Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,142,163	G→A	S18L (TCG→TTG)	dcd ←	dCTP deaminase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,142,163	0	G	A	100.0%	210.4 / NA	63	S18L (TCG→TTG)	dcd	dCTP deaminase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (45/18);  total (45/18)

CGCCAGTGAGGAACGCCCGTCCAGCCAGCCCACCAGATCGGCTGGCAGCGTCACCGACTCCAGCGTCACCGCCAGCGCCAGCTCTCCTGGGTGAAGATAGAACGCCTCGCCCTCGTCGAGAACGATCTCATCGCTCATCACGCGGTCAAGCGCGGCGCTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCGACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCACTGAACGGTACACAATTTATCAAGCTTATTCAAAGAACTGACTTATTTTCGCTTTCAATATATCGATCGCGATGCGGTTTTTCCCGCCGCGCGGCACGATAATGTCCGCATATTGTTTAGAAGGCTCAATGAATTGCAGGAACATCGGGCGCACGGTTTTTTGATATTGCGC  >  NC_000913/2141874‑2142453                                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                                                   cgcCAGTGAGGAACGCCCGTCCAGCCAGCCCACCAGATCGGCTGGCAGTGTCACCGACTCCAGCGTCACCGCCAGCGCCAGCTCTCCTGGGTGAAGATAGAACGCCTCGCCCTCGTCGAGAACGATCTCATCGCTCATCACGCGGTCAAGCGCGGCGCTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGAGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGACGGACGTGGGTTGCTCAACAAACGGcc                                                                                                                                                                                                                                                                                          >  2:359894/1‑300 (MQ=255)        gAGGAACGCCCGTCCAGCCAGCCCACCAGATCGGCTGGCAGCGTCACCGACTCCAGCGTCACCGCCAGCGCCAGCTCTCCTGGGTGAAGATAGAACGCCTCGCCCTCGTCGAGAACGATCTCATCGCTCATCACGCGGTCAAGCGCGGCGCTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTtcatca                                                                                                                                                                                                                                                                                   >  1:414243/1‑300 (MQ=255)                  cGTCCAGCCAGCCCACCAGATCGGCTGGCAGCGTCACCGACTCCAGCGTCACCGCCAGCGCCAGCTCTCCTGGGTGAAGATAGAACGCCTCGCCCTCGTCGAGAACGATCTCATCGCTCATCACGCGGTCAAGCGCGGCGCTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCtt                                                                                                                                                                                                                                                                         >  1:172868/1‑300 (MQ=255)                   gTCCAGCCAGCCCACCAGATCGGCTGGCAGCGTCACCGACTCCAGCGTCACCGCCAGCGCCAGCTCTCCTGGGTGAAGATAGAACGCCTCGCCCTCGTCGAGAACGATCTCATCGCTCATCACGCGGTCAAGCGCGGCGCTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCt                                                                                                                                                                                                                                                                          <  1:48208/298‑1 (MQ=255)                   gTCCAGCCAGCCCACCAGATCGGCTGGCAGCGTCACCGACTCCAGCGTCACCGCCAGCGCCAGCTCTCCTGGGTGAAGATAGAACGCCTCGCCCTCGTCGAGAACGATCTCATCGCTCATCACGCGGTCAAGCGCGGCGCTCACTTCATCTTTGGGACCGCTCAGAACGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCt                                                                                                                                                                                                                                                                          <  1:48253/298‑1 (MQ=255)                       agccagccCACCAGATCGGCTGGCAGCGTCACCGACTCCAGCGTCACCGCCAGCGCCAGCTTTCCTGGGTGAAGATAGAACGCCTCGCCCTCGTCGAGAACGATCTCATCGCTCATCACGCGGTCAAGCGCGGCGCTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGTCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAat                                                                                                                                                                                                                                                                     <  1:381652/299‑1 (MQ=255)                                                   tCACCGACTCCAGCGTCACCGCCAGCGCCAGCTCTCCTGGGTGAAGATAGAACGCCTCGCCCTCGTCGAGAACGATCTCATCGCTCATCACTCGGTCAAGCGCGGCGCTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACCAACGGCCTTCATCAAGCCAGGCTTCAATATCTAGGTCAAACAGACGCATAGAAtttt                                                                                                                                                                                                                                        >  1:2439/1‑300 (MQ=255)                                                         aCTCCAGCGTCACCGCCAGCGCCAGCCCTCCTGGGTGAAGATAGAACGCCTCGCCCTCGTCGAGCACGATCTCATCGCTCATCACGCGATCAAACGCGGCGCTCACTTAATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCCGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGATTCAATAtct                                                                                                                                                                                                                                                                 >  2:198216/1‑269 (MQ=255)                                                          cTCCAGCGTCACCGCCAGCGCCAGCTCTCCTGGGTGAAGATAGAACGCCTCGCCCTCGTCGAGAACGATCTCATCGCTCATCACGCGGTCAAGCGCGGCGCTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCAAACAGACGCATGGCATTTTCTACttt                                                                                                                                                                                                                                 >  2:340973/1‑300 (MQ=255)                                                                           gcgccagcTCTCCTGGGTGAAGATAGAACGCCTCGCCCTCGTCGAGAACGATCTCATCGCTCATCACGCGGTCAAGCGCGGCGCTCACTTCATCTTTGGGACCGCTCAGATCGATACACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTACTTTCGCGCATCACTCCCTTa                                                                                                                                                                                                                >  2:662452/1‑300 (MQ=255)                                                                           gcgccagcTCTCCTGGGTGAAGATAGAACGCCTCGCCCTCGTCGAGAACGATCTCATCGCTCATCACGCGGTCAAGCGCGGCGCTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGAATGGCATTTTCTACTTTCGCGCATCACTCCCTTa                                                                                                                                                                                                                >  1:349227/1‑300 (MQ=255)                                                                           gcgccagcTCTCCTGGGTGAAGATAGAACGCCTCGCCCTCGTCGAGAACGATCTCATCGCTCATCACGCGGTCAAGCGCGGCGCTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTAGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCtt                                                                                                                                                                                                                 >  1:349096/1‑299 (MQ=255)                                                                                agcTCTCCTGGGTGAAGATAGAACGCCTCGCCCTCGTCGAGAACGATCTCATCGCTCATCACGCGGTCAAGCGCGGCGCTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACg                                                                                                                                                                                                             <  1:429642/298‑1 (MQ=255)                                                                                      ccTGGGTGAAGATAGAACGCCTCGCCCTCGTCGAGAACGATCTCATCGCTCATCACGCGGTCAAGCGCGGCGCTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGANATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTAGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTAc                                                                                                                                                                                                     >  2:507675/1‑300 (MQ=255)                                                                                      ccTGGGTGAAGATAGAACGCCTCGCCCTCGTCGAGAACGATCTCATCGCTCATCACGCGGTCAAGCGCGGCGCTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTAc                                                                                                                                                                                                     >  1:218885/1‑300 (MQ=255)                                                                                              aaGATAGAACGCCTCGCCCTCGTCGAGAACGATCTCATCGCTCATCACGCGGTCAAGCGCGGCGCTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAggg                                                                                                                                                                                             <  1:172658/300‑1 (MQ=255)                                                                                               aGATAGAACGCCTCGCCCTCGTCGAGGACGATCTCATCGCTCATCACGCGGTCAAGCGTGGCGCTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTAGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCACTTAACGCCAATTACGTCAAGGGc                                                                                                                                                                                            >  2:34978/1‑300 (MQ=255)                                                                                               aGATAGAACGCCTCGCCCTCGTCGAGAACGATCTCATCGCTCATCACGCGGTCAAGTGCGGCGCTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCAGGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCATTCATCAAGCCAGGCTTCAATATCTAGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCACTTAACGCCAATTACGTCAAGGGc                                                                                                                                                                                            >  2:273120/1‑300 (MQ=255)                                                                                               aGATAGAACGCCTCGCCCTCGTCGAGAACGATCTCATCGCTCATCACGCGGTCAAGTGCGGCGCTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTAGGTCAAACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGc                                                                                                                                                                                            >  2:76202/1‑300 (MQ=255)                                                                                               aGATAGAACGCCTCGCCCTCGTCGAGAACGATCTCATCGCTCATCACGCGGTCAAGCGCGGCGCTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTACCGCCAATTACGTCACGGGc                                                                                                                                                                                            >  1:634713/1‑300 (MQ=255)                                                                                               