mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 14,172 | C→T | A2V (GCT→GTT) | dnaJ → | chaperone protein DnaJ |
| RA | 64,536 | C→T | V415V (GTG→GTA) | polB ← | DNA polymerase II |
| RA | 64,539 | T→C | S414S (TCA→TCG) | polB ← | DNA polymerase II |
| RA | 64,593 | C→T | P396P (CCG→CCA) | polB ← | DNA polymerase II |
| RA | 64,635 | A→G | H382H (CAT→CAC) | polB ← | DNA polymerase II |
| RA | 64,641 | T→A | R380R (CGA→CGT) | polB ← | DNA polymerase II |
| RA | 64,644 | C→A | P379P (CCG→CCT) | polB ← | DNA polymerase II |
| RA | 64,665 | T→C | A372A (GCA→GCG) | polB ← | DNA polymerase II |
| RA | 64,677 | A→T | G368G (GGT→GGA) | polB ← | DNA polymerase II |
| RA | 64,680 | G→C | G367G (GGC→GGG) | polB ← | DNA polymerase II |
| RA | 64,686 | T→G | R365R (CGA→CGC) | polB ← | DNA polymerase II |
| RA | 64,692 | C→T | V363V (GTG→GTA) | polB ← | DNA polymerase II |
| RA | 64,713 | T→C | A356A (GCA→GCG) | polB ← | DNA polymerase II |
| RA | 64,716 | C→T | R355R (CGG→CGA) | polB ← | DNA polymerase II |
| RA | 64,749 | G→A | H344H (CAC→CAT) | polB ← | DNA polymerase II |
| RA | 64,755 | G→A | I342I (ATC→ATT) | polB ← | DNA polymerase II |
| RA | 64,794 | T→C | A329A (GCA→GCG) | polB ← | DNA polymerase II |
| RA | 64,883 | G→A | L300L (CTA→TTA) | polB ← | DNA polymerase II |
| RA | 64,896 | A→G | T295T (ACT→ACC) | polB ← | DNA polymerase II |
| RA | 65,028 | G→A | S251S (AGC→AGT) | polB ← | DNA polymerase II |
| RA | 65,031 | A→G | N250N (AAT→AAC) | polB ← | DNA polymerase II |
| RA | 65,043 | A→C | L246L (CTT→CTG) | polB ← | DNA polymerase II |
| RA | 65,046 | A→C | R245R (CGT→CGG) | polB ← | DNA polymerase II |
| RA | 65,057 | G→T | L242I (CTT→ATT) | polB ← | DNA polymerase II |
| RA | 65,169 | C→T | L204L (TTG→CTA) | polB ← | DNA polymerase II |
| RA | 65,171 | A→G | L204L (TTG→CTA) | polB ← | DNA polymerase II |
| RA | 65,202 | G→A | F193F (TTC→TTT) | polB ← | DNA polymerase II |
| RA | 65,208 | A→G | L191L (CTT→CTC) | polB ← | DNA polymerase II |
| RA | 65,213 | A→C | S190A (TCG→GCG) | polB ← | DNA polymerase II |
| RA | 65,232 | C→T | P183P (CCG→CCA) | polB ← | DNA polymerase II |
| RA | 65,316 | T→A | I155I (ATA→ATT) | polB ← | DNA polymerase II |
| RA | 65,381 | T→C | T134A (ACT→GCT) | polB ← | DNA polymerase II |
| RA | 65,454 | A→G | R109R (CGT→CGC) | polB ← | DNA polymerase II |
| RA | 65,594 | A→C | F63V (TTT→GTT) | polB ← | DNA polymerase II |
| RA | 65,785 | A→T | intergenic (‑5/+70) | polB ← / ← araD | DNA polymerase II/L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 65,788 | A→T | intergenic (‑8/+67) | polB ← / ← araD | DNA polymerase II/L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 65,811 | G→T | intergenic (‑31/+44) | polB ← / ← araD | DNA polymerase II/L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 65,905 | C→T | D216N (GAT→AAT) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,024 | Δ1 bp | coding (527/696 nt) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,032 | C→T | P173P (CCG→CCA) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,041 | G→A | S170S (TCC→TCT) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,053 | A→G | V166V (GTT→GTC) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,092 | A→G | F153F (TTT→TTC) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,134 | G→A | G139G (GGC→GGT) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,227 | A→G | G108G (GGT→GGC) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,245 | G→A | T102T (ACC→ACT) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,263 | C→T | T96T (ACG→ACA) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,266 | A→G | H95H (CAT→CAC) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,287 | G→C | P88P (CCC→CCG) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,308 | C→T | R81R (CGG→CGA) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,323 | G→A | D76D (GAC→GAT) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,343 | T→C | T70A (ACG→GCG) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,403 | C→T | V50I (GTC→ATC) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,494 | G→A | H19H (CAC→CAT) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,518 | T→C | E11E (GAA→GAG) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,686 | C→G | intergenic (‑136/+149) | araD ← / ← araA | L‑ribulose‑5‑phosphate 4‑epimerase AraD/L‑arabinose isomerase |
| RA | 66,688 | G→A | intergenic (‑138/+147) | araD ← / ← araA | L‑ribulose‑5‑phosphate 4‑epimerase AraD/L‑arabinose isomerase |
| RA | 66,784 | A→T | intergenic (‑234/+51) | araD ← / ← araA | L‑ribulose‑5‑phosphate 4‑epimerase AraD/L‑arabinose isomerase |
| RA | 66,819 | T→C | intergenic (‑269/+16) | araD ← / ← araA | L‑ribulose‑5‑phosphate 4‑epimerase AraD/L‑arabinose isomerase |
| RA | 66,823 | G→T | intergenic (‑273/+12) | araD ← / ← araA | L‑ribulose‑5‑phosphate 4‑epimerase AraD/L‑arabinose isomerase |
| RA | 66,830 | G→A | intergenic (‑280/+5) | araD ← / ← araA | L‑ribulose‑5‑phosphate 4‑epimerase AraD/L‑arabinose isomerase |
| RA | 66,847 | C→T | G497G (GGG→GGA) | araA ← | L‑arabinose isomerase |
| RA | 66,898 | T→G | T480T (ACA→ACC) | araA ← | L‑arabinose isomerase |
| RA | 66,901 | G→A | D479D (GAC→GAT) | araA ← | L‑arabinose isomerase |
| RA | 66,946 | T→C | Q464Q (CAA→CAG) | araA ← | L‑arabinose isomerase |
| RA | 66,970 | T→C | A456A (GCA→GCG) | araA ← | L‑arabinose isomerase |
| RA | 67,111 | G→A | C409C (TGC→TGT) | araA ← | L‑arabinose isomerase |
| RA | 67,123 | T→C | L405L (CTA→CTG) | araA ← | L‑arabinose isomerase |
| RA | 67,152 | A→G | L396L (TTG→CTG) | araA ← | L‑arabinose isomerase |
| RA | 67,171 | G→A | G389G (GGC→GGT) | araA ← | L‑arabinose isomerase |
| RA | 67,195 | G→T | R381R (CGC→CGA) | araA ← | L‑arabinose isomerase |
| RA | 67,259 | G→A | A360V (GCA→GTA) | araA ← | L‑arabinose isomerase |
| RA | 67,264 | G→A | I358I (ATC→ATT) | araA ← | L‑arabinose isomerase |
| RA | 67,405 | A→G | T311T (ACT→ACC) | araA ← | L‑arabinose isomerase |
| RA | 67,471 | A→T | P289P (CCT→CCA) | araA ← | L‑arabinose isomerase |
| RA | 67,596 | T→C | K248E (AAA→GAA) | araA ← | L‑arabinose isomerase |
| RA | 67,612 | G→T | A242A (GCC→GCA) | araA ← | L‑arabinose isomerase |
| RA | 67,759 | G→A | G193G (GGC→GGT) | araA ← | L‑arabinose isomerase |
| RA | 67,798 | T→A | R180R (CGA→CGT) | araA ← | L‑arabinose isomerase |
| RA | 67,834 | G→A | V168V (GTC→GTT) | araA ← | L‑arabinose isomerase |
| RA | 67,900 | C→G | V146V (GTG→GTC) | araA ← | L‑arabinose isomerase |
| RA | 68,236 | G→A | V34V (GTC→GTT) | araA ← | L‑arabinose isomerase |
| RA | 68,468 | C→T | E527E (GAG→GAA) | araB ← | ribulokinase |
| RA | 68,476 | A→G | C525R (TGC→CGC) | araB ← | ribulokinase |
| RA | 68,519 | A→G | A510A (GCT→GCC) | araB ← | ribulokinase |
| RA | 68,678 | T→C | A457A (GCA→GCG) | araB ← | ribulokinase |
| RA | 68,693 | A→G | V452V (GTT→GTC) | araB ← | ribulokinase |
| RA | 68,837 | C→T | P404P (CCG→CCA) | araB ← | ribulokinase |
| RA | 68,840 | T→C | T403S (ACA→TCG) | araB ← | ribulokinase |
| RA | 68,842 | T→A | T403S (ACA→TCG) | araB ← | ribulokinase |
| RA | 68,846 | G→A | R401R (CGC→CGT) | araB ← | ribulokinase |
| RA | 68,849 | G→A | G400G (GGC→GGT) | araB ← | ribulokinase |
| RA | 68,956 | T→C | T365A (ACG→GCG) | araB ← | ribulokinase |
| RA | 69,001 | C→T | G350S (GGC→AGC) | araB ← | ribulokinase |
| RA | 69,014 | A→G | F345F (TTT→TTC) | araB ← | ribulokinase |
| RA | 69,323 | A→G | T242T (ACT→ACC) | araB ← | ribulokinase |
| RA | 69,400 | G→A | L217L (CTG→TTG) | araB ← | ribulokinase |
| RA | 69,605 | A→G | G148G (GGT→GGC) | araB ← | ribulokinase |
| RA | 69,611 | G→A | Y146Y (TAC→TAT) | araB ← | ribulokinase |
| RA | 69,629 | G→A | N140N (AAC→AAT) | araB ← | ribulokinase |
| RA | 69,665 | Δ1 bp | coding (384/1701 nt) | araB ← | ribulokinase |
| RA | 69,672 | +T | coding (377/1701 nt) | araB ← | ribulokinase |
| RA | 69,752 | T→A | G99G (GGA→GGT) | araB ← | ribulokinase |
| RA | 69,935 | C→T | Q38Q (CAG→CAA) | araB ← | ribulokinase |
| RA | 69,981 | G→C | T23S (ACC→AGC) | araB ← | ribulokinase |
| RA | 69,983 | A→G | A22A (GCT→GCC) | araB ← | ribulokinase |
| RA | 70,289 | G→T | intergenic (‑241/‑98) | araB ← / → araC | ribulokinase/DNA‑binding transcriptional dual regulator AraC |
| RA | 70,371 | T→C | intergenic (‑323/‑16) | araB ← / → araC | ribulokinase/DNA‑binding transcriptional dual regulator AraC |
| RA | 70,434 | C→T | N16N (AAC→AAT) | araC → | DNA‑binding transcriptional dual regulator AraC |
| RA | 70,581 | C→T | V65V (GTC→GTT) | araC → | DNA‑binding transcriptional dual regulator AraC |
| RA | 70,740 | T→G | G118G (GGT→GGG) | araC → | DNA‑binding transcriptional dual regulator AraC |
| RA | 71,079 | C→T | R231R (CGC→CGT) | araC → | DNA‑binding transcriptional dual regulator AraC |
| RA | 71,082 | T→C | I232I (ATT→ATC) | araC → | DNA‑binding transcriptional dual regulator AraC |
| RA | 71,085 | T→C | S233S (AGT→AGC) | araC → | DNA‑binding transcriptional dual regulator AraC |
| RA | 71,109 | T→C | T241T (ACT→ACC) | araC → | DNA‑binding transcriptional dual regulator AraC |
| RA | 71,175 | A→G | R263R (CGA→CGG) | araC → | DNA‑binding transcriptional dual regulator AraC |
| RA | 71,214 | T→C | F276F (TTT→TTC) | araC → | DNA‑binding transcriptional dual regulator AraC |
| RA | 71,386 | C→T | S12S (TCC→TCT) | yabI → | DedA family protein YabI |
| RA | 71,543 | A→G | I65V (ATT→GTC) | yabI → | DedA family protein YabI |
| RA | 71,545 | T→C | I65V (ATT→GTC) | yabI → | DedA family protein YabI |
| RA | 71,548 | C→T | G66G (GGC→GGT) | yabI → | DedA family protein YabI |
| RA | 71,551 | 2 bp→TC | coding (201‑202/765 nt) | yabI → | DedA family protein YabI |
| RA | 71,555 | A→C | M69L (ATG→CTG) | yabI → | DedA family protein YabI |
| RA | 71,569 | T→C | I73I (ATT→ATC) | yabI → | DedA family protein YabI |
| RA | 71,572 | T→C | S74S (TCT→TCC) | yabI → | DedA family protein YabI |
| RA | 71,584 | T→C | G78G (GGT→GGC) | yabI → | DedA family protein YabI |
| RA | 71,639 | C→T | L97L (CTA→TTA) | yabI → | DedA family protein YabI |
| RA | 71,644 | T→C | L98L (CTT→CTC) | yabI → | DedA family protein YabI |
| RA | 71,701 | T→C | R117R (CGT→CGC) | yabI → | DedA family protein YabI |
| RA | 71,764 | T→A | A138A (GCT→GCA) | yabI → | DedA family protein YabI |
| RA | 71,770 | T→C | F140F (TTT→TTC) | yabI → | DedA family protein YabI |
| RA | 71,806 | G→A | P152P (CCG→CCA) | yabI → | DedA family protein YabI |
| RA | 71,824 | A→T | P158P (CCA→CCT) | yabI → | DedA family protein YabI |
| RA | 71,857 | T→A | P169P (CCT→CCA) | yabI → | DedA family protein YabI |
| RA | 71,875 | T→C | G175G (GGT→GGC) | yabI → | DedA family protein YabI |
| RA | 71,899 | A→G | A183A (GCA→GCG) | yabI → | DedA family protein YabI |
| RA | 71,902 | A→G | T184T (ACA→ACG) | yabI → | DedA family protein YabI |
| RA | 71,908 | G→A | V186V (GTG→GTA) | yabI → | DedA family protein YabI |
| RA | 71,912 | T→G | L188V (TTG→GTG) | yabI → | DedA family protein YabI |
| RA | 71,962 | G→A | A204A (GCG→GCA) | yabI → | DedA family protein YabI |
| RA | 71,965 | T→C | T205T (ACT→ACC) | yabI → | DedA family protein YabI |
| RA | 71,968 | C→T | D206D (GAC→GAT) | yabI → | DedA family protein YabI |
| RA | 71,974 | G→A | L208L (TTG→TTA) | yabI → | DedA family protein YabI |
| RA | 71,989 | C→G | S213S (TCC→TCG) | yabI → | DedA family protein YabI |
| RA | 71,995 | T→C | G215G (GGT→GGC) | yabI → | DedA family protein YabI |
| RA | 72,117 | A→G | intergenic (+2/+112) | yabI → / ← thiQ | DedA family protein YabI/thiamine ABC transporter ATP binding subunit |
| RA | 72,121 | A→T | intergenic (+6/+108) | yabI → / ← thiQ | DedA family protein YabI/thiamine ABC transporter ATP binding subunit |
| RA | 72,151 | 2 bp→GA | intergenic (+36/+77) | yabI → / ← thiQ | DedA family protein YabI/thiamine ABC transporter ATP binding subunit |
| RA | 72,183 | 2 bp→GT | intergenic (+68/+45) | yabI → / ← thiQ | DedA family protein YabI/thiamine ABC transporter ATP binding subunit |
| RA | 72,202 | C→T | intergenic (+87/+27) | yabI → / ← thiQ | DedA family protein YabI/thiamine ABC transporter ATP binding subunit |
| RA | 72,217 | C→T | intergenic (+102/+12) | yabI → / ← thiQ | DedA family protein YabI/thiamine ABC transporter ATP binding subunit |
| RA | 72,253 | C→T | S225S (TCG→TCA) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,290 | A→T | M213K (ATG→AAG) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,322 | T→C | V202V (GTA→GTG) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,325 | T→C | V201V (GTA→GTG) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,349 | C→G | A193A (GCG→GCC) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,361 | G→A | S189S (AGC→AGT) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,367 | C→T | S187S (TCG→TCA) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,381 | G→A | L183L (CTA→TTA) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,423 | A→G | L169L (TTG→CTG) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,493 | T→C | V145V (GTA→GTG) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,517 | T→G | R137R (CGA→CGC) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,547 | C→A | P127P (CCG→CCT) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,605 | C→T | G108E (GGG→GAG) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,614 | A→G | V105A (GTA→GCA) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,661 | T→C | A89A (GCA→GCG) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,676 | G→A | S84S (AGC→AGT) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,691 | C→T | E79E (GAG→GAA) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,731 | A→G | M66T (ATG→ACG) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,733 | A→C | T65T (ACT→ACG) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,736 | T→G | T64T (ACA→ACC) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,745 | T→A | V61V (GTA→GTT) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,751 | A→G | D59D (GAT→GAC) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,799 | A→G | N43N (AAT→AAC) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,820 | C→T | A36A (GCG→GCA) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,862 | C→T | V22V (GTG→GTA) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,892 | G→T | H12Q (CAC→CAA) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,928 | T→C | N532D (AAT→GAT) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 72,974 | C→T | L516L (CTG→CTA) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,001 | A→G | G507G (GGT→GGC) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,115 | T→G | A469A (GCA→GCC) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,121 | G→A | A467A (GCC→GCT) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,163 | C→G | V453V (GTG→GTC) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,178 | T→C | S448S (TCA→TCG) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,193 | C→G | G443G (GGG→GGC) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,208 | T→C | L438L (TTA→TTG) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,214 | G→A | S436S (AGC→AGT) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,253 | C→T | V423V (GTG→GTA) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,319 | T→C | P401P (CCA→CCG) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,328 | G→A | I398I (ATC→ATT) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,331 | A→G | T397T (ACT→ACC) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,413 | A→G | V370A (GTG→GCG) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,445 | C→A | L359L (CTG→CTT) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,582 | C→G | V314L (GTA→CTA) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,604 | T→C | L306L (TTA→TTG) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,712 | G→T | P270P (CCC→CCA) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,744 | A→G | L260L (TTG→CTG) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,753 | G→A | L257L (CTG→TTG) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,763 | G→A | C253C (TGC→TGT) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,777 | G→T | L249I (CTC→ATC) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,790 | T→C | A244A (GCA→GCG) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,853 | C→T | A223A (GCG→GCA) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,868 | C→G | G218G (GGG→GGC) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,919 | C→T | A201A (GCG→GCA) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,984 | 2 bp→CG | coding (537‑538/1611 nt) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 74,009 | T→C | Q171Q (CAA→CAG) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 74,015 | C→T | Q169Q (CAG→CAA) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 74,027 | G→A | I165I (ATC→ATT) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 74,069 | C→T | L151L (CTG→CTA) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 74,081 | C→T | V147V (GTG→GTA) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 74,084 | A→G | H146H (CAT→CAC) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 74,087 | G→C | A145A (GCC→GCG) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 74,204 | G→A | V106V (GTC→GTT) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 74,209 | A→G | L105L (TTG→CTG) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 74,222 | C→T | L100L (TTG→TTA) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 74,234 | A→G | C96C (TGT→TGC) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 74,308 | T→C | I72V (ATA→GTA) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 74,321 | T→C | A67A (GCA→GCG) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 75,707 | C→T | L531L (CTG→CTA) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,752 | 2 bp→G | coding (1547‑1548/1656 nt) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,758 | 1 bp→GC | coding (1542/1656 nt) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,767 | C→T | A511A (GCG→GCA) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,806 | A→G | N498N (AAT→AAC) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,812 | C→T | E496E (GAG→GAA) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,830 | A→G | A490A (GCT→GCC) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,833 | A→G | A489A (GCT→GCC) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,851 | A→G | I483I (ATT→ATC) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,854 | G→C | P482P (CCC→CCG) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,860 | G→A | C480C (TGC→TGT) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,863 | A→G | H479H (CAT→CAC) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,869 | T→G | L477L (CTA→CTC) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,875 | T→C | P475P (CCA→CCG) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,881 | T→C | E473E (GAA→GAG) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,887 | T→C | L471L (TTA→TTG) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,890 | A→G | H470H (CAT→CAC) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,893 | T→C | A469A (GCA→GCG) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,899 | A→C | V467V (GTT→GTG) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,901 | 2 bp→GC | coding (1398‑1399/1656 nt) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,905 | G→A | F465F (TTC→TTT) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,908 | G→A | D464D (GAC→GAT) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,920 | G→C | T460T (ACC→ACG) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,938 | T→A | L454L (CTA→CTT) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,950 | A→G | S450S (AGT→AGC) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,953 | T→C | E449E (GAA→GAG) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,966 | 2 bp→TC | coding (1333‑1334/1656 nt) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,984 | 2 bp→CT | coding (1315‑1316/1656 nt) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 76,000 | T→C | K434E (AAA→GAA) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 76,082 | T→C | L406L (CTA→CTG) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 76,086 | G→A | T405I (ACC→ATC) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 76,283 | C→T | L339L (CTG→CTA) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 76,334 | G→A | G322G (GGC→GGT) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 76,358 | C→A | G314G (GGG→GGT) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 76,364 | G→A | A312A (GCC→GCT) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 76,478 | A→G | I274I (ATT→ATC) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 76,576 | G→A | L242L (CTG→TTG) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 76,700 | A→G | D200D (GAT→GAC) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 76,727 | G→A | H191H (CAC→CAT) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 76,775 | A→T | I175I (ATT→ATA) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 76,862 | G→A | I146I (ATC→ATT) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 77,021 | C→T | L93L (CTG→CTA) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 77,027 | A→G | D91D (GAT→GAC) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 77,117 | G→A | R61R (CGC→CGT) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 77,776 | C→A | G52G (GGC→GGA) | setA → | sugar exporter SetA |
| RA | 78,406 | A→T | G262G (GGA→GGT) | setA → | sugar exporter SetA |
| RA | 78,520 | C→A | F300L (TTC→TTA) | setA → | sugar exporter SetA |
| RA | 78,524 | A→C | N302H (AAT→CAT) | setA → | sugar exporter SetA |
| RA | 78,533 | A→C | M305L (ATG→CTG) | setA → | sugar exporter SetA |
| RA | 78,761 | G→A | V381I (GTC→ATC) | setA → | sugar exporter SetA |
| RA | 79,040 | A→G | A138A (GCT→GCC) | leuD ← | 3‑isopropylmalate dehydratase subunit LeuD |
| RA | 80,529 | C→G | G112G (GGG→GGC) | leuC ← | 3‑isopropylmalate dehydratase subunit LeuC |
| RA | 82,633 | T→G | I299I (ATA→ATC) | leuA ← | 2‑isopropylmalate synthase |
| RA | 82,894 | T→G | G212G (GGA→GGC) | leuA ← | 2‑isopropylmalate synthase |
| RA | 82,909 | C→T | L207L (TTG→TTA) | leuA ← | 2‑isopropylmalate synthase |
| RA | 82,933 | G→A | I199I (ATC→ATT) | leuA ← | 2‑isopropylmalate synthase |
| RA | 82,957 | C→T | V191V (GTG→GTA) | leuA ← | 2‑isopropylmalate synthase |
| RA | 83,179 | C→T | E117E (GAG→GAA) | leuA ← | 2‑isopropylmalate synthase |
| RA | 83,182 | G→A | D116D (GAC→GAT) | leuA ← | 2‑isopropylmalate synthase |
| RA | 83,296 | T→C | E78E (GAA→GAG) | leuA ← | 2‑isopropylmalate synthase |
| RA | 83,317 | A→G | C71C (TGT→TGC) | leuA ← | 2‑isopropylmalate synthase |
| RA | 83,344 | G→A | A62A (GCC→GCT) | leuA ← | 2‑isopropylmalate synthase |
| RA | 83,359 | C→T | S57S (TCG→TCA) | leuA ← | 2‑isopropylmalate synthase |
| RA | 83,371 | G→A | G53G (GGC→GGT) | leuA ← | 2‑isopropylmalate synthase |
| RA | 83,383 | G→A | V49V (GTC→GTT) | leuA ← | 2‑isopropylmalate synthase |
| RA | 84,251 | G→T | intergenic (‑543/‑117) | leuL ← / → leuO | leu operon leader peptide/DNA‑binding transcriptional dual regulator LeuO |
| RA | 84,267 | G→C | intergenic (‑559/‑101) | leuL ← / → leuO | leu operon leader peptide/DNA‑binding transcriptional dual regulator LeuO |
| RA | 84,305 | 2 bp→CG | intergenic (‑597/‑62) | leuL ← / → leuO | leu operon leader peptide/DNA‑binding transcriptional dual regulator LeuO |
| RA | 84,415 | A→G | K16K (AAA→AAG) | leuO → | DNA‑binding transcriptional dual regulator LeuO |
| RA | 85,481 | T→C | R11G (AGA→GGA) | yabR ← | protein YabR |
| RA | 86,241 | A→G | V204V (GTA→GTG) | ilvI → | acetolactate synthase/acetohydroxybutanoate synthase, catalytic subunit |
| RA | 86,271 | C→T | G214G (GGC→GGT) | ilvI → | acetolactate synthase/acetohydroxybutanoate synthase, catalytic subunit |
| RA | 86,315 | C→T | T229M (ACG→ATG) | ilvI → | acetolactate synthase/acetohydroxybutanoate synthase, catalytic subunit |
| RA | 86,345 | G→C | C239S (TGC→TCC) | ilvI → | acetolactate synthase/acetohydroxybutanoate synthase, catalytic subunit |
| RA | 86,658 | A→G | P343P (CCA→CCG) | ilvI → | acetolactate synthase/acetohydroxybutanoate synthase, catalytic subunit |
| RA | 87,410 | C→T | R18R (CGC→CGT) | ilvH → | acetolactate synthase/acetohydroxybutanoate synthase, regulatory subunit |
| RA | 89,089 | C→A | intergenic (+57/‑545) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,103 | G→C | intergenic (+71/‑531) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,143 | A→G | intergenic (+111/‑491) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,145 | G→T | intergenic (+113/‑489) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,239 | G→A | intergenic (+207/‑395) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,241 | C→A | intergenic (+209/‑393) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,263 | A→G | intergenic (+231/‑371) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,316 | T→C | intergenic (+284/‑318) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,321 | A→G | intergenic (+289/‑313) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,471 | T→G | intergenic (+439/‑163) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,570 | A→C | intergenic (+538/‑64) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,699 | T→C | Y22Y (TAT→TAC) | mraZ → | DNA‑binding transcriptional repressor MraZ |
| RA | 89,754 | T→C | Y41H (TAT→CAT) | mraZ → | DNA‑binding transcriptional repressor MraZ |
| RA | 90,432 | A→G | E113E (GAA→GAG) | rsmH → | 16S rRNA m(4)C1402 methyltransferase |
| RA | 90,435 | T→C | R114R (CGT→CGC) | rsmH → | 16S rRNA m(4)C1402 methyltransferase |
| RA | 91,904 | G→A | E164E (GAG→GAA) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 91,916 | C→T | Y168Y (TAC→TAT) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 91,922 | G→A | P170P (CCG→CCA) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 91,949 | C→T | I179I (ATC→ATT) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 92,096 | A→T | A228A (GCA→GCT) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 92,162 | C→T | N250N (AAC→AAT) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 92,327 | G→T | P305P (CCG→CCT) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 92,354 | A→G | V314V (GTA→GTG) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 92,687 | A→G | P425P (CCA→CCG) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 92,810 | T→C | T466T (ACT→ACC) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 92,843 | A→G | P477P (CCA→CCG) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 94,278 | G→A | A371A (GCG→GCA) | murE → | UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase |
| RA | 134,256 | G→T | intergenic (+44/‑132) | acnB → / → yacL | AcnB/PF06062 family protein YacL |
| RA | 246,747 | G→T | S12S (TCG→TCT) | yafL → | NlpC/P60 family protein YafL |
| RA | 480,295 | 2 bp→AA | coding (13‑14/219 nt) | hha ← | hemolysin expression‑modulating protein Hha |
| RA | 690,948 | G→A | V279V (GTC→GTT) | ybeX ← | CorC‑HlyC family protein YbeX |
| RA | 700,038 | G→A | H97Y (CAT→TAT) | umpH ← | UMP phosphatase |
| RA | 809,217 | 2 bp→AG | coding (40‑41/1290 nt) | bioA ← | adenosylmethionine‑8‑amino‑7‑oxononanoate aminotransferase |
| RA | 968,837 | G→A | D158N (GAT→AAT) | lpxK → | tetraacyldisaccharide 4'‑kinase |
| RA | 1,040,126 | G→T | L277L (CTG→CTT) | appB → | cytochrome bd‑II subunit 2 |
| RA | 1,041,585 | C→T | A323A (GCC→GCT) | appA → | periplasmic phosphoanhydride phosphatase/multiple inositol‑polyphosphate phosphatase |
| RA | 1,061,935 | G→A | S46N (AGC→AAC) | torD → | trimethylamine‑N‑oxide reductase‑specific chaperone |
| RA | 1,062,188 | C→T | L130L (CTC→CTT) | torD → | trimethylamine‑N‑oxide reductase‑specific chaperone |
| RA | 1,086,443 | C→T | W26* (TGG→TAG) | pgaD ← | poly‑N‑acetyl‑D‑glucosamine synthase subunit PgaD |
| RA | 1,111,727 | 2 bp→TT | coding (865‑866/2544 nt) | opgH → | osmoregulated periplasmic glucans biosynthesis protein H |
| RA | 1,169,836 | A→G | L180P (CTG→CCG) | ldtC ← | L,D‑transpeptidase LdtC |
| RA | 1,189,980 | A→G | T156T (ACT→ACC) | phoP ← | DNA‑binding transcriptional dual regulator PhoP |
| RA | 1,196,220 | C→T | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,232 | C→T | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,245 | T→C | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,247 | A→G | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,277 | C→T | N385N (AAC→AAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,280 | G→C | A386A (GCG→GCC) | icd → | isocitrate dehydrogenase |
| RA | 1,196,283 | A→G | K387K (AAA→AAG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,292 | C→T | T390T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,304 | G→A | E394E (GAG→GAA) | icd → | isocitrate dehydrogenase |
| RA | 1,196,316 | T→A | D398E (GAT→GAA) | icd → | isocitrate dehydrogenase |
| RA | 1,196,325 | A→G | K401K (AAA→AAG) | icd → | isocitrate dehydrogenase |
| RA | 1,242,609 | C→T | E158K (GAA→AAA) | ldcA ← | murein tetrapeptide carboxypeptidase |
| RA | 1,301,992 | A→T | N271Y (AAT→TAT) | oppA → | oligopeptide ABC transporter periplasmic binding protein |
| JC JC | 1,303,314 | IS186 (+) +6 bp :: Δ1 bp | coding (416‑421/921 nt) | oppB → | murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppB |
| RA | 1,306,736 | T→G | S325A (TCC→GCC) | oppF → | murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppF |
| RA | 1,310,770 | A→G | H32H (CAT→CAC) | yciI ← | protein YciI |
| RA | 1,337,394 | A→G | S522G (AGC→GGC) | acnA → | aconitate hydratase 1 |
| RA | 1,357,202 | C→T | intergenic (‑92/+221) | sapA ← / ← ymjA | putative periplasmic binding protein SapA/DUF2543 domain‑containing protein YmjA |
| RA | 1,358,859 | T→C | Y110C (TAT→TGT) | puuP ← | putrescine:H(+) symporter PuuP |
| JC JC | 1,399,590 | IS5 (+) +4 bp | intergenic (‑64/+128) | fnr ← / ← ogt | DNA‑binding transcriptional dual regulator FNR/methylated‑DNA‑‑[protein]‑cysteine S‑methyltransferase |
| RA | 1,449,738 | C→T | D538N (GAC→AAC) | tynA ← | copper‑containing amine oxidase |
| RA | 1,475,514 | A→G | D124G (GAT→GGT) | ydbD → | DUF2773 domain‑containing protein YdbD |
| RA | 1,643,679 | A→T | L209Q (CTG→CAG) | ydfU ← | protein YdfU |
| RA | 1,652,331 | T→C | intergenic (+2346/+397) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| RA | 1,721,136 | C→T | L38F (CTT→TTT) | ydhI → | DUF1656 domain‑containing protein YdhI |
| RA | 1,776,715 | A→T | S377C (AGT→TGT) | ydiF → | putative acetate‑CoA transferase YdiF |
| RA | 1,894,839 | T→C | L12P (CTC→CCC) | pabB → | aminodeoxychorismate synthase subunit 1 |
| JC JC | 1,907,577 | IS1 (–) +8 bp | coding (8‑15/144 nt) | yobF ← | DUF2527 domain‑containing protein YobF |
| RA | 1,978,083 | +A | coding (115/351 nt) | flhD ← | DNA‑binding transcriptional dual regulator FlhD |
| RA | 1,987,499 | C→A | intergenic (+71/+8) | ftnB → / ← yecJ | putative ferritin‑like protein/DUF2766 domain‑containing protein YecJ |
| RA | 2,027,332 | T→A | E229V (GAA→GTA) | dgcQ ← | diguanylate cyclase DgcQ |
| RA | 2,040,433 | C→A | A319D (GCC→GAC) | msrP → | protein‑L‑methionine sulfoxide reductase catalytic subunit MsrP |
| RA | 2,041,278 | G→A | intergenic (+160/‑97) | msrQ → / → zinT | membrane‑bound flavocytochrome MsrQ/metal‑binding protein ZinT |
| RA | 2,052,885 | G→A | intergenic (+871/‑758) | yeeJ → / → shiA | inverse autotransporter adhesin/shikimate:H(+) symporter |
| RA | 2,099,525 | A→T | I30N (ATT→AAT) | ugd ← | UDP‑glucose 6‑dehydrogenase |
| RA | 2,111,259 | Δ1 bp | coding (718/900 nt) | rfbD ← | dTDP‑4‑dehydrorhamnose reductase |
| RA | 2,125,037 | G→A | S237F (TCC→TTC) | wcaI ← | colanic acid biosynthesis fucosyltransferase WcaI |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 2,188,087 | T→C | T110A (ACG→GCG) | yehA ← | putative fimbrial adhesin YehA |
| MC JC | 2,262,279 | Δ6,678 bp | [fruK]–[lpxT] | [fruK], fruB, setB, yeiW, yeiP, yeiQ, yeiR, [lpxT] | |
| RA | 2,339,173 | G→A | S83L (TCG→TTG) | gyrA ← | DNA gyrase subunit A |
| RA | 2,384,808 | C→T | K305K (AAG→AAA) | yfbK ← | IPR002035/DUF3520 domain‑containing protein YfbK |
| RA | 2,410,419 | G→A | L312L (CTG→TTG) | yfbS ← | putative transporter YfbS |
| RA | 2,481,400 | T→A | S259S (TCA→TCT) | emrY ← | tripartite efflux pump membrane subunit EmrY |
| RA | 2,484,827 | C→T | L152F (CTT→TTT) | evgS → | sensor histidine kinase EvgS |
| RA | 2,579,943 | G→A | G103D (GGC→GAC) | tktB → | transketolase 2 |
| JC JC | 2,913,392 | IS2 (–) +5 bp | coding (256‑260/2235 nt) | relA ← | GDP/GTP pyrophosphokinase |
| RA | 2,926,292 | C→T | intergenic (+96/‑16) | queF → / → ppnN | 7‑cyano‑7‑deazaguanine reductase/nucleotide 5'‑monophosphate nucleosidase |
| RA | 3,088,010 | 2 bp→TT | intergenic (+150/‑273) | metK → / → galP | methionine adenosyltransferase/galactose:H(+) symporter |
| RA | 3,223,646 | C→T | G338G (GGC→GGT) | ebgA → | evolved beta‑D‑galactosidase subunit alpha |
| RA | 3,336,411 | 2 bp→AT | coding (83‑84/1260 nt) | murA ← | UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase |
| RA | 3,388,041 | T→G | T50P (ACG→CCG) | aaeB ← | aromatic carboxylic acid efflux pump subunit AaeB |
| JC JC | 3,429,986 | IS3 (–) +5 bp :: +T | coding (34‑38/258 nt) | yrdB ← | DUF1488 domain‑containing protein YrdB |
| RA | 3,474,425 | T→C | K43R (AAA→AGA) | rpsL ← | 30S ribosomal subunit protein S12 |
| RA | 3,486,175 | G→A | C19Y (TGC→TAC) | crp → | DNA‑binding transcriptional dual regulator CRP |
| RA | 3,486,502 | C→T | T128I (ACT→ATT) | crp → | DNA‑binding transcriptional dual regulator CRP |
| JC JC | 3,546,574 | IS2 (+) +5 bp | coding (16‑20/1317 nt) | gntT → | high‑affinity gluconate transporter |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,629,921 | C→T | E228K (GAG→AAG) | yhiI ← | putative membrane fusion protein YhiI |
| RA | 3,682,515 | C→T | M311I (ATG→ATA) | dctA ← | C4 dicarboxylate/orotate:H(+) symporter |
| RA | 3,707,947 | C→A | intergenic (‑242/+669) | dppA ← / ← proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| RA | 3,725,176 | T→G | E48A (GAG→GCG) | glyQ ← | glycine‑‑tRNA ligase subunit alpha |
| RA | 3,761,230 | G→A | S7F (TCC→TTC) | selA ← | selenocysteine synthase |
| RA | 3,771,979 | G→T | intergenic (‑235/‑302) | yibI ← / → mtlA | DUF3302 domain‑containing protein YibI/mannitol‑specific PTS enzyme IICBA component |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| JC | 3,822,651 | (CAGGAT)1→2 | coding (252/2109 nt) | spoT → | bifunctional (p)ppGpp synthase/hydrolase SpoT |
| RA | 3,823,162 | C→T | H255Y (CAC→TAC) | spoT → | bifunctional (p)ppGpp synthase/hydrolase SpoT |
| RA | 3,869,637 | C→A | L87L (CTC→CTA) | cbrA → | colicin M resistance protein |
| RA | 3,878,536 | G→A | Y528Y (TAC→TAT) | gyrB ← | DNA gyrase subunit B |
| RA | 3,906,764 | G→A | intergenic (‑197/+89) | bglG ← / ← phoU | transcriptional antiterminator BglG/negative regulator of the pho regulon |
| RA | 3,925,200 | T→C | K145R (AAG→AGG) | mnmG ← | 5‑carboxymethylaminomethyluridine‑tRNA synthase subunit MnmG |
| RA | 3,926,991 | G→A | L5L (CTG→TTG) | asnC ← | DNA‑binding transcriptional dual regulator AsnC |
| RA | 3,966,530 | 2 bp→TT | coding (114‑115/1260 nt) | rho → | transcription termination factor Rho |
| RA | 4,003,502 | G→T | P226Q (CCG→CAG) | rarD ← | putative transporter RarD |
| RA | 4,015,220 | A→C | N723T (AAC→ACC) | metE → | cobalamin‑independent homocysteine transmethylase |
| RA | 4,015,225 | G→T | D725Y (GAC→TAC) | metE → | cobalamin‑independent homocysteine transmethylase |
| RA | 4,084,903 | T→G | N307T (AAC→ACC) | fdoG ← | formate dehydrogenase O subunit alpha |
| RA | 4,092,703 | A→G | F41L (TTC→CTC) | frvA ← | putative PTS enzyme IIA component FrvA |
| RA | 4,113,851 | G→A | H208Y (CAT→TAT) | fpr ← | flavodoxin/ferredoxin‑NADP(+) reductase |
| RA | 4,143,377 | C→T | S283L (TCA→TTA) | frwC → | putative PTS enzyme IIC component FrwC |
| RA | 4,161,248 | G→T | G61V (GGC→GTC) | fabR → | DNA‑binding transcriptional repressor FabR |
| RA | 4,164,123 | C→G | A162G (GCA→GGA) | btuB → | cobalamin outer membrane transporter |
| RA | 4,215,347 | T→A | intergenic (+138/‑131) | metA → / → aceB | homoserine O‑succinyltransferase/malate synthase A |
| RA | 4,223,638 | T→C | intergenic (‑10/‑190) | iclR ← / → metH | DNA‑binding transcriptional repressor IclR/cobalamin‑dependent methionine synthase |
| RA | 4,282,332 | (A)5→6 | coding (744/1293 nt) | yjcF ← | pentapeptide repeat‑containing protein YjcF |
| RA | 4,293,781 | 2 bp→AT | coding (239‑240/597 nt) | nrfG → | putative formate‑dependent nitrite reductase complex subunit NrfG |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,325,644 | C→T | S33N (AGC→AAC) | yjdN ← | PF06983 family protein YjdN |
| RA | 4,392,997 | G→A | V357V (GTC→GTT) | queG ← | epoxyqueuosine reductase |
| RA | 4,393,552 | G→A | F172F (TTC→TTT) | queG ← | epoxyqueuosine reductase |
| RA | 4,396,373 | C→T | T103T (ACC→ACT) | amiB → | N‑acetylmuramoyl‑L‑alanine amidase B |
| RA | 4,396,772 | T→C | F236F (TTT→TTC) | amiB → | N‑acetylmuramoyl‑L‑alanine amidase B |
| RA | 4,473,900 | C→T | G52R (GGA→AGA) | bdcA ← | c‑di‑GMP‑binding biofilm dispersal mediator protein |
| RA | 4,475,493 | T→C | F19F (TTT→TTC) | yjgL → | protein YjgL |
| RA | 4,508,810 | C→T | intergenic (‑193/‑199) | insI3 ← / → insO | IS30 family transposase/IS911B regulator fragment |
| RA | 4,510,238 | T→G | intergenic (+445/+452) | insO → / ← fecE | IS911B regulator fragment/ferric citrate ABC transporter ATP binding subunit |
| RA | 4,556,486 | C→T | intergenic (‑166/‑88) | yjiC ← / → ytiC | DUF2686 domain‑containing protein YjiC/protein YtiC |
| RA | 4,561,368 | C→T | P147S (CCG→TCG) | kptA → | RNA 2'‑phosphotransferase |
| RA | 4,563,778 | (G)6→5 | coding (148/258 nt) | ytiA ← | uncharacterized protein YtiA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 275509 | 315228 | 39720 | 67 [0] | [1] 68 | [mmuP]–ykgR | [mmuP],mmuM,afuC,insB2,insA2,yagB,yagA,yagE,yagF,yagG,yagH,xynR,argF,argL,ykgS,insB3,insA3,yagJ,yagK,yagL,yagM,ykgV,yagN,intF,yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,matA,ykgL,ykgO,ykgM,ykgR |
| * | * | ÷ | NC_000913 | 315447–316482 | 372748 | 56267–57302 | 15 [14] | [3] 71 | [insE1]–[mhpD] | [insE1],insF1,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH,betA,betB,betI,betT,yahV,pdeL,yahB,yahC,yahD,yahE,yahF,yahG,yahH,yahI,yahJ,yahK,yahL,yahM,yahN,yahO,prpR,prpB,prpC,prpD,prpE,codB,codA,cynR,cynT,cynS,cynX,lacA,lacY,lacZ,lacI,mhpR,mhpA,mhpB,mhpC,[mhpD] |
| * | * | ÷ | NC_000913 | 1196346 | 1211450 | 15105 | 15 [14] | [14] 15 | [icd]–mcrA | [icd],C0293,ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,ymfN,ymfR,beeE,ymfQ,ycfK,tfaP,tfaE,pinE,mcrA |
| * | * | ÷ | NC_000913 | 1978495 | 1979270–1978503 | 9–776 | 67 [0] | [0] 49 | insB5–insA5 | insB5,insA5 |
| * | * | ÷ | NC_000913 | 2290469 | 2320312 | 29844 | 15 [13] | [14] 15 | narP–[atoS] | narP,ccmH,ccmG,ccmF,ccmE,ccmD,ccmC,ccmB,ccmA,napC,napB,napH,napG,napA,napD,napF,yojO,eco,mqo,yojI,alkB,ada,ftp,ompC,micF,rcsD,rcsB,rcsC,[atoS] |
| * | * | ÷ | NC_000913 | 3423872–3424234 | 3424434–3424238 | 5–563 | 15 [14] | [13] 15 | [rrlD] | [rrlD] |
| * | * | ÷ | NC_000913 | 3708466 | 3708539 | 74 | 15 [13] | [14] 15 | dppA/proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| * | * | ÷ | NC_000913 | 4541024 | 4542041 | 1018 | 73 [0] | [1] 84 | [fimB]–[fimE] | [fimB],[fimE] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 257907 | 1 (0.010) | 65 (0.770) | 60/470 | 0.4 | 99.3% | intergenic (+8/+16) | crl/insB9 | RNA polymerase holoenzyme assembly factor Crl/IS1 family transposase B |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | RNA polymerase holoenzyme assembly factor Crl | |||||
| * | ? | NC_000913 | = 275508 | 0 (0.000) | 67 (0.800) | 60/466 | 0.4 | 100% | coding (184/1404 nt) | mmuP | S‑methyl‑L‑methionine transporter |
| ? | NC_000913 | 372749 = | 0 (0.000) | coding (635/810 nt) | mhpD | 2‑hydroxypentadienoate hydratase | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 42 (0.490) | 42/478 | 1.0 | 100% | intergenic (+253/‑69) | ychE/insH21 | MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1397238 | NA (NA) | 67 (0.760) | 61/486 | 0.4 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1978494 | 0 (0.000) | intergenic (‑297/+24) | flhD/insB5 | DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB | |||||
| * | ? | NC_000913 | = 1979270 | NA (NA) | 73 (0.830) | 67/486 | 0.3 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 4541023 | 0 (0.000) | coding (67/603 nt) | fimB | Type 1 fimbriae regulatory protein FimB | |||||
| * | ? | NC_000913 | 1979271 = | 0 (0.000) | 47 (0.530) | 42/486 | 1.0 | 100% | intergenic (‑56/‑482) | insA5/uspC | IS1 family protein InsA/universal stress protein C |
| ? | NC_000913 | = 2102947 | NA (NA) | pseudogene (443/446 nt) | wbbL | interrupted rhamnosyltransferase WbbL | |||||
| * | ? | NC_000913 | = 3584195 | NA (NA) | 83 (0.940) | 74/486 | 0.2 | 98.8% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 4542042 = | 1 (0.010) | coding (6/597 nt) | fimE | regulator for fimA | |||||