Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,708,467	Δ168 bp		[proK]	[proK]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3708467	3708634	168	34 [0]	[22] 56	[proK]	[proK]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3708466	0 (0.000)	34 (0.670)	27/372	0.5	100%	intergenic (‑761/+150)	dppA/proK	dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro
	?	NC_000913	3708635 =	0 (0.000)					noncoding (58/77 nt)	proK	tRNA‑Pro

CGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCCTTAATAGCAAAATGCCTTTTGATCGGCGAGAAAGTCAGCAGGCCGCTTAGTTAGCCGCTGCCTCTTTTGCCTGCGGGATGTGACACCAGTTGTTGTTTTCGTTAATTCCACCATCCGGTGAAGTATAGCCAAGACAACCCATGATGGTATCGTACAGCTCTACGTGACGGCGTGGCACTTTCAT  >  NC_000913/3708357‑3708921                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                               aaaaaagacaatggtttctgtcacaaatccgttaatggatagtgagatatggggcgcaaatttggcatggaaatgtgtgtcgtgtaggtcgaataaggcggtcgcgccgcatccgacaatggccggcacatttgcctgatgcgacgctgacgcgtcttatcaggcctacgtcgagtcgaacctccctgcccccggaggttctcatcctcatgagctgcagatgcaaaaaagcctgctcgttgagcaggcttttcgaatttggtcggtgatagaggattCGAACCTCCGACCCCTTCGTcc                                                                                                                                                                                                                                                                           <  2:637837‑M2/22‑1 (MQ=255)                ttctgtcacaaatccgttaatggatagtgagatatggggcgcaaatttggcagggaaatgtgtgtcgtgtaggtcgaataaggcggtcgcgccgcatccgacaatggccggcacatttgcctgatgcgacgctgacgcgtcttatcaggcctacgtcgagtcgaacctccctgcccccggaggttctcatcctcatgagctgcagatgtaaaaaagcctgctcgttgagcaggcttttcgaatttggtcggtgatagaggattCAAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCt                                                                                                                                                                                                                                                            >  2:329875‑M2/264‑300 (MQ=255)                   tgtcacaaatccgttaatggatagtgagatatggtgcgcaaatttggcattgaaatgtgtgtcgtgtaggtcgaataaggcggtcgcgccgcatccgacaatggccggcacatttgcctgatgcgacgctgacgcgtcttatcaggcctacgtcgagtcgaacctccctgcccccggaggttctcatcctcatgagctgcagatgcaaaaaagcctgctcgttgagcaggcttttcgaatttggtcggtgatagaggattCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTAc                                                                                                                                                                                                                                                          <  2:341990‑M2/39‑1 (MQ=255)                       acaaatccgttaatggatagtgagatatggggcgcaaatttggcatggaaatgtgtgtcgtgtaggtcgaataaggcggtcgcgccgcatccgacaatggccggcacatttgcctgatgcgacgctgacgcgtcttatcaggcctacgtcgagtcgaacctcccngcccccggaggttctcatcctcatgagctgcanatgcaaaaaagcctgctcgttgagcaggcttttcgaatttggtcggtgatagaggattCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGc                                                                                                                                                                                                                                                     <  2:475533‑M2/44‑1 (MQ=255)                         aaatccgttaatggatagtgagatatggggcgcaaatttggcagggaaatgtgtgtcgtgtaggtcgaataaggcggtcgcgccgcatccgacaatggccggcacatttgcctgatgcgacgctgacgcgtcttatcaggcctacgtcgagtcgaacctccctgcccccggaggttctcatcctcatgagctgcagatgcaaaaaagcctgctcgttgagcaggcttttcgaatttggtcggtgatagaggattCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTg                                                                                                                                                                                                                                                   <  1:19939‑M2/46‑1 (MQ=255)                         aaatccattaatggatagtgagatatggggcgcaaatttggcagggaaatgtgtgtcgtgtaggtcgaataaggcggtcgcgccgcatccgacaatggccggcacatttgcctgatgcgacgctgacgcgtcttatcaggcctacgtcgagtcgaacctccctgcccccggaggttctcatcctcatgagctgcagatgcaaaaaagcctgctcgttgagcaggcttttcgaatttggtcggtgatagaggattCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTg                                                                                                                                                                                                                                                   <  1:19946‑M2/46‑1 (MQ=255)                                     