aGATAGAACGCCTCGCCCTCGTCGAGAACGATCTCATCGCTCATCACGCGGTCAAGCGCGGCGCTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCGAGGGc                                                                                                                                                                                            >  1:113177/1‑300 (MQ=255)                                                                                               aGATAGAACGCCTCGCCCTCGTCGAGAACGATCTCATCGCTCATCACGCGGTCAAGCGCGGCGCTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGc                                                                                                                                                                                            >  1:455009/1‑300 (MQ=255)                                                                                               aGATAGAACGCCTAGCCCTCGTCGAGAACGATCTCATCGCTCATCACGCGGTCAAGCGCGGCGCTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTAGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCCTCACTCCCTTAACGCCAATTACGTAAAGGGc                                                                                                                                                                                            >  2:272345/1‑300 (MQ=255)                                                                                                           tCGCCCTCGTCGAGAACGATCTCATCGCTCATCACGCGGTCAAGCGCGGCGCTCACTTCATATTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGAGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGtt                                                                                                                                                                                  <  1:648065/298‑1 (MQ=255)                                                                                                                 tcgtcgAGAACGATCTCATCGCTCATCACGCGGTCAAGCGCGGCGCTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTGCGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCAc                                                                                                                                                                             <  2:113177/297‑1 (MQ=255)                                                                                                                  cgtcgAGAACGATCTCATCGCTCATCACGCGGTCAAGCGCGGCGCTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGNGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCCTACTAGGTTATCACTGaa                                                                                                                                                                         >  2:218264/1‑300 (MQ=255)                                                                                                                   gtcgAGAACGATCTCATCGCGCATCACGCGGTCAAGCGCGGCGCTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCATGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGGACATCCACCTTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCACTGAAc                                                                                                                                                                        <  2:630620/300‑1 (MQ=255)                                                                                                                        gaACGATCTCATCGCTCATCACGCGGTCAAGCGCGGCGCTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCACTGAACGGTac                                                                                                                                                                   <  1:609992/300‑1 (MQ=255)                                                                                                                                      cTCATCACGCGGTCAAGCGCGGCGCTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCACTGAACGGTACACAATTTATCAAGc                                                                                                                                                     >  1:604381/1‑300 (MQ=255)                                                                                                                                      cTCATCACGCGGTCAAGCGCGGCGCTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACAGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCACTGAACGGTACACAATTTATCAAGc                                                                                                                                                     >  1:604860/1‑300 (MQ=255)                                                                                                                                                 gTCAAGCGCGGTGCTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCCCTCCCTTAACGCCAATTACGTCACGGGCATACTAGGTTATCACTGAACGGTACACAACTTATCAAGCTTATTCAAAGa                                                                                                                                          >  2:269133/1‑300 (MQ=255)                                                                                                                                                 gTCAAGCGCGGCGTTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCACTGAACGGTACACAATTTATCAAGCTTATTCAAAGa                                                                                                                                          >  1:492602/1‑300 (MQ=255)                                                                                                                                                 gTCAAGCGCGGCGCTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCACTGAACGGTACACAATTTATCAAGCTTATTCAAAGa                                                                                                                                          >  1:331885/1‑300 (MQ=255)                                                                                                                                                 gTCAAGCGCGGCGCTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTACTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCACTGAACGGTACACAATTTATCAAGCTTATTCAAAGa                                                                                                                                          >  2:275588/1‑300 (MQ=255)                                                                                                                                                        gcggcgCTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCACAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCAACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTACCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCACTGAACGGTACACAATTTATCAAGCTTATTCAAAGAAATGACt                                                                                                                                   >  2:182820/1‑300 (MQ=255)                                                                                                                                                                        cTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCACTGAACGGTACACAATTTATCAAGCTTATTCAAAGAACTGACTTATTTTCGCTTTCAat                                                                                                                   >  1:182247/1‑300 (MQ=255)                                                                                                                                                                        cTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCAACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTAGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCACTGAACGGTACACAATTTATCAAGCTTATTCAAAGAACTGACTTATTTTCGCTTTCAat                                                                                                                   >  1:182347/1‑300 (MQ=255)                                                                                                                                                                                  gCTCAGATCGATAAACGCTGCCTTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACNAGGTTATCACTGAACGGTACACAATTTATCAAGCTTATTCAAAGAACTGACTTATTTTCGCTTTCAATATatcgatc                                                                                                          >  1:132612/1‑299 (MQ=255)                                                                                                                                                                                       gATCGATAAACGCTGCNGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCACTGAACGGTACACAATTTATCAAGCTTATTCAAAGAANTGACTTATTTTCGCTTTCNATATATCGATCGCGAt                                                                                                     >  1:595935/1‑299 (MQ=255)                                                                                                                                                                                         tcgctAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCACTGAACGGTACACAATTTATCAAGCTTATTCAAAGAACTGACTTATTTTCGCTTTCAATATATCGATCGCGATGc                                                                                                   >  1:285219/5‑299 (MQ=255)                                                                                                                                                                                         tCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTAGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCACTGAACGGTACACAATTTATCAAGCTTATTCAAAGAACTGACTTATTTTCGCTTTCAATATATCGATCGCGATGc                                                                                                   >  1:287027/1‑299 (MQ=255)                                                                                                                                                                                          cGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCACTGAACGGTACACAATTTATCAAGCTTATTCAAAGAACTGACTTATTTTCGCTTTCAATATATCGATCGCGATGc                                                                                                   >  1:229359/1‑298 (MQ=255)                                                                                                                                                                                                            gACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCACTGAACGGTACACAATTTATCAAGCTTATTCAAAGAACTGACTTATTTTCGCTTTCAATATATCGATCGCGATGCGGTTTTTCCCGCCGCGCGGc                                                                               >  1:489748/1‑300 (MQ=255)                                                                                                                                                                                                              ccACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTACTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCACTGAACGGTACACAATTTATCAAGCTTATTCAAAGAACTGACTTATTTTCGCTTTCAATATATCGATCGCGATGCGGTTTTTCCCGCCGCGCGGCAc                                                                             >  2:440037/1‑300 (MQ=255)                                                                                                                                                                                                                  ggAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTNAACGCCAATTACGTCAAGGGCATACTAGGTTANCACTGAACGGTACACAATTTATCAAGCTTATTCAAAGAACTGACTTATTTTCGCTTTCAATATATCGATCGCGATGCGGTTTTTCCCGCCGCGCGGCACGAt                                                                          <  2:532948/299‑1 (MQ=255)                                                                                                                                                                                                                   gAAGGTACGAAATTTAGTGCCCAGGCGTACATCCATCGTCGCGCCGTTAATACACTCCACTGTCGGACGTGGGTTGATCAACAAACGGCCTTCATCAATCCAGGCTTCAATATCTCGGTCACACAGACACATGNCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCACGGAACGGTACACAATTTATCAAGCTTATTCAAAGAACTGACTTATTTTCGCTTTCAATATATCGATCGCGATGCGGTTTTTCCCGCCGCGCGGCACGATaa                                                                        <  2:222245/300‑1 (MQ=255)                                                                                                                                                                                                                         atgAAATTTATTGCCCAGGCGTACATCTACCGTCGCGACGTTAATACGCTCTACTGGCGGATGTGGTTTGGTCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACGGACGTATGGCATGTGCTCCTTTCTCGCATCACTCCCTTAACGCCAACTACGTCAAGGGCATACTAGGTTATCACTGAACGGTACACAATTTATCAAGCTTATTCAAAGAACTGACTTATTTTCGCTTTCAATATATCGATCGCGATGCGGTTTTTCCCGCCGCGCGGCACGATaa                                                                        <  2:309325/292‑1 (MQ=255)                                                                                                                                                                                                                              aTTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGCCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGTTTATCACTGAACGGTACACAATTTATCAAGCTTATTCAAAGAACTGACTTATTTTCGCTTTCAATATATCGATCGCGATGCGGTTTTTCCCGCCGCGCGGCACGATAATGTCCGCatat                                                             <  2:467664/300‑1 (MQ=255)                                                                                                                                                                                                                                          ggCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCACTGAACGGTACACAATTTATCAAGCTTATTCAAAGAACTGACTTATTTTCGCTTTCAATATATCGATCGCGATGCGGTTTTTCCCGCCGCGCGGCACGATAATGTCCGCATATTGTTTAGAAGGc                                                 >  2:317181/1‑300 (MQ=255)                                                                                                                                                                                                                                          ggCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTAGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCACTGAACGGTACACAATTTATCAAGCTTATTCAAAGAACTGACTTATTTTCGCTTTCAATATATCGATCGCGATGCGGTTTTTCCCGCCGCGCGGCACGATAATGTCCGCATATTGTTTAGAAGGc                                                 >  2:561463/1‑300 (MQ=255)                                                                                                                                                                                                                                          ggCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTAATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCACTGAACGGTACACAATTTATCAAGCTTATTCAAAGAACTGACTTATTTTCGCTTTCAATATATCGATCGCGATGCGGTTTTTCCCGCCGCGTGGCACGATAATGTCCGCATATTGTTTAGAAGGc                                                 >  2:365788/1‑300 (MQ=255)                                                                                                                                                                                                                                            cGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCACTGAACGGTACACAATTTATCAAGCTTATTCAAAGAACTGACTTATTTTCGCTTTCAATATATCGATCGCGATGCGGTTTTTCCCGCCGCGCGGCACGATAATGTCCGCATATTGTTTAGAAGGCTc                                               >  1:406088/1‑300 (MQ=255)                                                                                                                                                                                                                                            cGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTAGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCACTGAACGGTACACAATTTATCAAGCTTATTCAAAGAACTGACTTATTTTCGCTTTCAATATATCGATCGCGATGCGGTTTTTCCCGCCGCGCGGCACGATAATGTCCGCATATTGTTTAGAAGGCTc                                               >  1:405813/1‑300 (MQ=255)                                                                                                                                                                                                                                                        gTCGCGCCGTTAATACGCTCCATTGGCGGACGTGTGGGGATCAACAAACTGCCTTCACCAAGCCAGGCTTCAATATCTCGGTCACACAGACACATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAAGGCATACTAGGTTATCACGGAACGGTACACAATTTATCAAGCCTATTCAAAGAACTGACTTATTTCCGCTTTCAATATATCGATCGCGATGCGGTTTTTCCCGCCGCGCGGCACGATAATGTCCGCATAGTGTTTAGAAGGCTCAATGAATTGc                                     <  2:286700/298‑1 (MQ=255)                                                                                                                                                                                                                                                              ccGTTAATACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTAGGTCACACAGACGCATGGCATTTTCTACTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCACTGAACGGTACACAATTTATCAAGCTTATTCAAAGAACTGACTTATTTTCGCTTTCAATATATCGATCGCGATGCGGTTTTTCCCGCCGCGCGGCACGATAATGTCCGCATATTGTTTAGAAGGCTCAATGAATTGCAGGAACAt                             >  2:301072/1‑300 (MQ=255)                                                                                                                                                                                                                                                                   aaTACGCTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCACTGAACGGTACACAATTTATCAAGCTTATTCAAAGAACTGACTTATTTTCGCTTTCAATATATCGATCGCGATGCGGTTTTTCCCGCCGCGCGGCACGATAATGTCCGCATATTGTTTAGAAGGCTCAATGAATTGCAGGAACATCggg                         <  2:492602/299‑1 (MQ=255)                                                                                                                                                                                                                                                                         cTCCACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCACTGAACGGTACACAATTTATCAAGCTTATTCAAAGAACTGACTTATTTTCGCTTTCAATATATCGATCGCGATGCGGTTTTTCCCGCCGCGCGGCACGATAATGTCCGCATATTGTTTAGAAGGCTCAATGAATTGCAGGAACCTCGGgcgaac                    >  2:136768/1‑295 (MQ=255)                                                                                                                                                                                                                                                                           ccACTGGCGGACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCACTGAACGGTACACAATTTATCAAGCTTATTCAAAGAACTGACTTATTTTCGCTTTCAATATATCGATCGCGATGCGGTTTTTCCCGCCGCGCGGCACGATAATGTCCGCATATTGTTTAGAAGGCTCAATGAATTGCAGGAACATCGGGCGCACGGtt                >  1:563120/1‑300 (MQ=255)                                                                                                                                                                                                                                                                                    gACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCNTTTCGCGCATCACTCCCTTAACGCCAATTACTTCAAGGGCATACTAGGTTATCACTGAACGGTACACAATTTATCAAGCTTATTCAAAGAACTGACTTATTTTCGCTTTCAATATATCGATCGCGATGCGGTTTTTCCCGCCGCGCGGCACGATAATGTCCGCATATTGTTTAGAAGGCTCAATGAATTGCAGGAACATCGGGCGCACGGTTTTTTGatat       <  1:151903/300‑1 (MQ=255)                                                                                                                                                                                                                                                                                    gACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCACTGAACGGTACACAATTTATCAAGCTTATTCAAAGAACTGACTTATTTTCGCTTTCAATATATCGATCGCGATGCGGTTTTTCCCGCCGCGCGGCACGATAATGTCCGCATATTGTTTAGAAGGCTCAATGAAtt                                       <  1:286741/268‑1 (MQ=255)                                                                                                                                                                                                                                                                                    gACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCACTGAACGGTACACAATTTATCAAGCTTATTCAAAGAACTGACTTATTTTCGCTTTCAATATATCGATCGCGATGCGGTTTTTCCCGCCGCGCGGCACGATAATGTCCGCATATTGTTTAGAAGGCTCAATGAAtt                                       >  2:286741/1‑268 (MQ=255)                                                                                                                                                                                                                                                                                    gACGTGGGTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCACTGAACGGTACACAATTTATCAAGCTTATTCAAAGAACTGACTTATTTTCGCTTTCAATATATCGATCGCGATGCGGTTTTTCCCGCCGCGCGGCACGATAATGTCCGCATATTGTTTAGAAGGCTCAATGAATTGCAGGAACATCGGGCGCACGGTTTTTTGatat       >  1:291014/1‑300 (MQ=255)                                                                                                                                                                                                                                                                                         gggTTGATCAACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCACTGAACGGTACACAATTTATCAAGCTTATTCAAAGAACTGACTTATTTTCGCTTTCAATATATCGATCGCGATGCGGTTTTTCCCGCCGCGCGGCACGATAATGTCCGCATATTGTTTAGAAGGCTCAATGAATTGCAGGAACATCGGGCGCACGGTTTTTTGATATTgcgc  <  1:404345/300‑1 (MQ=255)                                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                                                   CGCCAGTGAGGAACGCCCGTCCAGCCAGCCCACCAGATCGGCTGGCAGCGTCACCGACTCCAGCGTCACCGCCAGCGCCAGCTCTCCTGGGTGAAGATAGAACGCCTCGCCCTCGTCGAGAACGATCTCATCGCTCATCACGCGGTCAAGCGCGGCGCTCACTTCATCTTTGGGACCGCTCAGATCGATAAACGCTGCCGTGTGACCACGGAAGGTACGAAATTTATTGCCCAGGCGTACATCCACCGTCGCGCCGTTAATACGCTCCACTGGCGGACGTGGGTTGATCGACAAACGGCCTTCATCAAGCCAGGCTTCAATATCTCGGTCACACAGACGCATGGCATTTTCTCCTTTCGCGCATCACTCCCTTAACGCCAATTACGTCAAGGGCATACTAGGTTATCACTGAACGGTACACAATTTATCAAGCTTATTCAAAGAACTGACTTATTTTCGCTTTCAATATATCGATCGCGATGCGGTTTTTCCCGCCGCGCGGCACGATAATGTCCGCATATTGTTTAGAAGGCTCAATGAATTGCAGGAACATCGGGCGCACGGTTTTTTGATATTGCGC  >  NC_000913/2141874‑2142453

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