCAGACAGGATCGGGATGGTGTCCTGATAAAGCAGCACATCGATTTTTGCGTCAGGGTAATTTTTTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGTTGA‑GATTATCCGATTAAGGTGAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATACCGCACTGATATTGACGCGCTAGTGTATCactt                                                    <  1:119403/300‑4 (MQ=255)                                     ctgcgagatgtgtataagagacagggatcgggATGGTGTCCTGATAAAGCAGCACATCGATTTTTGCGTCAGGGTAATTTTTTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGATTATCCACAAGTAACTCTTTTTGTTGA‑GATTATCCGATTAAGGTGAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATACCGCACTGATATTGACGCGCTAGTGTATCActtcttt                                                >  1:197493/30‑300 (MQ=255)                                                ggattttCAGACAGGATCGGGATGGTGTCCTGATAAAGCAGCACATCGATTTTTGCGTCAGGGTAATTTTTTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGTTGA‑GATTATCCGATTAAGGTGAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATACCGCACTGATATTGACGCGCTAGTGTATCACTTCTTTCGCGGCAATcc                                     <  1:107531/297‑1 (MQ=255)                                                ggattttCAGACAGGATCGGGATGGTGTCCTGATAAAGCAGCACATCGATTTTTGCGTCAGGGTAATTTTTTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGT‑TTAGATTATCCGATTAAGGTGAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATACCGCACTGATATTGACGCGCTAGTGTATCACTTCTTTCGCGGCAATcc                                     <  1:108153/297‑1 (MQ=255)                                                             ggatcgggATGGTGTCCTGATAAAGCAGCACATCGATTTTTGCGTCAGGGTAATTTTTTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGTTGA‑GATTATCCGATTAAGGTGAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATACCGCACTGATATTGACGCGCTAGTGTATCACTTCTTTCGCGGCAATCCGGCCCGAATGAtt                        >  2:466794/6‑300 (MQ=255)                                                             ggatcgggATGGTGTCCTGATAAAGCAGCACATCGATTTTTGCGTCAGGGTAATTTTTTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGTTGA‑GATTATCCGATTAAGGTGAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATACCGCACTGATATTGACGCGCTAGTGTATCACTTCTTTCGCGGCAATCCGACCCGAATGAtt                        >  1:194819/6‑300 (MQ=255)                                                             ggatcgggATGGTGTCCTGATAAAGCAGCACATCGATTTTTGCGTCAGGGTAATTTTTTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGTTGA‑GATTATCCGATTAAGGTGAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATACCGCACTGATATTGACGCGCTAGTGTATCAATTCTTTCGCGGCAATCCGACCCGAATGAtt                        >  2:570094/6‑300 (MQ=255)                                                                tcgggATGGTGTCCTGATAAAGCAGCACATCGATTTTTGCGTCAGGGTAATTTTTTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGTTGA‑GATTATCCGATTAAGGTGAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATACCGCACTGATATTGACGCGCTAGTGTATCACTTCTTTCGCGGCAATCCGACCCGAATGAttttt                     >  1:520750/3‑300 (MQ=255)                                                                     aTGGTGTCCTGATAAAGCAGCACATCGATTTTTGCGTCAGGGTAATTTTTTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGTTGA‑GATTATCCGATTAAGGTGAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATACCGCACTGATATTGACGCGCTAGTGTATCACTTCTTTCGCGGCAATTCGACCCGAATGATTTTtaagca                >  1:265888/1‑296 (MQ=255)                                                                         tgtCCTGATAAAGCAGCACATCGATTTTTGCGTCAGGGTAATTTTTTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGTTGA‑GATTATCCGATTAAGGTGAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATACCGCACTGATATTGACGCGCTAGTGTATCACTTCTTTCGCGGCAATCCGACCCGAATGATTTTtaagcacatt            >  2:472717/1‑292 (MQ=255)                                                                                   aaGCAGCACATCGATTTTTGCGTCAGGGTAATTTTTTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGTTGA‑GATTATCCGATTAAGGTGAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATACCGCACTGATATTGACGCGCTAGTGTATCACTTCTTTCGCGGCAATCCGACCCGAATGATTTTtaagcacattgttgattttc  >  1:364588/1‑282 (MQ=255)                                                                                   aaGCAGCACATCGATTTTTGCGTCAGGGTAATTTTTTTTCAGCGAACTAATGACGGGAGTAGTTAATAACATATCCCCATGAAAACGCATCTTAATGAGCAAAATTCTTCGAAATGGCTTATCCACAAGTAACTCTTTTTGTTGA‑GATTATCCGATTAAGGTGAAGCAGAAAAA‑GCACGTTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATACCGCACTGATATTGACGCGCTAGTGTATCACTTCTTTCGCGGCAATCCGACCCGAATGATTTTtaagcacattgttgattttc  >  2:604244/1‑282 (MQ=255)                                                                                                                                                                                                                    ||                                                                                                                                                                            AAGTTCCCGCACCTTTATTGCTTATCCCATAGAGCGCATTAATTTCCGGGTTTTCAGACAAAATAGGGATGGTGTCCTGATAAAGCAGCATATCGATTTTTGCATCAGGATAATTCTGCTTGAGCGTACTGATGACAGGAGTAGTTAATAACATATCCCCATGATATCGCATCTTTATGACCAGGATTTTTCGAAATGGCTTTTCCACTAGCGACTCTTTT‑GT‑GT‑GATTGTCTGGTTAAG‑TTAAGCAGAAAAAAGCACGCTACCGCCCCAGGCTCAACAGCTACCTGAATACTGATAACGCACTTACTTTGACGTGCTAGTGTATCATTTCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTA  >  NC_000913/3807927‑3808306

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