ggatagtgagatatggggcgcaaatttggcagggaaatgtgtgtcgtgtaggtcgaataaggcggtcgcgccgcatccgacaatggccggcacatttgcctgatgcgacgctgacgcgtcttatcaggcctacgtcgagtcgaacctccctgcccccggaggttctcatcctcatgagctgcagatgcaaaaaagcctgctcgttgagcaggcttttcgaatttggtcggtgatagaggattCGAACCTCCGACCCCTTCGTCCAGAACGAAGTGTGCTCCCAGGCTGCGCCCATCAcc                                                                                                                                                                                                                                        >  2:27453‑M2/243‑299 (MQ=255)                                     ggatagtaagatatggggcgcaaatttggcagggaaatgtgtgtcgtgtaggtcgaataaggcggtcgcgccgcatccgacaatggccggcacatttgcctgatgcgacgctgacgcgtcttatcaggcctacgtcgagtcgaacctccctgcccccggaggttctcatcctcatgagctgcagatgcaaaaaagcctgctcgttgagcaggcttttcgaatttggtcggtgatagaggattCGAACCTCCGACCCCTTCGtcccgaacgaggt                                                                                                                                                                                                                                                                 >  2:27004‑M2/243‑271 (MQ=255)                                       atagtgagatatggggcgcaaatttggcagggaaatgtgtgtcgtgtaggtcgaataaggcggtcgcgccgcatccgacaatggccggcacatttgcctgatgcgacgctgacgcgtcttatcaggcctacgtcgagtcgaacctccctgcccccggaggttctcatcctcatgagctgcagatgcaaaaaagcctgctcgttgagcaggcttttcgaatttggtcggtgatagaggattCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGaa                                                                                                                                                                                                                                     >  1:40187‑M2/241‑300 (MQ=255)                                          gtgagatatggggcgcaaatttggcagggaaatgtgtgtcgtgtaggtcgaataaggcggtcgcgccgcatccgacaatggcctgcacatttgcctgatgcgacgctgacgcgtcttatcaggcctacgtcgagtcgaacctccctgcccccggaggttctcatcctcatgagctgcagatgcaaaaaagcctgctcgttgagcaggcttttcgaatttggtcggtgatagaggattCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGc                                                                                                                                                                                                                                  >  1:431130‑M2/238‑300 (MQ=255)                                            gagatatggggcgcaaatttggcagggaaatgtgtgtcgtgtaggtcgaataaggcggtcgcgccgcatccgacaatggccggcacatttgcctgatgcgacgctgacgcgtcttatcaggcctacgtcgagtcgaacctccctgcccccggaggttctcatcctcatgagctgcagatgcaaaaaagcctgctcgttgagcaggcttttcgaatttggtcggtgatagaggattCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGc                                                                                                                                                                                                                                  >  2:589911‑M2/236‑298 (MQ=255)                                              gatatggggcgcaaatttggcagggaaatgtgtgtcgtgtaggtcgaataaggcggtcgcgccgcatccgacaatggccggcacatttgcctgatgcgacgctgacgcgtcttatcaggcctacgtcgagtcgaanctccctgcccccggaggttctcatcctcatgagctgcagatgcaaaaaagcctgctcgttgagcaggcttttcgaatttggtcggtgatagaggattCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGc                                                                                                                                                                                                                                  >  2:467989‑M2/234‑296 (MQ=255)                                                          aaatttggcagggaaatgtgtgtcgtgtaggtcgaataaggcggtcgcgccgcatccgacaatggccggcacatttgcctgatgcgacgctgacgcgtcttatcaggcctacgtcgagtcgaacctccctgcccccggaggttctcatcctcatgagctgcagatgcaaaaaagcctgctcgttgagcaggcttttcgaatttggtcggtgatagaggattCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACt                                                                                                                                                                                                                   >  2:276707‑M2/222‑299 (MQ=255)                                                          aaatttggcagggaaatgtgtgtcgtgtaggtcgaataaggcggtcgcgccgcatccgacaatggccggcacatttgcctgatgcgacgctgacgcgtcttatcaggcctacgtcgagtcgaacctccctgcccccggaggttctcatcctcatgagctgcagatgcaaaaaagcctgctcgttgagcaggcttttcgaatttggtcggtgatagaggattCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCAACGAATGCGGGGCGCATCTTAc                                                                                                                                                                                                                    <  1:336380‑M2/77‑1 (MQ=255)                                                                   agggggataggggtcgtgtaggtctaataaggcagccacgccgcatccgacaatgctcggcacatttgcctgatgcgacgctgacgcgtcttattaggcctacgtcgagtcgaacctccctgcccccggaggtgctcatcctcatgagctgcagatgcaaaaaagccggctcgttgagcaggcttttcgaatttggtcggtgatagaggattCGAACCGCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAACCACCGAATGCGGTGCGCATCTTACTGCGCAGATa                                                                                                                                                                                                          <  2:325131‑M2/87‑1 (MQ=255)                                                                   agggaaatgtttgtcgtgtaggtcgaataaggcggtcgcgccgcatccgacaatggccggcacatttgcctgatgcgacgctgacgcgtcttatcaggcctacgtcgagtcgaacctccctgcccccggaggttctcatcctcatgagctgcagatgcaaaaangcctgctcgttgagcaggcttttcgaatttggncggtgatagaggattCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATa                                                                                                                                                                                                          <  2:481898‑M2/87‑1 (MQ=255)                                                                       gaatgtgtgtcgtgtaggtcgaataaggcggtcgcgccgcatccgacaatggccggcacatttgcctgatgcgacgctgacgcgtcttatcaggcctacgtcgagtcgaacctccctgcccccggaggttctcatcctcatgagctgcagatgcaaaaaagcctgctcgttgagcaggcttttcgaatttggtcggtgatagaggattCGAACCTCCGACCCCTTCGTCCCTAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGTGTCGCATCTTACTGCGCAGATACcccc                                                                                                                                                                                                     <  1:618427‑M2/92‑1 (MQ=255)                                                                       aaatgtgtgtcgtgtaggtcgaataaggcggtcgcgccgcatccgacaatggccggcacatttgcctgatgcgacgctgacgcgtcttatcaggcctacttcgagtcgaacctccctgcccccggaggttctcatcctcatgagctgcagatgcaaaaaagcctgctcgttgagcaggcttttcgaatttggtcggtgatagaggattCGAACCTCCGACCACTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGccc                                                                                                                                                                                                     <  1:209756‑M2/92‑1 (MQ=255)                                                                       aaatgtgtgtcgtggaggtcgaataatgcgttcgcgccgcatccgacaatgtccggcacattggcctgatgcgacgctgacgcgtcttatcaggcctacttcgagtcgaacctccctgccctcggaggttctcatcctcatgagctgcagatgcaaaaaagcctgctcgttgagcaggcttttcgaatttggtcggtgatagaggattCGAACCTCCGACCCCTTCGTCCCAAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGcc                                                                                                                                                                                                      <  2:381143‑M2/91‑1 (MQ=255)                                                                        aatgtgtgtcgtgtaggtcgaataaggcggtcgcgccgcacccgacaatggccggcacatttgcctgatgcgacgctgacgcgtcttatcaggcctacgtcgagtcgaacctccctgcccccggaggttctcatcctcatgagctgcagatgcaaaaaagcctgctcgttgagcaggcttttcgaatttggtcggtgatagaggattCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACgcccc                                                                                                                                                                                                    >  2:618427‑M2/208‑299 (MQ=255)                                                                                  gtgtaggtcgaataaggcggtcgcgccgcatccgacaatggccggcacatttgcctgatgcgacgctgacgcgtcttntcaggcctacgtcgagtcgaacctccctgcccccggaggttctcatcctcatgagctgcagatgcaaaaaagcctgctcgttgagcaggcttttcgaatttggtcggtgatagaggattCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATcc                                                                                                                                                                                           <  1:456250‑M2/102‑1 (MQ=255)                                                                                  gtgtaggtcgaataaggcggtcgcgccgcatccgacaatggccggcacatttgcctgatgcgacgctgacgcgtcttatcaggcctacgtcgagtcgaacctccctgcccccggaggttctcatcctcatgagctgcagatgcaaaaaagcctgctcgttgagcaggcttttcgaatttggtcggtgatagaggattCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATcc                                                                                                                                                                                           <  1:83885‑M2/102‑1 (MQ=255)                                                                                           gaataaggcggtcgcgccgcatccgacaatggccggcacatttgcctgatgcgacgctgacgcgtcttatcaggcctacgtcgagtcgaacctccctgcccccggaggttctcatcctcatgagctgcagatgcaaaaaagcctgctcgttgagcaggcttttcgaatttggtcggtgatagaggattCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCCTTAATAGCa                                                                                                                                                                                 >  1:38535‑M2/189‑300 (MQ=255)                                                                                            aataaggcggtcgcgccgcatccgacaatggccggcacatttgcctgatgcgacgctgacgcgtcttatcaggcctacgtcgagtcgaacctccctgcccccggaggttctcatcctcatgagctgcagatgcaaaaaagcctgctcgttgagcaggcttttcgaatttggtcggtgatagaggattCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCCTTAATAGCaa                                                                                                                                                                                <  2:40187‑M2/113‑1 (MQ=255)                                                                                                             gcatccgacaatggccggcacatttgcctgatgcgacgctgacgcgtcttatcaggcctacgtcgagtcgaacctccctgcccccggaggttctcatcctcatgagctgcagatgcaaaaaagcctgctcgttgagcaggcttttcgaatttggtcggtgatagaggattCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCATTAATAGCAAAATGCATTTTGATCGGc                                                                                                                                                               >  1:583396‑M2/171‑300 (MQ=255)                                                                                                             gcatccgacaatggccggcacatttgcctgatgcgacgctgacgcgtcttatcaggcctacgtcgagtcgaacctccctgcccccggaggttctcatcctcatgagctgcagatgcaaaaaagcctgctcgttgagcaggcttttcgaatttggtcggtgatagaggattCGAACCTCCGACCCCTTCGTCCAGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCATTAATAGCAAAATGCCTTTTGATCGGc                                                                                                                                                               >  1:233854‑M2/171‑300 (MQ=255)                                                                                                                         ggccggcacatttgcctgatgcgacgctgacgcgtcttatcaggcctacgtcgagtcgaacctccctgcccccggaggttctcatcctcatgagctgcagatgcaaaaaagcctgctcgttgagcaggcttttcgaatttggtcggtgatagaggattCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCCTTAATAGCAAAATGCCTTTTGATCGGCTAGAAAGTcagc                                                                                                                                                   <  1:79666‑M2/142‑1 (MQ=255)                                                                                                                                 catttgcctgatgcgacgctgacgcgtcttatcaggcctacgtcgagtcgaacctccctgcccccggaggttctcatcctcatgagctgcagatgcaaaaaagcctgctcgttgagcaggcttttcgaatttggtcggtgatagaggattCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCCTTAATAGCAAAATGCCTTTTGATCGGCGAGAAAGTCAGCAGGCCGc                                                                                                                                            >  2:127907‑M2/151‑299 (MQ=255)                                                                                                                                         tgatgctacgctgacgcgtcgtatcaggcctacttcgagtcgaacctccctgcccccggaggttctcatcctcatgagctgtagatgcaaaaaagcctgctctttgagcaggcttttcgaatttggtcggtgatagaggattCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCCTTAATAGCAAAATGCCTTTTGATCGGCGAGAAAGTCAGCAGGCCGCttagtta                                                                                                                                     <  2:627206‑M2/156‑1 (MQ=255)                                                                                                                                                          gtcttatcaggcctacgtcgagtcgaacctccctgcccccggaggttctcatcctcatgagctgcagatgcaaaaaagcctgctcgttgagcaggcttttcgaatttggtcggtgatagaggattCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCCTTAATAGCAAAATGCCTTTTGATCGGCGAGAAAGTCAGCAGGCCGCTTAGTTAGCCGCTGCCTCTTTTGcc                                                                                                                   <  1:589911‑M2/174‑1 (MQ=255)                                                                                                                                                              