Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 161,553 G→A A160V (GCC→GTC)  thpR ← RNA 2',3'‑cyclic phosphodiesterase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913161,5530GA100.0% 215.8 / NA 61A160V (GCC→GTC) thpRRNA 2',3'‑cyclic phosphodiesterase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (15/46);  total (15/46)

TTTGAGTTAATTCCCAGGTGTGTGGGTATTTCCGTTTGGTGTTGTCTGAAGTCGAATACCAGACGGTATCGCCAGGCGTTGCACAACCGGTCATCGCACCCGTATTCGGGCAGTGTAGCGTTAATTCGCGACCATCGGGTGTGATCACATCGGCTAAAAAACGTTTGTAACGCTGAATTAGCGTCGCGCGCTGTAGAGGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAACGGAGCATATTCGCCAGCTGGATTAAGCCGCGTGGCGGCTGACGCATCCCTAACCACACCACACGCGAACGCAGCCATTGTCCGGCGTCATCAAGCGTGAGTGTGAAACCAGGTTGACGAATCCGTCCGGCTAAAAG  >  NC_000913/161273‑161848
                                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                                                           
tttGAGTTAATTCCCATGTGTGTGGGTATTTCCGTTTGGTGTTGTCTGAATTCGAATACCAGACGGTATCGCCATGCGTTGCACAACCGGTCATCGCACCCGTATTCGGGCAGTGTAGCGTTAATTCGCGACCATCGGGTGTGATCACATCGGCTAAAAAACGTTTGTAACGCTGAATTAGCGTCGCGCGCTGTAGAGGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAg                                                                                                                                                                                                                                                                                          <  2:466768/300‑1 (MQ=255)
  tGAGTTAATTCCCAGGTGTGTGGGTATTTCCGTTTGGTGTTGTCTGAAGTCGAATACCAGACGGTATCGCCAGGCGTTGCACAACCGGTCATCGCACCCGTATTCNGGCAGTGTAGCGTTAATTCGCGACCATCGGGTGTGATCACATCGGCTAAAAAACGTTTGTAACGCTGAATTAGCGTCGCGCGCTGTAGAGGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAggg                                                                                                                                                                                                                                                                                        <  2:749852/300‑1 (MQ=255)
       tAATTCCCAGGTGTGTGGGTATTTCCGTTTGGTGTTGTCTGAAGTCGAATACCAGACGGTATCGCCAGGCGTTGCACAACCGGTCATCGCACCCGTATTCGGGCAGTGTAGCGTTAATTCGCGACCATCGGGTGTGATCACATCGGCTAAAAAACGTTTGTAACGCTGAATTAGCGTCGCGCGCTGTAGAGGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAAc                                                                                                                                                                                                                                                                                   <  1:837435/300‑1 (MQ=255)
        aaTTCCCAGGTGTGTGGGTATTTCCGTTTGGTGTTGTCTGAAGTCGAATACCAGACGGTATCGCCAGGCGTTGCACAACCGGTCATCGCACCCGTATTCGGGCAGTGTAGCGTTAATTCGCGACCATCGGGTGTGATCACATCGGCTAAAAAACGTTTGTAACGCTGAATTAGCGTCGCGCGCTGTAGAGGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACt                                                                                                                                                                                                                                                                                  <  1:347349/300‑1 (MQ=255)
         aTTCCCAGGTGTGTGGGTATTTCCGTTTGGTGTTGTCTGAAGTCGAATACCAGACGGTATCGCCAGGCGTTGCACAACCGGTCATCGCACCCGTATTCGGGCAGTGTAGCGTTAATTCGCGACCATCGGGTGTGATCACATCGGCTAAAAAACGTTTGTAACGCTGAATTAGCGTCGCGCGCTGTAGAGGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTGGCGTGTTTGTCCCCAGAAAAACAAGGAGGCGGCAAGGGTGAACTc                                                                                                                                                                                                                                                                                 >  1:445299/1‑300 (MQ=255)
         aTTCCCAGGTGTGTGGGTATTTCCGTTTGGTGTTGTCTGAAGTCGAATACCAGACGGTATCGCCAGGCGTTGCACAACCGGTCATCGCACCCGTATTCGGGCAGTGTAGCGTTAATTCGCGACCATCGGGTGTGATCACATCGGCTAAAAAACGTTTGTAACGCTGAATTAGCGTCGCGCGCTGTAGAGGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTc                                                                                                                                                                                                                                                                                 <  1:404571/300‑1 (MQ=255)
             ccAGGTGTGTGGGTATTTCCGTTTGGTGTTGTCTGAAGTCGAATACCAGACGGTATCGCCAGGCGTTGCACAACCGGTCATCGCACCCGTATTCGGGCAGTGTAGCGTTAATTCGCGACCATCGGGTGTGATCACATCGGCTAAAAAACGTTTGTAACGCTGAATTAGCGTCGCGCGCTGTAGAGGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTc                                                                                                                                                                                                                                                                             <  1:347516/300‑1 (MQ=255)
                       gggTATTTCCGTTTGGTGTTGTCTGAAGTCGAATACCAGACGGTATCGCCAGGCGTTGCACAACCGGTCATCGCACCCGTATTCGGGCAGTGTAGCGTTAATTCGCGACCATCGGGTGTGATCACATCGGCTAAAAAACGTTTGTAACGCTGAATTAGCGTCGCGCGCTGTAGAGGGGTAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACg                                                                                                                                                                                                                                                                  <  1:180415/300‑1 (MQ=255)
                         gTATTTCCGTTTGGTGTTGTCTGAAGTCGAATACCAGACGGTATCGCCAGGCGTTGCACAACCGGTCATCGCACCCGTATTCGGGCAGTGTAGCGTTAATTCGCGACCATCGGGTGTGATCACATCGGCTAAAAAACGTTTGTAACGCTGAATTAGCGTCGCGCGCTGTAGAGGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGAc                                                                                                                                                                                                                                                               <  1:515446/300‑1 (MQ=255)
                          tgtttCCGTTTGGTGTTGTCTGAAGTCGAATACCAGACGGTATCGCCAGGCGTTGCACAACCGGTCATCGCACCCGTATTCGGGCAGTGTAGCGTTAATTCGCGACCATCGGGTGTGATCACATCGGCTAAAAAACGTTTGTAACGCTGAATTAGCGTCGCGCACTGTAGAGGGGGAGAAAACTCCATTGCGACAACCCTTGTTATTGCGTCAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGAcc                                                                                                                                                                                                                                                              <  2:366969/298‑1 (MQ=255)
                                    tGGTGTTGTCTGAAGTCGAATACCAGACGGTATCGCCAGGCGTTGCACAACCGGTCATCGCACCCGTATTCGGGCAGTGTAGCGTTAATTCGCTACCATCGGGTGTGATCACATCGGCTAAAAAACGTTTGTAACGCTGAATTAGCGTCGCGCGCTGTAGAGGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAAcc                                                                                                                                                                                                                                                   <  2:247449/300‑1 (MQ=255)
                                    tGGTGTTGTCCGAATTCAAATACCAGACGGTATCGCCAGGCGTTGCACAACCGTTCATCGCACCCGTATTCGGGCAGTGTAGCGTTAATTCGCGACCATCGGGTGTGATCACATCGGCTAAAAAACGTTTGTAACGCTGAATTAGCGTCGCGCGCTGTAGAGGGGTAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAAcc                                                                                                                                                                                                                                                   <  2:247438/300‑1 (MQ=255)
                                           gtCTGAAGTCGAATACCAGACGGTATCGCCAGGCGTTGCACAACCGGTCATCGCACCCGTATTCGGGCAGTGTAGCGTTAATTCGCGACCATCGGGTGTGATCACATCGGCTAAAAAACGTTTGTAACGCTGAATTAGCGTCGCGCGCTGTAGAGGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTCGCGGCGTGTAGCGTTTGTTTCCCCAGAAAAAAAAAGAGGCATAAAAGGTGGACTCCGTCCCCACATACGACCAATTCAAACCCggcggc                                                                                                                                                                                                                                            >  1:708701/1‑300 (MQ=255)
                                                          ccAGACGGTATCGCCAGGCGTTGCACAACCGGTCATCGCACCCGTATTCGGGCAGTGTAGCGTTAATTCGCGACCATCGGGTGTGATCACATCGGCTAAAAAACGTTTGTAACGCTGAATTAGCGTCGCGCGCTGTAGAGGGGGAGAANATTCCATTGCGACAATCCTTGTTATTNCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGcc                                                                                                                                                                                                                             <  2:562450/300‑1 (MQ=255)
                                                                    tCGCCAGGCGTTGCACAACCGGTCATCGCACCCGTATTCGGGCAGTGTAGCGTTAAGTCGCGACCATCGGGTGTGATCACATCGGCTAAAAAACGTTTGTAACGCTGAATTAGCGTCGCGCGCTGTAGAGGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGt                                                                                                                                                                                                                   <  1:304548/300‑1 (MQ=255)
                                                                              ttGCACAACCGGTCATCGCACCCGTATTCGGGCAGTGTAGCGTTAATTCGCGACCATCGGGTGTGATCACATCGGCTAAAAAACGTTTGTAACGCTGAATTAGCGTCGCGCGCTGTAGAGGGGGAGAAAATTCCATTGCGACAATCCTNGTTATTGCGTTAGCGCCCAGCGTTTTNGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATaa                                                                                                                                                                                                         <  2:559712/300‑1 (MQ=255)
                                                                                 cacaACCGGTCATCGCACCCGTATTCGGGCAGTGTAGCGTTAATTCGCGACCATCGGGTGTGATCACATCGGCTAAAAAACGTTTGTAACGCTGAATTAGCGTCGCGCGCTGTAGAGGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGt                                                                                                                                                                                                      <  1:519727/300‑1 (MQ=255)
                                                                                                                              cgcgACCATCGGGTGTGATCACATCGGCTAAAAAACGTTTGTAACGCTGAATTAGCGTCGCGCGCTTTAGAGGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCg                                                                                                                                                        <  2:90969/300‑1 (MQ=255)
                                                                                                                                 gACCATCGGGTGTGATCACATCGGCTAAAAAACGTTTGTAACGCTGAATTAGCGTCGCGCGCTGTAGAGGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGc                                                                                                                                                     <  1:834390/300‑1 (MQ=255)
                                                                                                                                         ggTGTGATCACATCGGCTAAAAAACGTTTGTAACGCTGAATTAGCGTCGCGCGCTGTAGAGGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCCCAGACAAAAAAGGAGGAGTAAAAGGTGAACTCCGTCACCACACACGAACAATTCAAACCTTGCGGGGGGATTGTCAACACCTCGATGGAGTCACGCAACAAGGTAATCTGTGGACGAAACAGACGACTGCTTTTAAAACAACCACCGCAGGCAGCCcgtg                                                                                                                                             >  1:21217/1‑300 (MQ=255)
                                                                                                                                         ggTGTGATCACATCGGCTAAAAAACGTTTGTAACGCTGAATTAGCGTCGCGCGCTGTAGAGGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGGAGAGTGTGTGTCCCCAGACAAACGAGGAGGAGTAAAGGGTGAACTCCGTCAACGCACACGAACAATTACAAACTTGCGGAGGGGGTGTCACCACCCCGCTGGCGTCGCGCAAGAAGGGAATATGTGGATGAAACAGACAAGTTCTTTTAAAAAAAACACTTCGGGCAACCtgtg                                                                                                                                             >  1:368847/1‑300 (MQ=255)
                                                                                                                                            gtgATCACATCGGCTAAAAAACGTTTTTAACGCTGAATTAGCGTCGCGCGCTGTAGAGGTGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAAc                                                                                                                                          <  1:65182/300‑1 (MQ=255)
                                                                                                                                            gtgATCACATCGGCTAAAAAACGTTTGTAACGCTGAATTAGCGTCGCGCGCTGTAGAGGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAAc                                                                                                                                          <  1:793722/300‑1 (MQ=255)
                                                                                                                                            gtgATCACATCGGCTAAAAAACGTTTGTAACGCTGAATTAGCGTCGCGCGCTGTAGAGGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAAc                                                                                                                                          <  2:380293/300‑1 (MQ=255)
                                                                                                                                            gtgATCACATCGGCTAAAAAACGTTTGTAACGCTGAATTAGCGTCGCGCGCTGTAGAGGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGNTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAAc                                                                                                                                          <  1:582267/300‑1 (MQ=255)
                                                                                                                                            gtgATCACATCGGCTAAAAAACGTTCGTAACGCTGAATTAGCGTCGCGCGCTGTAGAGGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAAc                                                                                                                                          <  1:361015/300‑1 (MQ=255)
                                                                                                                                                      cGGCTAAAAAACGTTTGTAACGCTGAATTAGCGTCGCGCGCTGTAGAGGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAACGGAGCATAtt                                                                                                                                <  2:769046/300‑1 (MQ=255)
                                                                                                                                                      cGGCTAAAAAACGTTTGTAACGCTGAATTAGCGTCGCGCGCTGTAGAGGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAACGGAGCATAtt                                                                                                                                <  1:111611/300‑1 (MQ=255)
                                                                                                                                                      cGGCTAAAAAACGGTGGTAACGCTGAATTAGCGTCGCGCGCTGTAGAGGGTTAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACAGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAACGGAGCATAtt                                                                                                                                <  2:134596/300‑1 (MQ=255)
                                                                                                                                                       ggCTAAAAAACGTTTGTAACGCTGAATTAGCGTCGCGCGCTGTAGAGGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAACGGAGCATATTc                                                                                                                               <  1:383846/300‑1 (MQ=255)
                                                                                                                                                                       tAACGCTGAATTAGCGTCGCGCGCTGTAGAGGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAACGGAGCATATTCGCCAGCTGGATTAAGc                                                                                                               <  1:48649/300‑1 (MQ=255)
                                                                                                                                                                          cGCTGAATTAGCGTCGCGCGCTGTAGAGGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGTGTGTGTGTCCACAGACAAACGAGGAGGCGTAAAAGGTGAACCCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCAACGCCTCGCTGGCGTCGCGCAACAAGGTAACATGTGGATGAAAAGGACAATTGCTTTGAAAAAAACCACCGCGGGCAGCCTGTTAACGGAGCATACTCTCCAACTGGACTAAGccac                                                                                                            >  2:485372/1‑298 (MQ=255)
                                                                                                                                                                              gAATTAGCGTCGCGCGCTGTAGAGGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTTTGTCCCCAGACAAACAAAGAGGCGTAAAAGGTGGACCCCATCACCACACACAAACAATTCCAACCCGGAGGCGGGATTGTCCCCACCCCGCTTGCGTCGCGCAATCAAGTAACCTGTGGACGGAACGGACGACTGCTTTTAAAACAACCACCTCGAGTAACCTTTGAACGGAGAACATTCCCCAGCCTGATTCAGCCGCGTgg                                                                                                        >  1:428788/1‑300 (MQ=255)
                                                                                                                                                                              gAATTAGCGTCGCGCGCTGTAGAGGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCCCAGACAAACAAGGAGGCGTAAAAGGTGAACCCCGTCCCCACATACGAACAATTCAAACCCGGCGGAGGGATTGTCCCCACCTCGCTGGCGTCGCGCAACAAGGGAATATGTGGATGAAACAGACGATTGCTTTTAAAAAAAACACCTCGGGAAGCCTGTGGACGGAGCACATTCTCCAACTgggttcaaccacgtgg                                                                                                        >  1:551757/1‑286 (MQ=255)
                                                                                                                                                                                         gcgcgcTGTAGAGGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAANGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCNCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAACGGAGCATATTCGCCAGCTGGATTAAGCCGCGTGGCGGCTGACGCa                                                                                             <  2:675641/300‑1 (MQ=255)
                                                                                                                                                                                              cTGTAGAGGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCATGTGCGTCCCCAGACAAACAAAGAGGCGTCAAAGGTGAACCCCACCCCCACCCCCGAACCATCAAAACCCTGCGGCGGGGTTGTCCCCCCCCCACTGGCGTTGTGAAATAAGGTAATACCTGGATGAAAAAGACGACTGCTTTTAAAACAACCGCTGCTGGGCGCCTGTGAACAGAGCATATTTGCCAGCTGGGTTACGTCCCGTGGGGGTTGACGCATcccc                                                                                        >  2:91667/1‑299 (MQ=255)
                                                                                                                                                                                              cTGTAGAGGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGGAGCGTGTGTGTCCCCGGACAAACAAGGAGGCGTAAAGGGTGGACTCCGTCCACCCATCCTACCCATTCAAAACCGGCGGCGGGATTGTCAACACCCCACTTGTGTCACGCCATCAGGTGATATTTTGATGGAACAGACGATTGCTTTTAAAACAACCACTTAGGGAAGACTGTGAAAGGAGCACACTCTCCAACTGGATTAAACCGAGTGGAGGCTGAcaaaccccc                                                                                        >  1:687710/1‑292 (MQ=255)
                                                                                                                                                                                                  agagGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAACGGAGCATATTCGCCAGCTGGATTAAGCCGCGTGGCGGCTGACGCATCCCTAacc                                                                                    <  2:715727/300‑1 (MQ=255)
                                                                                                                                                                                                  agagGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAACGGAGCATATTCGCCAGCTGGATTAAGCCGCGTGGCGGCTGACGCATCCCTAacc                                                                                    <  1:54622/300‑1 (MQ=255)
                                                                                                                                                                                                    atggggAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAACGGAGCATATTCGCCAGCTGGATTAAGCCGCGTGGCGGCTGACGCATCCCTAaccac                                                                                  <  1:677374/298‑1 (MQ=255)
                                                                                                                                                                                                    agGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAACGGAGCATATTCGCCAGCTGGATTAAGCCGCGTGGCGGCTGACGCATCCCTAaccac                                                                                  <  1:16126/300‑1 (MQ=255)
                                                                                                                                                                                                      gtgtagaAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAACGGAGCATATTCGCCAGCTGGATTAAGCCGCGTGGCGGCTGACGCATCCCTAaccacac                                                                                <  1:274093/296‑1 (MQ=255)
                                                                                                                                                                                                      gggtagaAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAACGGAGCATATTCGCCAGCTGGATTAAGCCGCGTGGCGGCTGACGCATCCCTAaccacac                                                                                <  1:850321/296‑1 (MQ=255)
                                                                                                                                                                                                              aaTTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAACGGAGCATATTCGCCAGCTGGATTAAGCCGCGTGGCGGCTGACGCATCCCTAACCACACCACAcgcg                                                                        <  1:158441/300‑1 (MQ=255)
                                                                                                                                                                                                                 tCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGTAGGCGTAAAGGGTGAACTCCGTCACCGCATACGGCCAGTGAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAACGGAGCATATTCGCCAGCTGGATTAAGCCGCGTGGCGGCTGACGCATCCCTAACCACACCACACGCGAAc                                                                     <  2:108771/300‑1 (MQ=255)
                                                                                                                                                                                                                             aTCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAACGGAGCATATTCGCCAGCTGGATTAAGCCGCGTGGCGGCTGACGCATCCCTAACCACACCACACGCGAACGCAGCCATTGTc                                                         <  2:499405/300‑1 (MQ=255)
                                                                                                                                                                                                                                            ttAGCGCCCAGCGTTTTAGCGGTGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGAATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGTTAATATGTGGATGAAACGGACGATTGCTTTGGAAACAACCGCTGCGGGCAGCCTGTGAACGGAGTATATTCGCCAGCGGAATTAAGCCGCGTGGTGGCTGACGCATCCCTAACCACACCACACGCGAACGCAGCCATTGTCCGGCGTCATCAAGCg                                          <  2:321637/300‑1 (MQ=255)
                                                                                                                                                                                                                                            ttAGCGCCCAGCGTGTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTAGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAACGGAGCATATTCGCCAGCTGGATTAAGCCGCGTGGCGGCTGACGCATCCCTAACCACACCACACGCGAACGCAGCCATTGTCCGGCGTCATCAAGCg                                          <  1:336044/300‑1 (MQ=255)
                                                                                                                                                                                                                                                cgcccggctttgtAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAACGGAGCATATTCGCCAGCTGGATTAAGCCGCGTGGCGGCTGACGCATCCCTAACCACACCACACGCGAACGTAGCCATTGTCCGGCGTCATCAAGCGTGAg                                      <  2:407862/288‑1 (MQ=255)
                                                                                                                                                                                                                                                cgcCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAACGGAGCATATTCGCCAGCTGGATTAAGCCGCGTGGCGGCTGACGCATCCCTAACCACACCACACGCGAACGCAGCCATTGTCCGGCGTCATCAAGCGTGAg                                      <  2:405948/300‑1 (MQ=255)
                                                                                                                                                                                                                                                  cccAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAACGGAGCATATTCGCCAGCTGGATTAAGCCGCGTGGCGGCTGACGCATCCCTAACCACACCACACGCGAACGCAGCCATTGTCCGGCGTCATCAAGCGTGAgtg                                    <  2:545412/300‑1 (MQ=255)
                                                                                                                                                                                                                                                        gTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGACAGACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAACGGAGCATATTCGCCAGCTGGATTAAGCCGCGTGGCGGCTGACGCATCCCTAACCACACCACACGCGAACGCAGCCATTGTCCGGCGTCATCAAGCGTGAGTGTGAAAc                              <  2:765239/300‑1 (MQ=255)
                                                                                                                                                                                                                                                            tAGCGGNGTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAANTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAACGGAGCATATTCGCCAGCTGGATTAAGCCGCGTGGCGGCTGACGCATCCCTAACCACACCACACGCGAACGCAGCCATTGTCCGGCGTCATCAAGCGTGAGTGTGAAACCAgg                          <  2:703761/300‑1 (MQ=255)
                                                                                                                                                                                                                                                                ggcgTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAACGGAGCATATTCGCCAGCTGGATTAAGCAGCGTGGCGGCTGACGCATCCCTAACCACACCACACGCGAACGCAGCCATTGTCCGGCGTCATCAAACGTGAGTGTGAAACCAGGTTGa                      >  1:113242/1‑300 (MQ=255)
                                                                                                                                                                                                                                                                 gcgTGTAGCGTGTGCGTCTACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCAACGCCTCGCTGGTGTCGCGCAATAAGGTAATCTGTGGCTGAAACGGACGGTTGCTTTGGAAACACCTGCTGCGGGCAGTCTGTGAACGGAGCATATTCGCCGGTTGGATTAAGCAGCGTGGCGGCTGACGCATCCCTAACCACATCACACGCGAACGCAGCCATTGTCTGGCGTCCTCCAGCGTGAGTGTGAAGCCAGGTTGAc                     >  2:28524/1‑300 (MQ=255)
                                                                                                                                                                                                                                                                  cgTGTAGCGTGTGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAACACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAACGGAGCATATTCGCCAGCTGGATTAAGCCGCGTGGCGGCTGCCGCATCCCTAACCACACCACACGCGAACGCCGCCATTGTCCGGCGTCATCAAGCGTGAGTGTGAAACCAGGTTGACg                    >  2:27084/1‑300 (MQ=255)
                                                                                                                                                                                                                                                                          gtgtGCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGNTGAAACGGACGATTGCTTTGAAAACAGCCGCTGCGGGCAGCCTGTGAACGGAGCCTATTCGNCAGCTGGATTAAGCCGCGTGGCGGCTGACGCATCCCTAACCACACCAAACGCGAACGCAGCCATCGTCCGGCGTCATCAAGCGTGAGTGTGAAACAAGGTTGACGAAtccgtc            >  2:685272/1‑300 (MQ=255)
                                                                                                                                                                                                                                                                           tgtgCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGAGGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAACGGAGCATATTCGCCAGCTGGATTAAGCCGCGTGGCGGCTGACGCATCCCTAACCACACCACACGCGAACGCAGCCATTGTCCGGCGTCATCAAGCGTGAGGGTGAAACCAGGTTGACGAAtccgtcc           <  1:833739/300‑1 (MQ=255)
                                                                                                                                                                                                                                                                            gtgCGTCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTCAAAACCTGGCGGCGGGATTGTCAACGCCTAGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAACGGAGCATATTCGCCAGCTGGATTAAGCCGCGTGGCGGCTGACGCATCCCTAACCACAACACACGCGAACGCAGCCATTGTCCGGCGTCATCAAGCGCGAGTGTGAAACCAGGTTGACGAAtccgtccg          >  2:33517/1‑300 (MQ=255)
                                                                                                                                                                                                                                                                                 tCCACGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGAGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAACGGAGCATATTCGCCAGCTGGATTAAGCCGCGTGGCGGCTGACGCATCCCTAACCACACCACACGCGAACGCAGCCATTGTCCGGCGTCATCAAGCGTGAGTGTGAAACCAGGTTGACGAATCCGTCCGGCTaa     >  1:312151/1‑300 (MQ=255)
                                                                                                                                                                                                                                                                                    aCGGACAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAACGGAGCATATTCGCCAGCTGGATTAAGCCGCGTGGCGGCTGACGCATCCCTAACCACACCACACGCGAACGCAGCCATTGTCCGGCGTCATCAAGCGTGAGTGTGAAACCAGGTTGACGAATCCGTCCGGCTAAAag  <  1:399167/300‑1 (MQ=255)
                                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                                                           
TTTGAGTTAATTCCCAGGTGTGTGGGTATTTCCGTTTGGTGTTGTCTGAAGTCGAATACCAGACGGTATCGCCAGGCGTTGCACAACCGGTCATCGCACCCGTATTCGGGCAGTGTAGCGTTAATTCGCGACCATCGGGTGTGATCACATCGGCTAAAAAACGTTTGTAACGCTGAATTAGCGTCGCGCGCTGTAGAGGGGGAGAAAATTCCATTGCGACAATCCTTGTTATTGCGTTAGCGCCCAGCGTTTTAGCGGCGTGTAGCGTGTGCGTCCACGGGCAAACGAGGAGGCGTAAAGGGTGAACTCCGTCACCGCATACGACCAGTTAAAACCTGGCGGCGGGATTGTCACCGCCTCGCTGGCGTCGCGCAATAAGGTAATATGTGGATGAAACGGACGATTGCTTTGAAAACAACCGCTGCGGGCAGCCTGTGAACGGAGCATATTCGCCAGCTGGATTAAGCCGCGTGGCGGCTGACGCATCCCTAACCACACCACACGCGAACGCAGCCATTGTCCGGCGTCATCAAGCGTGAGTGTGAAACCAGGTTGACGAATCCGTCCGGCTAAAAG  >  NC_000913/161273‑161848

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: