New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3670669 =	79 (0.750)	15 (0.140)	14/598	5.3	16.0%	coding (1078/1650 nt)	treF	cytoplasmic trehalase
	?	NC_000913	= 4508679	NA (NA)					noncoding (1/1221 nt)	IS30	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTGTCAGTAACCGACTGCGCACGGCGTTTGCCAGACGATCGGCCTGTTCATGGTTCGCCATACCGACATAGAGTGGCACAATGGCGGCAGCGGAAAACAGCGCCAGTTGTTCGCGTCGCCAGTCGTAATCGCGGTAGATGCCGTTTTCATCATCCCAGAGGTAACGGTTTACCGCATCGCGACGGGCACTGGCTTTCTGGCGGAACAGTGCTTCTGTCTCTTTCTCGCCTTTCAGCGCCGAGATGTTGGCGATGGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3670927‑3670669 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGACACTGTCTGAGCGCGAGGAGATACGAGCTGGTTTGTCAGCCA  <  NC_000913/4508679‑4508398                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GTGTCAGTAACCGACTGCGCACGGCGTTTGCCAGACGATCGGCCTGTTCATGGTTCGCCATACCGACATAGAGTGGCACAATGGCGGCAGCGGAAAACAGCGCCAGTTGTTCGCGTCGCCAGTCGTAATCGCGGTAGATGCCGTTTTCATCATCCCAGAGGTAACGGTTTACCGCATCGCGACGGGCACTGGCTTTCTGGCGGAACAGTGCTTCTGTCTATTTCTCGCCTTTCAGCGCCGAAACGTTGGCGATGGCGCTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACAT                                                                                                                                                                                                                                                   >  2:363411/1‑300                                         gtgCTGTTCATGGTTCGCCATACCGACATAGATTTGCACAGTTGCGGCAGCGGAAAACAGCGCCAGTTGTTCGCGTCGCCAGTCGTAATCGCGGTAGATGCCGTTTTCATCATCCCAGAGGTAACGGTTTACCGCATCGCGACGGGCACTGGCTTTCTGGCGGAACAGTGCTTCTGTCTCTTTCTCGCCTTTCAGCGCCGAGATGTTGGCGATGGCGCTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAG                                                                                                                                                                                                           <  2:75022/297‑1                                                      TTCGCCATACCGACATAGAGTGGCACAATGGCGGCAGCGGAAAACAGCGCCAGTTGTTCGCGTCGCCAGTCGTAATCGCGGTAGATGCCGTTTTCATCATCCCAGAGGTAACGGTTTACCGCATCGCGACGGGCACTGGCTTTCTGGCGGAACAGTGCTTCTGTCTCTTTCTCGCCTTTCAGCGCCGAGATGTTGGCGATGGCGCTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGC                                                                                                                                                                                              <  1:348920/300‑1                                                                                           CGGAAAACAGCGCCAGTTGTTCGCGTCGCCAGTCGTAATCGCGGTAGATGCCGTTTTCATCATCCCAGAGGTAACGGTTTACCGCATCGCGACGGGCACTGGCTTTCTGGCGGAACAGTGCTTCTGTCTCTTTCTCGCCTTTCAGCGCCGAGATGTTGGCGATGGCGCTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTC                                                                                                                                                         <  2:69393/300‑1                                                                                              AAAACAGCGCCAGTTGTTCGCGTCGCCAGTCGTAATCGCGGTAGATGCCGTTTTCATCATCCCAGAGGTAACGGTTTACCGCATCGCGACGGGCACTGGCTTTCTGGCGGAACAGTGCTTCTGTCTCTTTCTCGCCTTTCAGCGCCGAGATGTTGGCGATGGCGCTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGT                                                                                                                                                      <  1:495516/300‑1                                                                                                                                                      TCATCCCAGAGGTAACGGTTTACCGCATCGCGACGGGCACTGGCTTTCTGGCGGAACAGTGCTTCTGTCTCTTTCTCGCCTTTCAGCGCCTAGATGTTGGCGATGGCGCTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGA                                                                                              <  1:416848/300‑1                                                                                                                                                         TCCCAGAGGTAACGGTTTACCGCATCGCGACGGGCACTGGCTTTCTGGCGGAACAGTGCTTCTGTCTATTTCTCGCCTTTCAGCGCCGAGATGTTGGCGATGGCGCTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAATATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCATCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGACATAGCGAATATCCTGGGTTCAAAACCAGGAACGATCTTCAATATGTCAAGGGATAC                                                                                           >  2:351791/1‑300                                                                                                                                                                              GCATCGCGACGGGCACTGGCTTTCTGGCGGAACAGTGCTTCTGTCTCTTTCTCGCCTTTCAGCGCCGAGATGTTGGCGATGGCGCTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCAATATGTTAAGGGATACTGGCGGCATAAAACCCCATGA                                                                      >  2:443363/1‑300                                                                                                                                                                                         GGCACTGGCTTTCTGGCGGAACAGTGCTTCTGTCTCTTTCTCGCCTTTCAGCGCCGAGATGTTGGCGATGGCGCTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGG                                                           >  2:400566/1‑300                                                                                                                                                                                                           GAACAGTGCTTCTTTCTCTTTCTCGCCTTTCAGCGCCGAGATGTTGGCGATGTCGCTTGTAGATTCAATTGGTCAACGCAACAGTTATTTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATNTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCAAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGACAC                                         <  2:205991/300‑1                                                                                                                                                                                                           GAACAGGGCTTCTGTCTCTTTCTCGCCTTTCAGCGCCGAGATGTTGGCGATGGCGCTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAANGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCANGAGCGTAAGCGGGCTGTAGCTCACCTGACAC                                         <  2:579485/300‑1                                                                                                                                                                                                               AGTGCTTCTGTCTCTTTCTCGCCTTTCAGCGCCGAGATGTTGGCGATGGCGCTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTNTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGACACTGTC                                     <  1:611581/300‑1                                                                                                                                                                                                                                    CCTTTCAGCGCCGAGATGTTGTCGATGGCGCTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCATAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGACACTGTCTGAGCGCGAGGAGATACGAGC                <  2:805592/300‑1                                                                                                                                                                                                                                             GCCGAGATGTTGGCGCTGGCGCTTGCAAATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTAGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGACACTGTATGCGCGCGAGGAGATACGAGCTGGTTTGTC       >  2:45779/1‑300                                                                                                                                                                                                                                                  GATGTTGGCGATGGCGCTTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGACACTGTCTGAGCGCGAGGAGATACGAGCTGGTTTGTCAGCCA  >  1:358104/1‑300                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GTGTCAGTAACCGACTGCGCACGGCGTTTGCCAGACGATCGGCCTGTTCATGGTTCGCCATACCGACATAGAGTGGCACAATGGCGGCAGCGGAAAACAGCGCCAGTTGTTCGCGTCGCCAGTCGTAATCGCGGTAGATGCCGTTTTCATCATCCCAGAGGTAACGGTTTACCGCATCGCGACGGGCACTGGCTTTCTGGCGGAACAGTGCTTCTGTCTCTTTCTCGCCTTTCAGCGCCGAGATGTTGGCGATGGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3670927‑3670669 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGACACTGTCTGAGCGCGAGGAGATACGAGCTGGTTTGTCAGCCA  <  NC_000913/4508679‑4508398

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.