tatcaggcctacgtcgagtcgaacctccctgcccccggaggttctcatcctcatgagctgcagatgcaaaaaagcctgctcgttgagcaggcttttcgaatttggtcggtgatagaggattCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCCTTAATAGCAAAATGCCTTTTGATCGGCGAGAAAGTCAGCAGGCCGCTTAGTTAGCCGCTGCCTCTTTTGCCTGc                                                                                                                >  2:172013‑M2/122‑298 (MQ=255)                                                                                                                                                                   ggcctacgtcgagtcgaacctccctgcccccggaggttctcatcctcatgagctgcagatgcaaaaaagcctgctcgttgagcaggcttttcgaatttggtcggtgatagaggattCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCCTTAATAGCAAAATGCCTTTTGATCGGCGAGAAAGTCAGCAGGCCGCTTAGTTAGCCGCTGCCTCTTTTGCCTGCGGGAtgt                                                                                                         >  1:518098‑M2/117‑300 (MQ=255)                                                                                                                                                                       tacgtcgagtcgaacctccctgcccccggaggttctcatcctcatgagctgcagatgcaaaaaagcctgctcgttgagcaggcttttcgaatttggtcggtgatagaggattCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCCTTAATAGCAAAATGCCTTTTGATCGGCGAGAAAGTCAGCAGGCCGCTTAGTTAGCCGCTGCCTCTTTTGCCTGCTGGATGTGac                                                                                                      <  1:113451‑M2/187‑1 (MQ=255)                                                                                                                                                                       tacgtcgagtcgaacctccctgcccccggaggttctcatcctcatgagctgcagatgcaaaaaagcctgctcgttgagcaggcttttcgaatttggtcggtgatagaggattCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCCTTAATAGCAAAATGCCTTTTGATCGGCGAGAAAGTCAGCAGGCCGCTTAGTTAGCCGCTGCCTCTTTTGCCTGCGGGATGTGac                                                                                                      <  1:113465‑M2/187‑1 (MQ=255)                                                                                                                                                                             gAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCCTTAATAGCAAAATGCCTTTTGATCGGCGAGAAAGTCAGCAGGCCGCTTAGTTAGCCGCTGCCTCTTTTGCCTGCGGGATGTGACACCAgtt                                                                                               >  1:644185/1‑300 (MQ=255)                                                                                                                                                                                      cTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCCTTAATAGCAAAATGCCTTTTGATCGGCGAGAAAGTCAGCAGGCCGCTTAGTTAGCCGCTGCCTCTTTTGCCTGCGGGATGTGACACCAGTTGTTGTTTTc                                                                                      >  1:357042/1‑300 (MQ=255)                                                                                                                                                                                            gCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCCTTAATAGCAAAATGCCTTTTGATCGGCGAGAAAGTCAGCAGGCCGCTTAGTTAGCCGCTGCCTCTTTTGCCTGCGGGATGTGACACCAGTTGTTGTTTTCGTTAAt                                                                                >  1:187609/1‑300 (MQ=255)                                                                                                                                                                                                      gTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCCTTAATAGCAAAATGCCTTTTGATCGGCGAGAAAGTCAGCAGGCCGCTTAGTTAGCCGCTGCCTCTTTTGCCTGCGGGATGTGACACCAGTTGTTGTTTTCGTTAATTCCACCATcc                                                                      >  1:413720/1‑300 (MQ=255)                                                                                                                                                                                                                                   aaaaGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCCTTAATAGCAAAATGCCTTTTGATCGGCGAGAAAGTCAGCAGGCCGCTTAGTTAGCCGCTGCCTCTTTTGCCTGCGGGATGTGACACCAGTTGTTGTTTTCGTTAATTCCACCATCCGGTGAAGTATAGCCAAGACAACCCatgat                                         <  1:310229/300‑1 (MQ=255)                                                                                                                                                                                                                                          tGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCCTTAATAGCAAAATGCCTTTTGATCGGCGAGAAAGTCAGCAGGCCGCTTAGTTAGCCGCTGCCTCTTTTGCCTGCGGGATGTGACACCAGTTGTTGTTTTCGTTAATTCCACCATCCGGTGAAGTATAGCCAAGACAACCCATGATGGTATc                                   >  1:629820/1‑299 (MQ=255)                                                                                                                                                                                                                                             tCGTTGAGCAGGCTTTTCGAATTTGGTCGTTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCCTTAATAGCAAAATGCCTTTTGATCGGCGAGAAAGTCAGCAGGCCGCTTAGTTAGCCGCTGCCTCTTTTGCCTGCGGGATGTGACACCAGTTGTTGTTTTCGTTAATTCCACCATCCGGTGAAGTATAGCCAAGACAACCCATGATGGTATCGTAc                               <  1:340771/300‑1 (MQ=255)                                                                                                                                                                                                                                             tCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCCTTAATAGCAAAATGCCTTTTGATCGGCGAGAAAGTCAGCAGGCCGCTTAGTTAGCCGCTGCCTCTTTTGCCTGCGGGATGTGACACCAGTTGTTGTTTTCGTTAATTCCACCATCCGGTGAAGTATAGCCAAGACAACCCATGATGGTATCGTAc                               >  1:60021/1‑300 (MQ=255)                                                                                                                                                                                                                                               gtttaGCAGGCTTTTCGAATTTGGTCGTTGATAGATGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCGCGTCAATCCCTTAATAGCAAAATGCCTTTTGATCGGCGAGAAAGTCAGCAGGCCGCTTAGTTAGCCGCTGCCTCTTTTGCCTGCGGGATGTGACACCAGTTGTTGTTTTCGTTAATTCCACCATCCGGTGAAGTATAGCCAAGATAACCCATGATGGTATCGTACAg                             <  2:63494/296‑1 (MQ=255)                                                                                                                                                                                                                                                  gAGCAGGCTTTTCGAATTTGGTCGTTGATATAGGATTCGAACCTCCGACCCCTTCGTCCCGAACTAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGAGACGCCCTCGTCAATCCCTTAATAGCAAAATGCCTTTTGATCGGCGAGAAAGTCAGCAGGCCGCTTAGTTAGCCGCTGCCTCTTTTGCCTGCGGGATGTGACACCAGTTGTTGTTTTCGTTAATTCCACCATCCGGTGAAGTATAGCCAAGACAACCCATGATGGTATCGTACAGctc                          <  2:175642/300‑1 (MQ=255)                                                                                                                                                                                                                                                  gAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCCTTAATAGCAAAATGCCTTTTGATCGGCGAGAAAGTCAGCAGGCTGCTTAGTTAGCCGCTGCCTCTTTTGCCTGCGGGATGTGACACCAGTTGTTGTTTTCGTTAATTCCACCATCCGGTGAAGTATAGCCAAGACAACCCATGATGGTATCGTACAGctc                          <  1:24430/300‑1 (MQ=255)                                                                                                                                                                                                                                                       ggtttttCGAATTTGGTCGTTGATATAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCTGGGCGCATCTTACTGCGCAGATACGCCCTCGTNAATCCCTTAAGAGCAAAATGCCTTTTGATCGGCGAGAAAGTCAGCAGGCCGCTTAGTTAGCCGCTGCCTCTTTTGCCTGCGGGACGTGACACCAGTTGTTGTTTTCGTTAATTCCACCATCCGGTGAAGTATAGCCAAGACAACCCATGATGGTATCGTACAGctc                          <  2:197496/292‑1 (MQ=255)                                                                                                                                                                                                                                                       ggCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGNGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCCTTAATAGCAAAATGCCTTTTGATCGGCGAGAAAGTCAGCAGGCCGCTTAGTTAGCCGCTGCCTCTTTTGCCTGCGGGATGTGACACCAGTTGTTGTTTTCGTTAATTCCACCATCCGGTGAAGTATAGCCAAGACAACCCATGATGGTATCGTACAGCTCTACGt                     <  1:135829/300‑1 (MQ=255)                                                                                                                                                                                                                                                            ttCGAATTTGGTCGTTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCCTTAATAGCAAAATGCCTTTTGATCGGCGAGAAAGTCAGCAGGCCGCTTAGTTAGCCGCTGCCTCTTTTGCCTGCGGGATGTGACACCAGTTGTTGTTTTCGTTAATTCCACCATCCGGTGAAGTATAGCCAAGACAACCCATGATGGTATCGTACAGc                            <  2:401324/288‑1 (MQ=255)                                                                                                                                                                                                                                                            ttCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCCTTAATAGCAAAATGCCTTTTGATCGGCGAGAAAGTCAGCAGGCCGCTTAGTTAGCCGCTGCCTCTTTTGCCTGCGGGATGTGACACCAGTTGTTGTTTTCGTTAATTCCACCATCCGGTGAAGTATAGCCAAGACAACCCATGATGGTATCGTACAGc                            >  1:401324/1‑288 (MQ=255)                                                                                                                                                                                                                                                                    tGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGGGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCCTTAATAGCAAAATGCCTTTTGATCGGCTAGAAAGTCAGCAGGCCGCTTAGGTAGCCGCTGCCTCTTTTGCCTGCGGGATGTGACACCAGTTGTTGTTTTCGTTAATTCCACCATCCGGTGAAGTATAGCCAAGACAACCCATGATGGTATCGTACAGCTCTACGTGACGGCGTGGCAc        <  1:175640/300‑1 (MQ=255)                                                                                                                                                                                                                                                                      gTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCCTTAATAGCAAAATGCCTTTTGATCGGCGAGAAAGTCAGCAGGCCGCTTAGTTAGCCGCTGCCTCTTTTGCCTGCGGGATGTGACACCAGTTGTTGTTTTCGTTAATTCCACCATCCGGTGAAGTATAGCCAAGACAACCCATGATGGTATCGTACAGCTCTACGTGACGGCGTGGCACtt      <  1:425731/300‑1 (MQ=255)                                                                                                                                                                                                                                                                          gTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCCTTAATAGCAAAATGCCTTTTGATCGGCGAGAAAGTCAGCAGGCCGCTTAGTTAGCCGCTGCCTCTTTTGCCTGCGGGATGTGACACCAGTTGTTGTTTTCGTTAATTCCCCCATCCGGTGAAGTATAGCCAAGACAACCCATGATGGTATCGTACAGCTCTACGTGACGGCGTGGCACTTTCAt  >  2:616131/1‑300 (MQ=255)                                                                                                                                                                                                                                                                          gTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCCTTAATAGCAAAATGCCTTTTGATCGGCGAGAAAGTCAGCAGGCCGCTTAGTTAGCCGCTGCCTCTTTTGCCTGCGGGATGTGACACCAGTTGTTGTTTTCGTTAATTCCACCATCCGGTGAAGTATAGCCAAGACAACCCATGATGGTATCGTACAg                             <  2:618340/273‑1 (MQ=255)                                                                                                                                                                                                                                                                          gTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCCTTAATAGCAAAATGCCTTTTGATCGGCGAGAAAGTCAGCAGGCCGCTTAGTTAGCCGCTGCCTCTTTTGCCTGCGGGATGTGACACCAGTTGTTGTTTTCGTTAATTCCACCATCCGGTGAAGTATAGCCAAGACAACCCATGATGGTATCGTACAg                             >  1:618340/1‑273 (MQ=255)                                                                                                                                                                                                                                                                          gTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCCTTAATAGCAAAATGCCTTTTGATCGGCGAGAAAGTCAGCAGGCCGCTTAGTTAGCCGCTGCCTCTTTTGCCTGCGGGATGTGACACCAGTTGTTGTTTTCGTTAATTCCACCATCCGGTGAAGTATAGCCAAGACAACCCATGATGGTATCGTACAGCTCTACGTGACGGCGTGGCACTTTCAt  >  1:564833/1‑300 (MQ=255)                                                                                                                                                                                                                                                                          gTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCATTAATAGCAAAATGCCTTTTGATCGGCGAGAAAGTCAGCAGGCCGCTTAGTTAGCCGCTGCCTCTTTTGCCTGCGGGATGTGACACCAGTTGTTGTTTTCGTTAATTCCACCATCCGGTGAAGTATAGCCAAGACAACCCATGATGGTATCGTACAGCTCTACGTGACGGCGTGGCACTTTCAt  >  2:544354/1‑300 (MQ=255)                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                               CGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAGGCTGCGCCAATCACCGAATGCGGGGCGCATCTTACTGCGCAGATACGCCCTCGTCAATCCCTTAATAGCAAAATGCCTTTTGATCGGCGAGAAAGTCAGCAGGCCGCTTAGTTAGCCGCTGCCTCTTTTGCCTGCGGGATGTGACACCAGTTGTTGTTTTCGTTAATTCCACCATCCGGTGAAGTATAGCCAAGACAACCCATGATGGTATCGTACAGCTCTACGTGACGGCGTGGCACTTTCAT  >  NC_000913/3708357‑3708921

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