New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	891857 =	82 (0.720)	19 (0.170)	14/598	6.4	18.8%	coding (674/723 nt)	nfsA	NADPH‑dependent nitro/quinone reductase NfsA
	?	NC_000913	1469296 =	NA (NA)					noncoding (1/1221 nt)	IS30	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAATGGGGTAACTTGCGGCCTTTGTAGTGAATAGAAGACGCCGCAGGATTTATGTTCATGTAGCAAGAAAGCGGATCAAGAATTTCAACCAGGTGACCGCGCTGTATAGCGGCTTCACGCAGCCGCTTACACGAATAGAGCGTTCCATCCCGGGACAATATGGCAATTTTCACCCTGCACCTCTCTGTCAGACCTGGTCAAAAGCCCGCGTATCATACATCGACGTGGCGGTTTTAGCGCGTCGCCCAACCCTGTTTGTGCAAATAATCCAGAATAAATGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/892139‑891857 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGACACTGTCTGAGCGCGAGGAGATACGAGCTGGTTTGTCAGCCAAAATGAGCATT  >  NC_000913/1469296‑1469588                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AAATGGGGTAACTTGCGGCCTTTGTAGTGAATAGAAGACGCCGCAGGATTTATGTTCATGTAGCAAGAAAGCGGATCAAGAATTTCAACCAGGTGACCGCGCTGTATAGCGGCTTCACGCAGCCGCTTACACGAATAGAGCGTTCCATCCAGGGACAATATGGCAATTTTCAACCTGCACCTCTCTGTCAGACCTGGTCAAAAGCCCGCGTATCATACATCGACGTGGCGGTTTTAGCGCGTCGCCCAACCCTGTTTGTGCAAATAATCCAGAATAAATGGGCTGTAGATTCAATTGGTC                                                                                                                                                                                                                                                                                      >  1:152934/1‑300      GGGTAACTTGCGGCCTTTGTAGTGAATAGAAGACGCCGCAGGATTTATGTTCATGTAGCAAGAAAGCGGATCAAGAATTTCAACCAGGTGACCGCGCTGTATAGCGGCTTCACGCAGCCGCTTACACGAATAGAGCGTTCCATCCCGGGACAATATGGCAATTTTCACCCTGCACCTCTCTGTCAGACCTGGTCAAAAGCCCGCGTATCATACATCGACTTGGCGGTTTTAGCGCGTCGCCCAACCCTGTTTGTGCAAATAATCCAGAATAAATGGGCTGTAGATTCAATTGGTCAACGC                                                                                                                                                                                                                                                                                 >  1:704085/1‑300           ACTTGCGGCCTTTGTAGTGAATAGAAGACGCCGCAGGATTTATGTTCATGTAGCAAGAAAGCGGATCAAGAATTTCAACCAGGTTACCGCGCTGTATAGCGGCTTCACGCAGCCGCTTACACGAATAGAGCGTTCCATCCCTGGACAATATGGCAATTTTCACCCTGCACCTCTCTGTCAGACCTGGTCAAAAGCCCGCGTATCATACATCGACGTGGCGGTTTTAGCGCGTCGCCCAACCCTGTTTGTGCAAATAATCCAGAATAAATGGGCTGTAGATTCAATTGGTCAACGCAACAG                                                                                                                                                                                                                                                                            <  2:499945/300‑1           ACTTGCGGCCTTTGTAGTGAATAGAAGACGCCGCAGGATTTATGTTCATGTAGCAAGAAAGCGGATCAAGAATTTCAACCAGGTGACCGCGCTGTATAGCGGCTTCACGCAGCCGCTTACACGAATAGAGCGTTCCATCCCGGGACAATATGGCAATTTTCACCCTGCACCTCTCTGTCAGACCTGGTCAAAAGCCCGCGTATCATACATCGACGTGGCGGTTTTAGCGCGTCGCCCAACCCTGTTTGTGCAAATAATCCAGAATAAATGGGCTGTAGATTCAATTGGTCAACGCAACAG                                                                                                                                                                                                                                                                            <  1:816074/300‑1                                                          ATGTAGCAAGAAAGCGGATCAAGAATTTCAACCAGGTGACCGCGCTGTATAGCGNCTTCACGCAGCCGCTTACACGAATAGAGCGTTCCATCCCGGGACAATATGGCAATTTTCACCCTGCACCTCTCTGTCAGACCTGGTCAAAAGCCCGCGTATCATACATCGACTTGGCGGTTTTAGCGCGTCGCCCAACCCTGTTTGTGCAAATAATCCAGAATAAATGGGCTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACA                                                                                                                                                                                                                             <  2:691194/300‑1                                                                                                        GTATAGCGGCTTCACGCAGCCGCTTACACGAATAGAGCGTTCCATCCCGGGACAATATGGCAATTTTCACCCTGCACCTCTCTGTCAGACCTGGTCAAAAGCCCGCGTATCATACATCGACGTGGCGGTTTTAGCGCGTCGCCCAACCCTGTTTGTGCAAATAATCCAGAATAAATGGGCTGTAGATTCANTTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACG                                                                                                                                                                               >  1:676728/1‑300                                                                                                               gcgagatgtgtataagagacagGAATAGAGCGTTCCATCCCGGGACAATATGGCAATTTTCACCCTGCACCTCTCTGTCAGACCTGGTCAAAAGCCCGCGTATCATACATCGACGTGGCGGTTTTAGCGCGTCGCCCAACCCTGTTTGTGCAAATAATCCAGAATAAATGGGCTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGACCGGAACAGG                                                                                                                                                                        >  1:461956/23‑300                                                                                                                                           AGCGTTCCATCCCGGGACAATATGGCAATTTTCACCCTGCACCTCTCTGTCAGACCTGGTCAAAAGCCCGCGTATCATACATCGACGTGGCGGTTTTAGCGCGTCGCCCAACCCTGTTTGTGCAAATAATCCAGAATAAATGGGCTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATTAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGT                                                                                                                                            <  2:714187/300‑1                                                                                                                                           AGCGTTCCATCCCGGGACAATATGGCAATTTTCACCCTGCACCTCTCTGTCAGACCTGGTCAAAAGCCCGCGTATCATACATCGACGTGGCGGTTTTAGCGCGTCGCCCAACCCTGTTTGTGCAAATAATCCAGAATAAATGGGCTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATGCTGGGT                                                                                                                                            <  1:832516/300‑1                                                                                                                                                                              CCTGCACCTCTCTGTCAGACCTGGTCAAAAGCCCGCGTAGCATACATCGACGTGNCGGTTTTAGCGCGTCGCCCAACCCTGTTTGTGCAAATAATCCAGAATAAATTGGCTGTAGATTCAATTGTTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGNGAAATAGCGAATATCCGGGGGTCAAAACCCGGAACGATCTTCACTATGTTAAGGGA                                                                                                         <  2:855137/300‑1                                                                                                                                                                                         CTGTCAGACCTGGTCAAAAGCCCGCGTATCATACATCGACGTGGCGGTTTTAGCGCGTCGCCCAACCCTGTTTGTGCAAATAATCCAGAATAAATGGGCTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTAAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCA                                                                                              >  2:91572/1‑300                                                                                                                                                                                                               cgcgtatcagacatcaaatgGGCGGTTGTGGCGCGTCGCCCGACCCTGTTTGTGCAAATAATCCAGAATAAATGGGCTGTAGATTCAATTGGTCAACGCAACATTTATGTGAAAACATGGGGTTGCGGGGGTTCCTTGAATGAGACGAACATTTACAGCATATGAAAAATCCTCTGTTTTTGAACTATGGAAAAACGGAACAGGCTTCATTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAATGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCG                                                                        <  2:285460/280‑1                                                                                                                                                                                                                          CATCGACGTGGCGGTTTTAGCGCGTCGCCCAACCCTGTTTGTGCAAATAATCCAGAATAAATGGGCTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTC                                                             <  1:106690/300‑1                                                                                                                                                                                                                                       GTTTTAGCGCGTCGCCCAACCCTGTTTGTGCAAATAATCCAGAATAAATGGGCTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGANCAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGNGTAAGCGGGCTGTAGCTCACCTGACACTGTC                                                <  2:669689/300‑1                                                                                                                                                                                                                                                    GCCCAACCCTGTTTGTGCAAATAATCCAGAATAAATGGGCTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGNTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCAGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGTGTAGGCGGGCTGTAGCTCACCTGAAACTGTCTGAGCGCGAGGAG                                   >  2:218687/1‑300                                                                                                                                                                                                                                                    GCCCAACCCTGTTTGTGCAAATAATCCAGAATAAATGGGCTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCAATATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGACACTGTCTGAGCGCGAGGAG                                   >  2:426685/1‑300                                                                                                                                                                                                                                                            CTGTTTGTGCAAATAATCCAGAATAAATGGGCTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGACACTGTCTGAGCGCGAGGAGATACGAGC                           <  1:737536/300‑1                                                                                                                                                                                                                                                                 ggtgtacagcaaggcaaaggacgcGGCTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGTGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGACACTGTATGAGCGCGAGGAGATACGAGCTGGTT                      >  2:49717/25‑300                                                                                                                                                                                                                                                                                     AATGGGCTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTNAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGACACTGTCTGAGCGCGAGGAGATACGAGCTGGTTTGTCAGCCAAAATGAGCATT  >  1:678099/1‑300                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AAATGGGGTAACTTGCGGCCTTTGTAGTGAATAGAAGACGCCGCAGGATTTATGTTCATGTAGCAAGAAAGCGGATCAAGAATTTCAACCAGGTGACCGCGCTGTATAGCGGCTTCACGCAGCCGCTTACACGAATAGAGCGTTCCATCCCGGGACAATATGGCAATTTTCACCCTGCACCTCTCTGTCAGACCTGGTCAAAAGCCCGCGTATCATACATCGACGTGGCGGTTTTAGCGCGTCGCCCAACCCTGTTTGTGCAAATAATCCAGAATAAATGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/892139‑891857 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGACACTGTCTGAGCGCGAGGAGATACGAGCTGGTTTGTCAGCCAAAATGAGCATT  >  NC_000913/1469296‑1469588

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.