| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,097,158 | 0 | C | T | 36.4% | 23.9 / 35.3 | 45 | intergenic (+329/+407) | ycdU/serX | uncharacterized protein YcdU/tRNA‑Ser |
| Reads supporting (aligned to +/- strand): ref base C (7/21); new base T (12/4); total (19/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.84e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.24e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTG‑TGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTC‑GGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGG > NC_000913/1096859‑1097449 | atatatGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTG‑TGCAATac < 1:78720/300‑1 (MQ=255) tCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAAATGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCACGGTGTG‑TGCAATATACGaaaaa > 1:75092/1‑300 (MQ=255) gTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTG‑TGCAATACACGaaaaaaaa > 1:104293/1‑300 (MQ=255) ctctTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTATGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGCCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTG‑TGCAATATACGAAAAAAAAGCCCg > 2:315797/1‑300 (MQ=255) ttAACTAGACAGTTGATGTGCACGATTTCCCCTCTCCCTAACAGACGTGGGCGGTGGCACCCGTTGTGTGCAAGATACGAAGAAAAAGCCCGTACTTTTGTACGAGTTCTTCTTTAAATATGGCGGTTAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCTCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGTTCGGGGCTTCTCATCCCCCCGGTGTG‑TGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAat < 2:114546/299‑1 (MQ=17) gTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTG‑TGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAat < 1:317757/300‑1 (MQ=255) gATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTG‑TGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGTGGATTGAc < 1:250826/300‑1 (MQ=255) cccTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTG‑TGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGAttcgaacccccaatccg > 2:308519/1‑285 (MQ=255) cccTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCAGGTCGGGGCGCCTCATCCCCCCGGTGTG‑TGTAATATACGAAAAAAAAGCCCGTACTTTCGTATGGGTTCTTCTTTAAATATGGAGGTGAGGGGGGGATTGACTCGCTtagctcg > 1:468591/1‑300 (MQ=14) cccTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTCCGTTCGCCCTACGGGCCGCACGCTCAATGCGTTCCCGGTCTGCCCAACTGGCTGTAGACAGTTGTCGAACCCCGGTCGGGGCCCCTCATCCCCCCGTTGTG‑TGCAATATACGCCCAAACAGCCCGTACCTTCTTACGAGCTCTTCTTTAAATATGGAGGTGAGGGGGGGAtttacccgcctagctcg > 2:516293/1‑285 (MQ=11) cccTAAAAGACGGGGGCGTGGTCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTGAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTG‑TGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGAttcgaacccccgatacg < 1:310343/300‑16 (MQ=11) tAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTG‑TGCAATACACGACAAAAAAGCCCGTACTTTCGTACGAGTTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGccc > 1:407470/1‑300 (MQ=255) tAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCCCATCCCAACGGTGTG‑TGCAATATACGAAAAAAAAGGCAGTACTTTTGTACGGGTTATTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTAGCTCGccc > 1:364879/1‑300 (MQ=11) gACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTATGGGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTG‑TGCAATATACGAAAAAAAAGCACGTACTTTCGTATGAGCTCTTATTTAAATATGGCGGTGAGGGGGGGTTTGACTCGCTTCGCTCGCCCTGCgg > 1:739610/1‑300 (MQ=11) gACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTG‑TGCCATACACGAAGAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGAATCGCTTCGCTCGCCCTGCgg > 1:186601/1‑300 (MQ=255) cGTGGGCGGGGGCACCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCGGTAAGTGTGGTGGGGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCGCTGCGTTCACGTTCTGTCCAGCTTGCTTTCGCCAGTTGTCGACCCCCGTTCGTGGCTTCTCATCCCCCCGGTGTG‑TGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGc < 1:865413/300‑1 (MQ=11) cGTGGGCGGGGGCACCCGGTGGGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTG‑TGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGc < 1:536338/300‑1 (MQ=255) ggCGGGTGCGCCCGTTGTGTGCAGTATACGAAAAAAAAGTCCGTACGTTCGTACGAGCTCTTCGTTAAAGGTGGTGGTGAGGGGGGGATTGACGCGCTTCGCTCGCCCTGCGGGCAGCCGGTTCATTGCGTTCACGTTCTGTCTAACGGGCTTTCGCCAGTTGTCGACCCCCGTTCGGGGCTTCTCATCCCCCCGGTGTG‑TGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGcc < 2:14469/300‑1 (MQ=11) ggggCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCAGGTCGGGGCTTCTCATCCCCCCNGTGTG‑TGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCt > 1:638413/1‑300 (MQ=11) cACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTAATCCCCCCGGTGTG‑TGCAATCTACGAAAAAAAAGCCCGTGCTTTCGTCCGAGTTTTTCTTTCCATCTGGCGGTGGGGGGGGGATTTAATCTCTTCTCTCGcccctctggccaccctctccct > 1:476754/1‑281 (MQ=11) gCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTGTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCTGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAATTGGCTTTCGCCAGTTGTCTGCCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTG‑TGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTc < 1:32217/300‑1 (MQ=255) ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTG‑TGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTcc < 1:114130/300‑1 (MQ=33) cGAAAAAAAAGCCTGTACGTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGTGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTG‑TGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAAc < 1:459426/300‑1 (MQ=17) gacagaaggcctgtgccttCGTATGAGCTCTTCGTTGAATATGATGGTTAGGGGGGGATCGACTCGCTTCGCTCGCCCTGCGGGCAGCCGACTCACGGCGTGCGCGGTCTGTACAACGTGCTGGCGACAGTTGTCGACCCCCGTTCGGGGCTTCTCATCCCCCCGGTGTG‑TGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTg < 2:6546/283‑1 (MQ=11) aaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATAGGGCGGGGAGGGGGGGATTGACTCGCTTCGCGCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCTAACTGGCTGTCGCCAGTTGTCGACCCCCGTTCGGGGCTTCTCATCCCCCCGGTGTG‑TGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCt < 1:311107/300‑1 (MQ=12) cTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTAGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTG‑TGCCATACCCGCACAAAACGCCCGTACCTTCGTCCGAGCTCTTCTTTCAATCTGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCATGGTCTGTCCCAATGGCTGTTGCAAGTTGt > 1:209704/1‑300 (MQ=11) tGAGGGGGGGATTGACTCGCTTCGCGCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGTTCGGGGCTTCTCATCCCCCCGGTGTG‑TGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTC‑GGGGCTTCTCATCCCCCCgg < 1:288353/300‑1 (MQ=17) aGGGGGGGATTGACTCGCTTCGCTCGCCCTGCTGGCATCCCGCTCACTGCGTTCACGGTCTGTCCGACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTG‑TGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTC‑GGGGCTTCTCATCCCCCCGgtg < 1:278006/300‑1 (MQ=17) aGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGTTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTG‑TGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTC‑GGGGCTTCTCATCCCCCCGgtg < 1:532129/300‑1 (MQ=17) ggATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTG‑TGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTC‑GGGGCTTCTCATCCCCCCGGTGTGTGCa < 1:294686/300‑1 (MQ=32) atcgACTCGATCCGCTCGCCCTGCGTGCATTCCGCTTGCTGCGGTCAGTGTCTGTCCGGCTGGCTGGCGCCATTTTTCGACCCCCATTCGTTGCTTCTCATCCCCCCGGTGTG‑TGCAATACACGAAAAAAAANCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTC‑GGGGCTTCTCATCCCCCCGGTGTGTGCAat < 2:221374/297‑1 (MQ=11) tGACTCGCTTCGCTCGCCCTGCGGGCAGCCCACTCACTACGTCCACGTTCTGTCTACCGTGTTTCCGCCGGTCGTCTACCCCCGTTCGTGGCTTCTCGTCCCCCCGGTGTG‑TGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTC‑GGGGCTTCTCATCCCCCCGGTGTGTGCAatat < 1:592998/300‑1 (MQ=11) gTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTG‑TGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTC‑GGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTAGTATGAGCTCTTCTTTa > 1:875032/1‑300 (MQ=17) gctttcgtcAGTTTTCGACCCCCATTCGGGGCTTCTCATCCCCCCGGTGTG‑TGCAATACACGGAAAAAAAGCCCGTACTTTCGTACAAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTC‑TGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAggggggg < 1:219581/292‑1 (MQ=11) tatcaccAGTTGTCTACCCCCGTTCTTGGCTGCCCAGCCCCCCGG‑GTGGTGCAGTACACGGAGAAAAAGCTTGGACGTTCGGACGAGCTCTGCGTTAAAGATAGCGGGTAGGGTGGGATTGACTCGCTCCGCTCTCCCTGCTGGCATCCCGCTCGCTGCTTTCACGTCCTGTCTAACTGGCTTGCGCCATTTTTCGA‑CCCCCATCTGTGGCTTCTCGTCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGAt < 1:108851/295‑1 (MQ=2) ccAGTTGTCGACCCCCGTTCGGGGCTTCTCATCCCCCCTGTGTG‑TGCAATACACGAAAAAAAAGCCCGGACTTTCGTACGAGCTAGTCTGTAAAGATTTTGGTGAGGGGGGGATTGACTCGCGTCGCTCGCCCTGCGGGCAGCCTGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTC‑GGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACt < 2:856563/300‑1 (MQ=11) ttcctaacctcgtccgcggttgctcATCCCCCCGGTGTG‑TGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGTTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTC‑GGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcgctt < 1:554197/278‑1 (MQ=11) tgtataCCCCCGTTCGTGGCTGCTCATCCCCCCGGTGTG‑TGCAATACACGAAAAAAAAGCCCGTACTTGCGTACGAGCTCTTCGTTAAATATGGCGGTGAGGGGGGGATGGACTCGCTTCGCTCGCCCGGCGGGCAGCCCGCTCACGGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTC‑GGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcgctt < 1:329051/295‑1 (MQ=11) taaccgacgtgggtgtgggcgcccGGTGTG‑GGCAATAGAAGAAAAAAAAGCCCGTACTTGCGTACGAGCTCTTCTTTAAATCTTGCGGTGAGTGTGGGATTGACTCGCTTCGCGCGCCCTGCGGGCAGCCCACTCACTGCGGTCACGGTCTGTCTAGCTGGCTGTCGCCAGTTTTCGAACCCCGGTC‑GGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGccc < 2:74883/279‑1 (MQ=11) gggCTTCTCATCCCCACGGTGTG‑TGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGAAGGCAACACGTTCACTGCGTTCACGGTCTGTCCACCTGGTTGTCGACCGTCGTCGAGCCCCGGTC‑GGGGCTTCTCGTCAACCAGGTGGGTGCAATACACGAAAAAAACGAACGTACTTTCGTAAGAGTTAGTATGTACATCTGGAGGTGAGGGGGGGATTGAATCGCTtcgatcgcaccggggtc > 2:442847/1‑291 (MQ=2) tctcATCCCCCCGGTGTG‑TGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTC‑GGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCCCGCCCTGCGGGCAGccc > 1:543565/1‑300 (MQ=21) aTCCCCCCGGTGTG‑TGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTC‑GGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTc < 1:691684/300‑1 (MQ=35) cccccGGTGTG‑TGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCCGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTC‑GGGGCTTCTCATCCCCCAGGTGTGTGCAATATACGAAAAAAACGCCCGTACTTTCGTACGAGCTCTTATTTAAATATGGCGGTGAGGGGGGGATTGACTCTCCTAACTCGCCCTGcttgccgtccgctcaca > 2:268779/1‑284 (MQ=11) cccccGGTGTG‑TGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCCGTCGCCAGTTGTCGAACCCCGGTC‑GGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCatt > 1:586422/1‑298 (MQ=17) gtg‑tgCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTC‑GGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCAc > 1:501579/1‑300 (MQ=14) g‑tgCAATATACGAAAAAAAAGCCCGTACTTTCGGACGAGCTCTTCTTTAAAGATGGCGGGGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTC‑GGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACgg < 1:690353/300‑1 (MQ=9) | ATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTG‑TGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTC‑GGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGG > NC_000913/1096859‑1097449 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |