| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,097,118 | 0 | C | A | 30.0% | 68.9 / 16.5 | 50 | intergenic (+289/+447) | ycdU/serX | uncharacterized protein YcdU/tRNA‑Ser |
| Reads supporting (aligned to +/- strand): ref base C (17/18); new base A (9/6); total (26/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.45e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TTAATAAGTGAGGAAGTGATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCC‑GGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAG‑CTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT > NC_000913/1096819‑1097390 | ttAATAAGTGAGGAAGTGATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAc < 1:893049/300‑1 (MQ=255) gTGATAGGAAGTGACCAGATAATACATATATGTTCTGTATTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCC‑GGTCGGGGCtt > 1:828144/1‑300 (MQ=255) gTGATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCNTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCC‑GGTCGGGGCtt > 2:235966/1‑300 (MQ=255) taagagacagaGATAATACATATATGTTCTGTACTCCCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCC‑GGTCGGGGCTTCTCATc < 1:204815/290‑1 (MQ=255) gAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCCCCAGCTGTCGCCCCCC‑GGTCGGGGATCCTCATcc > 1:466124/1‑300 (MQ=255) gTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGGAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCC‑GGTCGGGGCTTCTCATccccc < 1:922233/300‑1 (MQ=255) cAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATTGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCC‑GGTCGGGGCTTCTCATCCCCCCGgtg < 1:470545/300‑1 (MQ=255) cAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCC‑GGTCGGGGCTTCTCATCCCCCCGgtg < 1:774786/300‑1 (MQ=255) aagagaggacatacgtGTTTTGTGCTCTCTGTCGCAGTTTGATTTGTGACTGATGAATCAGACAGTGTATGTGTGCGATGTCCCCTCGCCCTAATGGGTGGTGGCNTGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCC‑GGTCGGGGCTTCTCATCCCCCCGgtg < 2:809007/285‑1 (MQ=11) aGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGCAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCC‑GGTCGGGGCTTCTCATcctgtctctta > 2:203447/1‑291 (MQ=255) aGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCC‑GGTCGGGGCTTCTCATCCCCCCGgtgt > 1:588890/1‑300 (MQ=255) aGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGATGAGGGGGAGATCAACTCACTTAGCTCGCCC‑TGCGGGCAGCACGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTAGACAGTTGTCGAACACC‑GGTAGGGGCTTCTAATCCACACGgtgt > 1:862621/1‑300 (MQ=21) ataCGTATATGTTCTGTACTCTCTTTCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACGGACGTGGGCGTGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCC‑GGTCGGGGCTTCTCATCCCCCCGGTGTGTGCa < 1:237406/300‑1 (MQ=255) ataCATATATGTTCTGTACTCTCTTGCGCATTGTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCC‑GGTCGGGGCTTCTCATCCCCCCGGTGTGTGCa < 2:464363/300‑1 (MQ=255) taCATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGNCAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTNGCTGTCGCCAGTTGTCGACCCCC‑GGTCGGGGCTTCTCATCCCCCCGGTGTGTGCaa < 2:842456/300‑1 (MQ=255) aagggacaggttttttcctctctgtcgcAGTTTGGTTTTTGACGGAGAAACCAGACGGTTGGTGGGAACGATTTCCCCCCGCCCCAACGGATGTGGGCGGGGGCACCCGGGGGGGGCAAGAGAAGAAAAAAAAGCCCGTACTTTCGTANGAGCTCTTCTTTAAATATGGCGGTGANGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCC‑GGTCGGGGCTTCTCATCCCCCCGGTGTGTGCaa < 2:621611/275‑1 (MQ=11) gcATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCC‑GGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAAt < 1:919338/299‑1 (MQ=255) aCATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCC‑GGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAAt < 1:45021/300‑1 (MQ=255) cATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCC‑GGTCGGGGCTTCTCATCCCCCCGGTGTGTGCactg > 1:807158/1‑297 (MQ=255) cATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCAAGTTGTCGACCCCC‑GGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAAtc > 2:894261/1‑299 (MQ=255) atagatGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACTAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCC‑GGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATac < 2:386867/296‑1 (MQ=255) gTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTCCTTTCGTACGAGCTTTTCTTTAAATATGGCGGTTAGGGGGGGATTTACTCGCTTCGCTCNCCC‑TGCGGGCAGCCCGCTCACTGCGTTCAAGGTCTGTCCCACTGGCTGTCAACAGTTGTCGAAACCC‑AGTCGGGGCTTCTCATCCCCCCGGTTTGTGccactttctcct > 1:636602/1‑289 (MQ=255) gTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCACTCGCCC‑TACGAGCAGCACGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCA‑GGTCGGGGCTTCTCATCCCACCGGTGTGTGCAATACACGaaa > 1:217229/1‑300 (MQ=255) gTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGCTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TACGGGCAGCCCGCTCACTGCGTCCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCC‑GGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGaaa > 2:882505/1‑300 (MQ=255) tCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACTAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCC‑GGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATacccaacaca > 1:196040/1‑292 (MQ=255) gtattctctTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCTCCC‑TACGATCCGCCCACCCACTACGTTCACGGTATGTCCCAATGGCTGTCGACAGTTGTCGAACCCC‑GGTCGGGGATTCTCATCCCAACGGTGTGTGCAATACGCGaaaaaaaa > 1:536021/5‑300 (MQ=18) ctctTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCC‑GGTCGGGGCTTCTCATCCCCCCGGTGTTTGCAATACACAAAAAAAAAGCCCg > 1:899264/1‑300 (MQ=255) tgatgcagttcggttgtcgACTGATTAATCAGACACTGAATGTGCACGCTTTCCCCTCACCCTAATGGACGTGGGCGTGGACACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCC‑GGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTAc < 2:575890/287‑1 (MQ=11) gTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAAATGGCTGTCGCCAGTTGTCGAACCCC‑GGTCGGGGCTTCTCATCCCCCCGGTGTGTGTAATACACGAAAAAAAAGCCCGTACGTTCGTACGAG‑CTCTTCTTTAAat > 2:709274/1‑300 (MQ=255) atAACCAGACGGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTGCGAGCTCNTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCTCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCC‑GGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAG‑CTCTTCTTTAAat < 1:662325/299‑1 (MQ=255) cAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTATTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGATGTCGCCGGTTGTCGAACCCA‑GGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAG‑CTCTTCTTTAAATATGGCGGTg > 1:152995/1‑300 (MQ=255) gTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCCTCCACCCA‑CCCGCTCCCCACATCCCCAGTCCTCCCCCCTGGCTGTCGCCAGTTGTCGACCCCC‑GGTAGGGGCTTCTCATCCCCCCGGTGTGTGCAATAAACGAAAAAAAAGCCCGTACTTTCGTATGAG‑CTCTTATTTAAATATGGCGGTGAg > 1:527862/1‑300 (MQ=17) cGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCC‑GGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAG‑CTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcgcttcgct < 1:895293/300‑1 (MQ=255) cacTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACCCGCTTCACCCGCCC‑CGCGTACAGCAAGCTCCCTGCGTTCACGGTCTGTCCAACTGTCCGTCACACGTCGCCACCCCCC‑GGCCAGGGCTCCTCATCCCAAAGGTGTGTGTAATATACGAAAAAAAAGCCCGTAATTTAGTATGAG‑CTCTTATTTAAGTATGGCGGTGAGGGGGGGATTGGCtcactgtactct > 2:444565/3‑290 (MQ=2) tAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCC‑GGTCGGGTCTTCTCATCCCCAAGGCGTGTGGAATACACGAAAAACAAGCACGTACTTTCGTATGAG‑TTCTTATTTAAATATGGAGGTGAGGGGGGGGTTGACTAGCTtcgctcgcac > 1:205473/1‑298 (MQ=14) gACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCC‑GGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAG‑CTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCATTCGCCCTGCgt > 1:187255/1‑299 (MQ=255) gtggCGGGGGCACTCTGTGTGTGCAATATACGAAAAAAAAGCCCGGACTTTCTTACGAGCTCTTCTTTGAATATGGTGGGGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGTTCACTGCGTTCACGTTCGGTACAACGGGCGGGCGCCAGTTGTCGAACCCC‑GTTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAG‑CTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGTGCAg < 2:372833/298‑1 (MQ=11) gtgtgCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCACCA‑TCCACCTCCCCAAGGCCAAGACCCCTCCTCCCCCATATGTGTGCAAGACACGAAAAAAAAGCACGTAATTTGGTGTGGG‑GTGTTCTGTAGAGGTGGAGGTGGGGGGGGGATTGACTCGCGTAGCTTGCACTGCGGGCAGCCCGCTCACTGCGTTCAc > 1:54920/1‑300 (MQ=2) gCAATATACGAAAAAAAAGCCCGTACTTTCGTACTAGCTCTTCTTTAAATATGGCGTTGAGGGGGGGATTGGCTCTCTTCGCTCGCCC‑TGCGGGCAGTCCGCTTACTGCGTGCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCC‑GGGCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAG‑CTCTTCTTTAGATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTc < 1:732898/300‑1 (MQ=11) aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTGTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCACTCACTGCGTTCACGGTCTGTCCAACTGGCTTGCGCCAGTTGTCGACCCCC‑GTTCGGGGCTTCTTATCCCCCCGGTGGGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAG‑CTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTGCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTGCACGGTCTGTCCAAcgg < 2:556414/300‑3 (MQ=11) tcttTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCC‑GGTCGGGGCTTCTNATCCCCCCGGTGTGGGCCATCCACGANAAAAAAACACGTACTTTCATACGAGACT‑GTCTGTAAGTAGGGCGGTGAGGGGGGTGTTGACTCACCTCTCTCGTACTGCGGGCAGCCCGCTCCCTGTGTTCACGGTATGTCCAACTTGCTGTCGCCAGTTGTCGAACCCCAGTTgggg > 2:604487/1‑300 (MQ=11) tcttTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGACAGTTGTCGACCCCC‑GGTCGGGGCTTCTCATCCCCCCGTTGTGTTTACCCCCCTCCAAAAACCCCCGCACCTTCGTCCTAG‑CTCTTCTTTAAATCTGGCGGTGGGGGGGGGATTGACTAGGTTAGCTTGAACTGTGGGTGGCCTGCTAATTGCGTTCACGGTTTGTCCAACTGGCTGTCGCCGGTTGTCGAACCCCGGTTgggg > 1:212287/1‑300 (MQ=2) cgggAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGTCGGCCCGCTCACTACGTCCACGGTCTATCCAATTGGCTTTCGCCATTCGTCGACCCCC‑GGTCGTGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCATACTTTCGTACGAG‑CTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATcccccc < 2:366600/297‑1 (MQ=11) aGGGTGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTTGCGCCATTTGTCGACCCCC‑GGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAG‑CTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGgtg < 1:707045/300‑1 (MQ=12) aGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCC‑GGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAG‑CTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCGGgtg < 1:324923/300‑1 (MQ=17) gggATTGACTCGCTTCGCTCGCCC‑TGCCGTAAGCCCACTCACGGCGTTCACGGTCTGTCCAACTGGCTGTCGCCATTTGTCGACCCCC‑GTTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAG‑CTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGc < 1:439503/300‑1 (MQ=255) ggATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCTGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCC‑GGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAG‑CTCTTCTTTAAATATGGCGGTGAGGGGGGGAGTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCa < 1:432908/300‑1 (MQ=17) aTTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGTTCTGTCCAACTTGCTGTCGCCAGTTGTCGACCCCC‑GTTCGGGGCTTCTCATCCCCCCGGTGGGGGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAG‑CTCTTCTTTAAATATGGCGTTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAat < 1:892965/300‑1 (MQ=255) ccc‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCC‑GGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAG‑CTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGAAGCCCGCTCACTGCGTTCGCGGTCCGTCCCACTGGCTGTCGCCCGTTGTCGAAACCCAGTCGGGGCTTCTCATCCCCCCGGTGTGTGCCATATACGAAAAAAAAGACCg > 1:574948/1‑300 (MQ=11) gTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCC‑GGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAG‑CTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGAATCGCTTCGCCCGCCCTACGGGCCACCCGTTCACTGCGTTCCCGGTCCGTCCAACTGGCTGTAGCAAGTTGCAGCAACCCGGTCGGGGCTTCTCATCCCCCATATGTGTGCACTGTACGAACACAAAGcaagtaagttagtaggggttcttattta > 2:475549/1‑273 (MQ=11) gTCCAACTGGCTGTCGCCAGTTGTCGACCCCC‑GGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAG‑CTCTTCTTTAAATATGGCGGTGAGGGNGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCANCTGGCTGTCGCCAGTTGTCTCACCCCGGTCGGGGCTTCCCCTACCCCCGGTGTGTACAATGTATGAAAAAAAAGCCCGCACTTTCGTACGAGGTTTTCTATCAATATGTCGGt > 2:723723/1‑300 (MQ=11) | TTAATAAGTGAGGAAGTGATAGGAAGTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCC‑TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCC‑GGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAG‑CTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT > NC_000913/1096819‑1097390 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |