Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 75,752 | 2 bp→G | coding (1547‑1548/1656 nt) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 75,752 | 0 | C | . | 93.7% | 268.4 / 12.0 | 63 | coding (1548/1656 nt) | sgrR | DNA‑binding transcriptional dual regulator SgrR |
Reads supporting (aligned to +/- strand): ref base C (0/0); major base . (32/27); minor base G (4/0); total (36/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.28e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.40e-01 | |||||||||||
* | NC_000913 | 75,753 | 0 | A | G | 93.5% | 199.1 / ‑4.3 | 62 | L516S (TTG→TCG) | sgrR | DNA‑binding transcriptional dual regulator SgrR |
Reads supporting (aligned to +/- strand): ref base A (4/0); new base G (31/27); total (35/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.25e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ACTTTGCACCTCAAAAAAGAGTGGCAAAGGACTTGAGAAGGAGCCTCAAATCCCTTCGCCGGCGTTATCCGGATCAGGTTCGACGGGTATTTTCTCAGCGCACGCGTACGCGTGGCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTATC‑AACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCG‑CAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAA‑TGGCACCATCGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGATTCATCTCGCCATTGCGCCAGCGAGCAGCGTCGGCTTGCCAGTCAATGGGAATGCAATGTTGTAGCAGTGGCACTTCGCATAAATGTGCGAAAACAGAGAAGTCCAGCGGCAGGGTAAAGTTGGCGCTGTTTAGCCAGATATCACTTTCGATCTCTCCTGTATGCCACTGATCGTAGTCGATCTCTTTGATTTTCAGCGTGACCTGGTGACTTGCCAGAATC > NC_000913/75479‑76028 | acTTTGCACCTCAAAAAAGAGTGGCAAAGGACTTGAGAAGGAGCCTCAAATCCCTTCGCCGGCGTTATCCGGATCAGGTTCGACGGGTATTTTCTCAGCGCACGCGTACGCGTGGCACCCCGTTGAGAACGGCGTTAGTGTAGTGGTTTTGGTATC‑AACCCGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTCAAATCGAACCAGCCGAGGGTATTCATGCG‑TCGGCCGCACACACTGCNTTGCCCCCGAATGATCAGCAAGTGGTG‑GATAAGCGGCACCATTGCTTNGCTGGc > 2:714039/1‑300 (MQ=255) cTCAAAAAAGAGTGGCAAAGGACTTGAGAAGGAGCCTCAAATCCCTTCGCCGGCGTTATCCGGATCAGGTTCGACGGGTATTTTCTCAGCGCACGCGTACGCGTGGCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTATC‑AACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTg < 1:743958/300‑1 (MQ=255) ggCAAAGGACTTGAGAAGGAGCCTCAAATCCCTTCGCCGGCGTTATCCGGATCAGGTTCGACGGGTATTTTCTCAGCGCACGCGTACGCGTGGCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTATC‑AACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTc < 1:415858/300‑1 (MQ=255) ggACTTGAGAAGGAGCCTCAAATCCCTTCGCCGGCGTTATCCGGATCAGGTTCGACGGGTATTTTCTCAGCGCACGCGTACGCGTGGCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTCTC‑CACCAGCCATCATGGATCCGGTGGCGCAAACCACGCTTATTTAAAATCGAACCAGCCGAGGGTATTTCTGCG‑TAGGCCGCGCATACCGCGTTGCCCCCGAATGATCAGCAAGTGGTG‑GATAAGCGGCACCCTTGCTTTGCTGGCGACCAGTTGCTGGCCCCCGTTTG‑CCaag > 1:472126/1‑298 (MQ=255) ggACTTGAGAAGGAGCCTCAAATCCCTTCGCCGGCGTTATCCGGATCAGGTTCGACGGGTATTTTCTCAGCGCACGCGTACGCGTGGCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTATC‑AACCAGCAATCATGGATCCGGTGGCGAAAACCACGCTGATTTAAAATCGACCCAACCGAGGGTATTCATTCG‑TAGGCCGCGCCTACTGCCTTGCCCCTGAATGATCAGACAGTGGTG‑NATAAGCGGCACCATTGATTTTCTGGCGACCAGTTGCTGGCACAAGTTCG‑CCAgg > 2:634322/1‑299 (MQ=255) aGGAGCCTCAAATCCCTTCGCCGGCGTTATCCGGATCAGGTTCGACGGGTATTTTCTAAGCGCACGCGTACGCGTGGCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTACC‑AACCAACCACCCTGGATCCAGTGGAGCAAACCAGGCCGATTTAAAATCGAACCAGCCGAGGGTATTCCTGCGTCAG‑CCGCGCATCCTGCGTTTCCCATGAAGGATCAGCCAGTGGTGGATCAA‑CGGAAACACTGCTTTGCTGGCGACCAGTTGCTGGCACCCGTTCG‑CCAggtttacttcgc > 2:148524/1‑289 (MQ=255) gCGTTATCCGGATCAGGTTCGACGGGTATTTTCTCAGCGCACGCGTACGCGTGGCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTATC‑AACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCCTGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGNATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTTCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCg > 2:745540/1‑300 (MQ=255) gCGTTATCCGGATCAGGTTCGACGGGTATTTTCTCAGCGCACGCGTACGCGTGGCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTATC‑AACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGAACAGTTGCTGGCACCAGTTCG‑CCAGGTTCCTTTCGCCATTGCGCCAGCgggaggcgtcg > 1:540468/1‑290 (MQ=255) gCGTTATCCGGATCAGGTTCGACGGGTATTTTCTCAGCGCACGCGTACGCGTGGCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTATC‑AACCAACAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAACGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGATTCATCTCGCCATTGCGCCAGCGGGCGGCGTCg > 2:22262/1‑300 (MQ=255) gATCAGGTTCGACGGGTATTTTCTCAGCGCACGCGTACGCGTGGCACCCCGTTGAGAACGGCGTTAGTGTAGTGGTTTTGTTCTC‑CACCAGCAATCATGGATCCGGTGGCGCAAACCACACTGATTTAAAATCGAACCAGCCGGGGGTATTCATGCG‑TAGGCCACGCATCCTGCGTTGCCCCTGAATGGTCCGCCAATGGTG‑GATAAGCGGCACCATTGTTTTGCTTGCGACCAGTTGCTGGCACCCGTTCG‑CCCGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGt > 1:153653/1‑300 (MQ=255) gATCAGGTTCGACGGGTATTTTCTCAGCGCACGCGTACGCGTGGCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTATC‑AACCCACCATCATGGATCCGGTGGCGCAAACCACGCTGATTTCAAATCGAACCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATNAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGt > 1:597814/1‑300 (MQ=255) cGGGTATTTTCTCAGCGCACGCGTACGCGTTGCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTATC‑AACCAGCAATCATGGATCCGTTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAAtac < 1:50327/300‑3 (MQ=255) cGGGTATTTTCTCAGCGCACGCGTACGCGTGGCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTATC‑AACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAAtac < 1:156262/300‑3 (MQ=255) ggTATTTTCTCAGCGCATGCGTACGCGTGGCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTCTCCAACCA‑CAATCCTGGATCCGGTGGCGCAAAACACGCTGATTTCCAACCGAACCCACCGAGGGTACTCCTGCG‑TAGGCCGAGCATACTGCGGTGCCCCTGCATTATCCGCCAGTGGTTGATAAA‑CGGCCCCATTGCTTTGCTTGCGCCCAATTTCTGGCCCCCGTTCG‑CCAAGTTCATTTCGCCATTGTGCAAGCGGGTGGTGTCGGCTTGCCaatcgatcagaacacaa > 2:77604/1‑284 (MQ=255) ggTATTTTCTCAGCGCACGCGTACGCGTGGCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTCTC‑CACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGATGGTATTCATGCG‑TAGGCCGCGCATACTTCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAAtacag > 1:752530/1‑296 (MQ=255) ggTATTTTCTCAGCGCACGCGTACGCGTGGCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTATC‑AACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAAtacag < 1:828306/300‑5 (MQ=255) gTATTTTCTCAGCGCACGCGTACGCGTGGCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTATC‑AACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAAtacagt < 2:720851/300‑6 (MQ=255) gTATTTTCTCAGCGCACGCGTACGCGTGGCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTATC‑AACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAAtacagt < 1:643854/300‑6 (MQ=255) aTTTTCTCAGCGCACGCGTACGCGTGGCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTATC‑AACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAAtacagtgt < 2:528479/300‑8 (MQ=255) tcAGCGCACGCGTACGCTTGGCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTATC‑AACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGc < 1:311840/300‑1 (MQ=255) tcAGCGCACGCGTACGCGTGGCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTATC‑AACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAANCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTNGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGc < 2:682785/300‑1 (MQ=255) tcAGCGCACGCGTACGCGTGGCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTATC‑AACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGc < 2:774949/300‑1 (MQ=255) tcAGCGCACGCGTACGCGTGGCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTATC‑AACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGc < 1:9062/300‑1 (MQ=255) gcgtacgcgtGGCACCCCGTTGAGAATGGCGTTAGTGTAGTGATTTTGTTATC‑AACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTCAAATCGAACCAACCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGAACAGTTGCTGGCACCAGTTCG‑CCAGGTTCCTTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGACCGGAATACAATGTTGGCGCAGCGGCAcc > 2:438743/1‑299 (MQ=255) gcgtGGCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTATC‑AACCAGCAATCATGGATCCGGTGGAGCAAACCACGCTGATTTAAAATCGAACCAGACGAGGGTATTCATGCG‑TAGGCCGAGCATACTGCTTTGCCCCCGAATGATCAGCCAGCGGTG‑GATAAGCGGCACCATTGTGTTGCTTGCGACCAGTTACCGGCACCAGTTCGACCAG‑TTCCTTTCGCCATTGTGCCAGCGGGCGGTGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAATGGCAcctcacac > 2:258229/1‑293 (MQ=255) cgtGGCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTATC‑AACCAGCAATCATGGATCCGGTGGCGCAAACCACACTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTTGAGCAGCGGCACCTCGCaca < 2:81554/300‑3 (MQ=255) tGGCACCCCGTTGAGAACGTCGTTAGTGTATTGATTTTGTTATC‑AACCAGCAGTCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAGCGGCACCTCGCacaag < 2:558853/300‑5 (MQ=255) tGGCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTATC‑AACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAGCGGCACCTCGCacaag < 1:492765/300‑5 (MQ=255) cccGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTATC‑AACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGACATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAGCGGCACCTCGCacaagtgcgcg > 1:684066/1‑290 (MQ=255) ccGTTGAGAACGGCGTTAGTGTAGTGATTTTNTTCTC‑CACCAGCAATCCTGGATCCGGTGGCGCAAACCACGCTGATTTCAAATCGAACCAGCCGAAGGTATTCATGCG‑TAGGCCGCGCCTACTNCGTTGCCCCTGAATGATCAGCCAGTGGTGGATCAG‑CGGCAACATTGCTTTGCTGGCGAACAATTTCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCAGAATACAATGTTGGAGCAGCGGCACCTCGCacaagtgcgcga > 2:611462/1‑289 (MQ=255) ttggagaACGGCGTTAGTGTAGTGATGTGGTTAGC‑AACTAGCAATCATGGATCCGGTGGCGAAAACCACACTAATTTAAAATCGAACCAGCCGAGGGTATTCATGCG‑TAGTCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCATTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAGCCGCACCTCGCACAAGTGCGCGaac < 2:445183/297‑2 (MQ=255) gTTGAGAACGGCGTTAGTGTAGTGATTTTGTTCTC‑CACCAGCCATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAAACAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAGCGGCACCTCGCACAAGTGCGCGaac > 1:433068/1‑299 (MQ=255) gTTGAGAACGGCGTTAGTGTAGTGATTTTGTTCTC‑AACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCCTGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAGCGGCAccccgcacaagtgcgcgaac > 1:541576/1‑281 (MQ=255) gTTGAGAACGGCGTTAGTGTAGTGATTTTGTTATC‑CACCAGCAATCCTGGATCCGGTGGCGCAAACCACGCTGATTTCAAATCGAACCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAGCGGCACCTCGCACAAGTGCGCGaac > 1:816629/1‑299 (MQ=255) gTTGAGAACGGCGTTAGTGTAGTGATTTTGTTATC‑AACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAGCGGCACCTCGCACAAGTGCGCGaac < 1:319181/300‑2 (MQ=255) gCGTTAGTGTAGTGATTTTGTTATC‑CACCAGCAATCCTGGATCCGGTGGCGCAAACCACGCTGATTTCCAATCGACCCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCCGTGGTGGATCAG‑CGGCACCATTGCTTTGCCGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCACTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGCGTTGGAGCAGCGGCaactcgaacaagtgcgcgaacagcgaaaaag > 2:183470/1‑270 (MQ=255) gCGTTAGTGTAGTGATTTTGTTATC‑AACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCCGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑ACAGGTTCATTTCGACATTGCGCCAGCGGGCGGCGTCGGCTTGCCCGTCGATCGGAATACAATGTTGGAACAGCGGCAccccgcacaagtgcgcgaacagcgaaaaat > 2:400443/1‑271 (MQ=255) cAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAGCGGCACCTCGCACAAGTGCGCGAACAGCGAAAAATCCAGCGGCAGCGTAAAGTTGGCGCTGtt > 1:772321/1‑300 (MQ=255) aaTCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAGCGGCACCTCGCACAAGTGCGCGAACAGCGAAAAATCCAGCGGCAGCGTAAAGTTGGCGCTGTTAAGc < 1:489837/300‑1 (MQ=255) aTCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAGCGGCACCTCGCACAAGTGCGCGAACAGCGAAAAATCCAGCGGCAGCGTAAAGTTGGCGCTGTTAAGcc < 2:776934/300‑1 (MQ=255) gATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAGCGGCACCTCGCACAAGTGCGCGAACAGCGAAAAATCCAGCGGCAGCGTAAAGTTGGCGCTGTTAAGCCAGatat < 1:479975/300‑1 (MQ=255) aTCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTCGGAGCAGCGGCACCTCGCACAAGTGCGCGAACAGCGAAAAACCCAGCGGCAGCGTAAAGTTGGCGCTGTTAAGCCAGATATc > 2:738872/1‑300 (MQ=255) ccGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAGCGGCACCTCGCACAAGTGCGCGAACAGCGAAAAATCCAGCGGCAGCGTAAAGTTGGCGCTGTTAAGCCAGATATcgc < 1:738280/300‑3 (MQ=255) gcAAACNACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCG‑TAGGCCGNGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAGCGGCACCTCGCACAAGTGCGCGAACAGCGAAAAATCCAGCGGCAGCGTAAAGTTGGCGCTGTTAAGCCAGATATCGCTCTCGAtc < 2:699142/300‑1 (MQ=255) aaCCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAGCGGCACCTCGCACAAGTGCGCGAACAGCGAAAAATCCAGCGGCAGCGTAAAGTTGGCGCTGTTAAGCCAGATATCGCTCTCGAtctct > 1:313607/1‑300 (MQ=255) cTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAGCGGCACCTCGCACAAGTGCGCGAACAGCGAAAAATCCAGCGGCAGCGTAAAGTTGGCGCTGTTAAGCCAGATATCGCTCTCGATCTCTCCttcat < 1:38236/300‑5 (MQ=255) aaCCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAGCGGCACCTCGCACAAGTGCGCGAACAGCGAAAAATCCAGCGGCAGCGTAAAGTTGGCGCTGTTAAGCCAGATATCGATCTCGATCTCTCCTTCATGCCACTGATCGTAg > 2:399757/1‑300 (MQ=255) aCCAGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAGCGGCACCTCGCACAAGTGCGCGAACAGCGAAAAATCCAGCGGCAGCGTAAAGTTGGCGCTGTTAAGCCAGATATCGCTCTCGATCTCTCCTTCATGTCACTGATCGTAgc < 1:487450/300‑2 (MQ=255) aGCCGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAGCGGCACCTCGCACAAGTGCGCGAACAGCGAAAAATCCAGCGGCAGCGTAAAGTTGGCGNTGTTAAGCCAGATATCGCTCTCGATCTCTCCTTCATGCCACTGATCGTAgctga > 2:643764/1‑296 (MQ=255) ccGAGGGTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCTGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTTGAGCAGCGGCACCTCGCACAAGTGCGCGAACAGCGAAAAATCCAGCGGCAGCGTAAAGTTGGCGCTGTTAAGCCAGATATCGCTCTCGATCTCTCCTTCATGCCACTGATCGTAgctgatc < 1:347480/300‑7 (MQ=255) gTATTCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAGCGGCACCTCGCACAAGTGCGCGAACAGCGAAAAATCCAGCGGCAGCGTAAAGTTGGCGCTGTTAAGCCAGATATCGCTCTCGATCTCTCCTTCATGCCACTGATCGTAGCTGATCTCTTTg > 1:710902/1‑300 (MQ=255) ttCATGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAGCGGCACCTCGCACAAGTGCGCGAACAGCGAAAAATCCAGCGGCAGCGTAAAGTTGGCGCTGTTAAGCCAGATATCGCTCTCGATCTCTCCTTCATGCCACTGATCGTAGCTGATCTCTTTGAtt > 1:750723/1‑300 (MQ=255) tGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAGCGGCACCTCGCACAAGTGCGCGAACAGCGAAAAATCCAGCGGCAGCGTAAAGTTGGCGCTGTTAAGCCAGATATCGCTCTCGATCTCTCCTTCATGCCACTGATCGTAGCTGATCTCTTTGAtttcca > 1:184190/1‑297 (MQ=255) tGCG‑TAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAGCGGCACCTCGCACAAGTGCGCGAACAGCGAAAAATCCAGCGGCAGCGTAAAGTTGGCGCTGTTAAGCCAGATANCGCTCTCGATCTCTCCTTCATGCCACTGATCGTAGCTGATCTCTTTGNtttcca > 2:718808/1‑297 (MQ=255) ccGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAGCGGCACCTCGCACAAGTGCGCGAACAGCGAAAAATCCAGCGGCAGCGTAAAGTTGGCGCTGTTAAGCCAGATATCGCTCTCGATCTCTCCTTCATGCCACTGATCGTAGCTGATCTCTTTGATTTCCAGCGTGAcc < 1:554305/300‑1 (MQ=255) cgcATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAGCGGCACCTCGCACAAGTGCGCGAACAGCGAAAAATCCAGCGGCAGCGTAAAGTTGGCGCTGTTAAGCCAGATATCGCTTTCGATCTCTCCTTCCTGCCACTGATCGTAGCTGATCTCTTTGATTTCAAGCGTGAACTgg > 2:168405/1‑300 (MQ=255) cgcATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAGCGGCACCTCGCACAAGTGCGCGAACAGCGAAAAATCCAGCGGCAGCGTAAAGTTGGCGCTGTTAAGCCAGATATCGCTCTCGATCTCTACTTCATGCCACTGATCGTAGCTGATCTCTTTGATTTCCAGCGTGACCTgg > 2:327235/1‑300 (MQ=255) aTACTGCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAGCGGCACCTCGCACAAGTGCGCGAACAGCGAAAAATCCAGCGGCAGCGTAAAGTTGGCGCTGTTAAGCCAGATATCGCTCTCGATCTCTCATTCATGCCACTGATCGTAGCTGATCTCTTTGATTTCCAGCGTGACCTGGTGa > 2:548158/1‑300 (MQ=255) gCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCTCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAGCGGCACCTCGCACAAGTGCGCGAACAGCGAAAAATCCAGCGGCAGCGTAAAGTTGGCGCTGTTAAGCCAGATATCGCTCTCGATCTCTCCTTCATGCCACTGATCGTAGCTGATCTCTTTGATTTCCAGCGTGACCTGGTGACTTGc > 1:771772/1‑300 (MQ=255) gCGTTGCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAGCGGCACCTCGCACAAGTGCGCGAACAGCGAAAAATCCAGCGGCAGCGTAAAGTTGGCGCTGTTAAGCCAGATATCGCTCTCGATCTCTCCTTCATGCCCCTGATCGTAGCTGATCTCTTTGATTTCCAGCGTGACCTGGTGACttac > 2:275476/1‑298 (MQ=255) gcaccTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CAAGGTTCATTTCGACATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAGCGGCACCTAGCACAAGTGCGCGAACAGCGAAAAATCCAGCGGCAGCGTAAAGTTGGCGCTGTTAAGCCAGATATCGCTCTCGATCTCTCCTTCATGCCACTGATCGTAGCTGATCTCTTTGATTTCCAGCGTGACCTGGTGACTTGCCAGaa > 2:843265/4‑300 (MQ=255) gCCCCTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAGCGGCACCTCGCACAAGTGCGCGAACAGCGAAAAATCCAGCGGCAGCGTAAAGTTGGCGCTGTTAAGCCAGATATCGCTCTCGATCTCTCCTTCATGCCACTGATCGTAGCTGATCTCTTTGATTTCCAGCGTGACCTGGTGACTTGCCAGaa > 1:434523/1‑300 (MQ=255) cccTGAATGATCAGCCAGTGGTG‑GATAAGCGGCACCATTGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGGTTCATTTCGCCATTGCGCCAGCGGGCGGCGTCGGCTTGCCAGTCGATCGGAATACAGTGTTGGAGCAGCGNCACCTCGCACAAGTGCGCGAACAGCGNAAAATCCAGCGGCAGCGTAAAGTTGGCGCTGTTAAGCCAGATATCGCTCTCGATCTCTCCTTCATGCCACTGATCGTAGCTGATCTCTTTGATTTCCAGCGTGACCTGGTGACTTGCCAGAATc < 2:590416/300‑1 (MQ=255) | ACTTTGCACCTCAAAAAAGAGTGGCAAAGGACTTGAGAAGGAGCCTCAAATCCCTTCGCCGGCGTTATCCGGATCAGGTTCGACGGGTATTTTCTCAGCGCACGCGTACGCGTGGCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTATC‑AACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCG‑CAGGCCGCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAA‑TGGCACCATCGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCG‑CCAGATTCATCTCGCCATTGCGCCAGCGAGCAGCGTCGGCTTGCCAGTCAATGGGAATGCAATGTTGTAGCAGTGGCACTTCGCATAAATGTGCGAAAACAGAGAAGTCCAGCGGCAGGGTAAAGTTGGCGCTGTTTAGCCAGATATCACTTTCGATCTCTCCTGTATGCCACTGATCGTAGTCGATCTCTTTGATTTTCAGCGTGACCTGGTGACTTGCCAGAATC > NC_000913/75479‑76028 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |